Rh3DG309100

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006176
Physical Location & Seq
Forward (+)
33149046 .. 33153163
4118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG309100.1

Sequence Viewer

Length: 837 bp
ATGAGACGTGCCCCCTGCTCGGACGATGTTTATGTTGACATCTACTTTGCAGTCTCTCGACATATATTAATTGCTAGAGCAGCATCGCCCGCAGACGTATCAGGGCACCCTCTTGTTAAGGAACCATACAAAGTTACACAAGAGAAAGAACGCAAGAGAGCACTGTCCATGGTCCTTTCTCAAACAAAAAATCAAGAGCGAAAAGATGCGGAGGTTCTTGCTGAAGCCAAGAGAATAGCCGAGTCACGTGCACGCATGGTTGCAAGGAGTGCTAGAGAGTTGGAGTTGCCTGTCACATTCAATGATGAGAGGGGTATTGTTCCTGGTGAAAGTATATCACCATTATCCAGCACTGTTGCAGCTTCAACTTCAATGGATAATACTTCCACTCTAGGCACTCTTCGCCTGCTTCGAGTATATCTTCGAACGTACGCACTTGACCAGATGATCATAGCTGCAAGCTCTTCTGCTGGACTTCGGACTATCAAGCGTGTTGAGCAAAGTTTACAAGAACTTGGGGTTAATTTAAAACCAAGAGTTCCAACTAAAGCTGTTTGTTCGGAGCATCTTGAATTAAGAAAAGAAATACTAACTCTATTGAATCTTCAGAAAGAGTTGCAATATAAGGAGGCAGATGGTTCATCTTATCGTGACAGTACTTACGAAACACCAGGCACACCTAAGGATCGCACGTTTGTTCCCGACTCAATGATGTTTGGAGGTGAAAGAGTTGTTAAACGAGATCAGAAGCGCAAGGGACCTGGTAGGGTATCAGAAGCTCCTTCATCACCTGCGCAGTCTAAAAGGCCAAGAAAGTTAAAGGCAACAGATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

278

Amino Acids

31.0

Weight (kDa)

