Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8166188.1

Orthogroup ID

OG0006176

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 605

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8166188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgcctgcaattgagccctcgcagctcaaaaaacgccctccatccgatgagaagatcacttggcagtggcttccttttacgaattctgctcggaaagatgacttgcagctttaccattgggttagagttgtcaatggtgccccacctactggtgactactcctttgccaagtataacaagtctgtcgatattatcaaatacactgacgaggagtatgataagtatttgactgatcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DMAP1 SANT_DAMP1_like

Protein Analysis

79

Amino Acids

9.31

Weight (kDa)

5.7

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47210 AT2G47210 AT2G47210
fragaria_vesca	FvH4_1g26770 FvH4_1g26770 FvH4_1g26770 FvH4_1g26770 FvH4_1g26770
malus_domestica	MD01G1004200.v1.1 MD15G1342700.v1.1
prunus_persica	Prupe.3G006800_v2.0.a1 Prupe.3G006800_v2.0.a1
pyrus_communis	pycom01g02120 pycom01g02130 pycom15g30390 pycom15g30400
rosa_chinensis	RchiOBHm_Chr3g0486991
rosa_laevigata	RLG00000023041
rosa_multiflora	Rmu_co8166188.1_g000001 Rmu_sc0009825.1_g000003
rosa_roxburghii	Rroxscaffold_6G00395270
rosa_rugosa	Rorug03G0229000
rosa_samantha	Rh3AG278400 Rh3BG314300 Rh3CG312700 Rh3DG309100
rosa_wichuraiana	Rw0G001670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	149
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	149
AluBI	AGCT	2 cut(s)	25, 109
AluI	AGCT	2 cut(s)	25, 109
AlwI	GGATC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	22, 106
ApoI	RAATTY	1 cut(s)	82
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AsuHPI	GGTGA	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	34, 118
BccI	CCATC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	23, 107
BlsI	GCNGC	2 cut(s)	24, 108
BmiI	GGNNCC	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	34, 118
BshNI	GGYRCC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	18, 142
Bsp143I	GATC	2 cut(s)	54, 232
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	54, 232
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	57, 235
BstMBI	GATC	2 cut(s)	54, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	34, 118
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	71, 201
Cac8I	GCNNGC	1 cut(s)	6
CviJI	RGCY	4 cut(s)	16, 25, 70, 109
CviKI_1	RGCY	4 cut(s)	16, 25, 70, 109
DpnI	GATC	2 cut(s)	56, 234
DpnII	GATC	2 cut(s)	54, 232
Eco24I	GRGCYC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	18
FaiI	YATR	2 cut(s)	174, 216
Fnu4HI	GCNGC	2 cut(s)	23, 107
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	23, 107
GluI	GCNGC	2 cut(s)	23, 107
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	46, 93
HpyCH4V	TGCA	2 cut(s)	8, 106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	54, 232
LpnPI	CCDG	2 cut(s)	18, 135
Lsp1109I	GCAGC	2 cut(s)	34, 118
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	2 cut(s)	56, 234
MboI	GATC	2 cut(s)	54, 232
MboII	GAAGA	1 cut(s)	64
MfeI	CAATTG	1 cut(s)	9
MhlI	GDGCHC	2 cut(s)	18, 142
MluCI	AATT	2 cut(s)	9, 82
MnlI	CCTC	3 cut(s)	28, 48, 202
MunI	CAATTG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	2 cut(s)	54, 232
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	24, 108
PspN4I	GGNNCC	1 cut(s)	139
SatI	GCNGC	2 cut(s)	23, 107
Sau3AI	GATC	2 cut(s)	54, 232
SduI	GDGCHC	2 cut(s)	18, 142
SetI	ASST	3 cut(s)	27, 111, 148
SgeI	CNNG	9 cut(s)	17, 31, 72, 102, 115, 162, 181, 190, 220
Sse9I	AATT	2 cut(s)	9, 82
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	9, 82
TscAI	CASTG	2 cut(s)	71, 208
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	22, 106
Tsp45I	GTSAC	1 cut(s)	152
TspRI	CASTG	2 cut(s)	71, 208
Van91I	CCANNNNNTGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.