9.75

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DMAP1 PF05499 155 - 217 2.1e-06 DNA methyltransferase 1-associated protein 1 (DMAP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 799
Acc16I TGCGCA 1 cut(s) 795
Acc36I ACCTGC 1 cut(s) 799
AccB1I GGYRCC 1 cut(s) 105
AciI CCGC 2 cut(s) 90, 209
AclWI GGATC 1 cut(s) 693
AcuI CTGAAG 2 cut(s) 243, 590
AcvI CACGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 431, 658
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 5 cut(s) 301, 366, 372, 572, 601
AjiI CACGTC 1 cut(s) 8
AjnI CCWGG 3 cut(s) 322, 670, 760
AluBI AGCT 5 cut(s) 362, 455, 462, 551, 779
AluI AGCT 5 cut(s) 362, 455, 462, 551, 779
Alw21I GWGCWC 2 cut(s) 163, 253
Alw26I GTCTC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 249
AlwI GGATC 1 cut(s) 693
AoxI GGCC 1 cut(s) 806
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 80, 359, 455
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AseI ATTAAT 1 cut(s) 68
AspLEI GCGC 2 cut(s) 753, 796
AspS9I GGNCC 2 cut(s) 172, 758
AsuHPI GGTGA 4 cut(s) 330, 338, 734, 780
AsuII TTCGAA 1 cut(s) 424
AvaII GGWCC 2 cut(s) 172, 758
AxyI CCTNAGG 1 cut(s) 681
BaeGI GKGCMC 3 cut(s) 13, 108, 253
BanI GGYRCC 1 cut(s) 105
BbrPI CACGTG 1 cut(s) 248
Bbv12I GWGCWC 2 cut(s) 163, 253
BbvI GCAGC 3 cut(s) 92, 371, 442
BccI CCATC 1 cut(s) 629
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 3 cut(s) 324, 672, 762
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 3 cut(s) 75, 273, 392
BfmI CTRYAG 1 cut(s) 833
BfuAI ACCTGC 1 cut(s) 799
BglII AGATCT 1 cut(s) 829
BisI GCNGC 3 cut(s) 81, 360, 456
BlsI GCNGC 3 cut(s) 82, 361, 457
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 3 cut(s) 324, 672, 762
Bme18I GGWCC 2 cut(s) 172, 758
BmgBI CACGTC 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 172, 758
BmiI GGNNCC 3 cut(s) 107, 123, 759
BmrFI CCNGG 3 cut(s) 324, 672, 762
BmsI GCATC 3 cut(s) 92, 196, 574
Bpu14I TTCGAA 1 cut(s) 424
BsaAI YACGTR 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse21I CCTNAGG 1 cut(s) 681
BseBI CCWGG 3 cut(s) 324, 672, 762
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 19
BseSI GKGCMC 3 cut(s) 13, 108, 253
BseXI GCAGC 3 cut(s) 92, 371, 442
BshFI GGCC 1 cut(s) 808
BshNI GGYRCC 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 163, 253
BsiWI CGTACG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 1 cut(s) 808
Bsp119I TTCGAA 1 cut(s) 424
Bsp1286I GDGCHC 4 cut(s) 13, 108, 163, 253
Bsp143I GATC 4 cut(s) 447, 685, 742, 829
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 2 cut(s) 90, 209
BspANI GGCC 1 cut(s) 808
BspLI GGNNCC 3 cut(s) 107, 123, 759
BspMI ACCTGC 1 cut(s) 799
BspPI GGATC 1 cut(s) 693
BspQI GCTCTTC 1 cut(s) 469
BspT104I TTCGAA 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 4 cut(s) 447, 685, 742, 829
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 324, 672, 762
Bst4CI ACNGT 3 cut(s) 165, 355, 656
Bst6I CTCTTC 2 cut(s) 405, 469
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 4 cut(s) 90, 253, 407, 460
BstDEI CTNAG 1 cut(s) 681
BstDSI CCRYGG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 753, 796
BstKTI GATC 4 cut(s) 450, 688, 745, 832
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 4 cut(s) 447, 685, 742, 829
BstMWI GCNNNNNNNGC 5 cut(s) 80, 89, 269, 402, 496
BstNI CCWGG 3 cut(s) 324, 672, 762
BstSCI CCNGG 3 cut(s) 322, 670, 760
BstSFI CTRYAG 1 cut(s) 833
BstSLI GKGCMC 3 cut(s) 13, 108, 253
BstV1I GCAGC 3 cut(s) 92, 371, 442
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
Bsu36I CCTNAGG 1 cut(s) 681
BsuRI GGCC 1 cut(s) 808
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 8
BtsIMutI CAGTG 2 cut(s) 161, 351
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 4 cut(s) 90, 253, 407, 460
CfoI GCGC 2 cut(s) 753, 796
Cfr13I GGNCC 2 cut(s) 172, 758
CsiI ACCWGGT 1 cut(s) 760
Csp6I GTAC 2 cut(s) 430, 657
CviAII CATG 2 cut(s) 169, 256
CviJI RGCY 8 cut(s) 227, 239, 362, 455, 462, 551, 779, 808
CviKI_1 RGCY 8 cut(s) 227, 239, 362, 455, 462, 551, 779, 808
CviQI GTAC 2 cut(s) 430, 657
DdeI CTNAG 1 cut(s) 681
DpnI GATC 4 cut(s) 449, 687, 744, 831
DpnII GATC 4 cut(s) 447, 685, 742, 829
DraI TTTAAA 1 cut(s) 528
Eam1104I CTCTTC 2 cut(s) 405, 469
EarI CTCTTC 2 cut(s) 405, 469
Eco130I CCWWGG 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 172, 758
Eco57I CTGAAG 2 cut(s) 243, 590
Eco72I CACGTG 1 cut(s) 248
Eco81I CCTNAGG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 758
EcoRII CCWGG 3 cut(s) 322, 670, 760
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 172, 259
FaqI GGGAC 1 cut(s) 771
FatI CATG 2 cut(s) 168, 255
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 81, 360, 456
Fsp4HI GCNGC 3 cut(s) 81, 360, 456
FspBI CTAG 3 cut(s) 75, 273, 392
FspI TGCGCA 1 cut(s) 795
GlaI GCGC 2 cut(s) 752, 795
GluI GCNGC 3 cut(s) 81, 360, 456
HaeIII GGCC 1 cut(s) 808
HhaI GCGC 2 cut(s) 753, 796
Hin1II CATG 2 cut(s) 172, 259
Hin6I GCGC 2 cut(s) 751, 794
HinP1I GCGC 2 cut(s) 751, 794
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 3 cut(s) 242, 601, 704
HphI GGTGA 4 cut(s) 330, 338, 734, 780
Hpy166II GTNNAC 3 cut(s) 37, 251, 506
Hpy188I TCNGA 6 cut(s) 22, 480, 562, 609, 747, 775
Hpy188III TCNNGA 5 cut(s) 57, 194, 569, 650, 701
Hpy8I GTNNAC 3 cut(s) 37, 251, 506
HpyAV CCTTC 1 cut(s) 792
HpyCH4III ACNGT 3 cut(s) 165, 355, 656
HpyCH4IV ACGT 5 cut(s) 7, 96, 247, 428, 692
HpyCH4V TGCA 6 cut(s) 50, 251, 263, 359, 458, 619
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 89, 269, 402, 496
HpyF3I CTNAG 1 cut(s) 681
HpySE526I ACGT 5 cut(s) 7, 96, 247, 428, 692
Hsp92II CATG 2 cut(s) 172, 259
HspAI GCGC 2 cut(s) 751, 794
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 4 cut(s) 447, 685, 742, 829
LguI GCTCTTC 1 cut(s) 469
LmnI GCTCC 2 cut(s) 562, 784
Lsp1109I GCAGC 3 cut(s) 92, 371, 442
LweI GCATC 3 cut(s) 92, 196, 574
MabI ACCWGGT 1 cut(s) 760
MaeI CTAG 3 cut(s) 75, 273, 392
MaeII ACGT 5 cut(s) 7, 96, 247, 428, 692
MaeIII GTNAC 4 cut(s) 133, 243, 292, 650
MalI GATC 4 cut(s) 449, 687, 744, 831
MboI GATC 4 cut(s) 447, 685, 742, 829
MboII GAAGA 4 cut(s) 392, 413, 456, 596
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 4 cut(s) 13, 108, 163, 253
MluCI AATT 3 cut(s) 69, 523, 572
MlyI GAGTC 2 cut(s) 251, 698
MmeI TCCRAC 2 cut(s) 261, 566
MnlI CCTC 5 cut(s) 120, 205, 303, 622, 713
MseI TTAA 7 cut(s) 68, 117, 522, 527, 575, 735, 818
MspR9I CCNGG 3 cut(s) 324, 672, 762
MvaI CCWGG 3 cut(s) 324, 672, 762
MwoI GCNNNNNNNGC 5 cut(s) 80, 89, 269, 402, 496
NcoI CCATGG 1 cut(s) 168
NdeII GATC 4 cut(s) 447, 685, 742, 829
NlaIII CATG 2 cut(s) 172, 259
NlaIV GGNNCC 3 cut(s) 107, 123, 759
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 3 cut(s) 243, 292, 650
NsbI TGCGCA 1 cut(s) 795
NspV TTCGAA 1 cut(s) 424
PaqCI CACCTGC 1 cut(s) 799
PciSI GCTCTTC 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PfeI GAWTC 1 cut(s) 601
Pfl23II CGTACG 1 cut(s) 429
PkrI GCNGC 3 cut(s) 82, 361, 457
PleI GAGTC 2 cut(s) 250, 698
PmaCI CACGTG 1 cut(s) 248
PmlI CACGTG 1 cut(s) 248
PpsI GAGTC 2 cut(s) 250, 698
Ppu21I YACGTR 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 758
PshBI ATTAAT 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 758
Psp6I CCWGG 3 cut(s) 322, 670, 760
PspCI CACGTG 1 cut(s) 248
PspGI CCWGG 3 cut(s) 322, 670, 760
PspLI CGTACG 1 cut(s) 429
PspN4I GGNNCC 3 cut(s) 107, 123, 759
PspPI GGNCC 2 cut(s) 172, 758
PspPPI RGGWCCY 1 cut(s) 758
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 2 cut(s) 431, 658
RsaNI GTAC 2 cut(s) 430, 657
SapI GCTCTTC 1 cut(s) 469
SaqAI TTAA 7 cut(s) 68, 117, 522, 527, 575, 735, 818
SatI GCNGC 3 cut(s) 81, 360, 456
Sau3AI GATC 4 cut(s) 447, 685, 742, 829
Sau96I GGNCC 2 cut(s) 172, 758
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 2 cut(s) 251, 698
ScrFI CCNGG 3 cut(s) 324, 672, 762
SduI GDGCHC 4 cut(s) 13, 108, 163, 253
SexAI ACCWGGT 1 cut(s) 760
SfaNI GCATC 3 cut(s) 92, 196, 574
SfcI CTRYAG 1 cut(s) 833
SfuI TTCGAA 1 cut(s) 424
SinI GGWCC 2 cut(s) 172, 758
Sse9I AATT 3 cut(s) 69, 523, 572
SsiI CCGC 2 cut(s) 90, 209
SspMI CTAG 3 cut(s) 75, 273, 392
StyD4I CCNGG 3 cut(s) 322, 670, 760
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 3 cut(s) 165, 355, 656
TaiI ACGT 5 cut(s) 10, 99, 250, 431, 695
TaqI TCGA 3 cut(s) 58, 412, 424
TasI AATT 3 cut(s) 69, 523, 572
TatI WGTACW 1 cut(s) 656
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 7 cut(s) 68, 117, 522, 527, 575, 735, 818
Tru9I TTAA 7 cut(s) 68, 117, 522, 527, 575, 735, 818
TscAI CASTG 2 cut(s) 168, 358
TseFI GTSAC 3 cut(s) 243, 292, 650
TseI GCWGC 3 cut(s) 80, 359, 455
Tsp45I GTSAC 3 cut(s) 243, 292, 650
TspDTI ATGAA 2 cut(s) 630, 774
TspRI CASTG 2 cut(s) 168, 358
VneI GTGCAC 1 cut(s) 249
VpaK11BI GGWCC 2 cut(s) 172, 758
VspI ATTAAT 1 cut(s) 68
XspI CTAG 3 cut(s) 75, 273, 392
ZrmI AGTACT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.