pycom01g02130

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0006176
Physical Location & Seq
Forward (+)
1790287 .. 1793109
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g02130.5

Sequence Viewer

Length: 705 bp
ATGGTTCTCTCTCAAACAAAGCACCAAGAGAGAAAAGACTCGGAGGTTCTGGCTGAAGCCAAAAGAATAGCTGAGTCACGCATGGCTGCAAGGGTAAGTTTACAGAATGCTAAAGAGTCAGAGTTGCCTATAACATTTAATGTGGAGAGGGCTATCGTTCCTGGTGAGACTCTGTCACCTTCATCCAACTCTGAGTTCCCCTCTGCAATGGTTGCACCTTCAACTTCAATGGCAGAGAATACCTCTACTCTAGCTTCTCTCCGAATGCTTCGGGTGTATCTTAGGACATATGCGCTTGACCAAATGATCCAAGCTGCAAGCTCATCTGCTGGACTTCGGACTATCAAGCGGGTCGAGCAAAGTTTGCAAGAACTTGGGGTTAATTTAAAGCCGAGAGTTCCAACTAAATCCGTTTGTGCACAGCATCTTGAATTAAGAAAAGAAATACTGACGCTACTGAATCTTCAGAAACAGTTACAATATAAGGAGGCAGAAGGCTCATCTTATCGTGATAGTCCATACGAAACACCAGGCACACCCAAGGATCGCACTTTTGTCCCTGAATCAACAAGTTTTGGAGGTGATGTATTAGGGGAAAGAGTTGGTAAACGAGACCAAAAACGAAAGGCCCCTGGTAGGGCAGAAGCTCCATCATCGCCTGCGCAGCCTAAAAGGCCTAGAAAGTTAAGGGCATCAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

235

Amino Acids

25.91

Weight (kDa)

9.79

Isoelectric Point (pI)

62.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 663
AciI CCGC 1 cut(s) 349
AclWI GGATC 2 cut(s) 301, 552
AcuI CTGAAG 2 cut(s) 75, 449
AfiI CCNNNNNNNGG 2 cut(s) 636, 637
AgsI TTSAA 3 cut(s) 222, 228, 431
AjnI CCWGG 3 cut(s) 160, 529, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 5 cut(s) 71, 254, 314, 321, 647
AluI AGCT 5 cut(s) 71, 254, 314, 321, 647
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 161, 606
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 2 cut(s) 301, 552
AoxI GGCC 2 cut(s) 627, 674
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 3 cut(s) 86, 314, 664
AspLEI GCGC 2 cut(s) 295, 664
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 3 cut(s) 168, 176, 593
BaeGI GKGCMC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 73, 301, 676
BccI CCATC 1 cut(s) 658
BciT130I CCWGG 3 cut(s) 162, 531, 633
BcoDI GTCTC 2 cut(s) 161, 606
BfaI CTAG 2 cut(s) 251, 678
BglI GCCNNNNNGGC 1 cut(s) 673
BisI GCNGC 3 cut(s) 87, 315, 665
BlsI GCNGC 3 cut(s) 88, 316, 666
Bme1390I CCNGG 3 cut(s) 162, 531, 633
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 3 cut(s) 162, 531, 633
BmsI GCATC 2 cut(s) 433, 701
BplI GAGNNNNNCTC 4 cut(s) 185, 217, 227, 259
BsaI GGTCTC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 540, 631
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 636, 637
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 3 cut(s) 162, 531, 633
BseDI CCNNGG 2 cut(s) 540, 631
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 636, 637
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 63, 183
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 3 cut(s) 73, 301, 676
BshFI GGCC 2 cut(s) 629, 676
BsiHKAI GWGCWC 1 cut(s) 421
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 636, 637
BsmAI GTCTC 2 cut(s) 161, 606
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 2 cut(s) 112, 270
BsnI GGCC 2 cut(s) 629, 676
Bso31I GGTCTC 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 306, 544
BspACI CCGC 1 cut(s) 349
BspANI GGCC 2 cut(s) 629, 676
BspCNI CTCAG 2 cut(s) 64, 184
BspLI GGNNCC 1 cut(s) 630
BspPI GGATC 2 cut(s) 301, 552
BspTNI GGTCTC 1 cut(s) 606
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 540, 631
BssMI GATC 2 cut(s) 306, 544
BssT1I CCWWGG 1 cut(s) 540
Bst2UI CCWGG 3 cut(s) 162, 531, 633
Bst4CI ACNGT 1 cut(s) 474
BstAPI GCANNNNNTGC 2 cut(s) 212, 364
BstC8I GCNNGC 2 cut(s) 319, 660
BstDEI CTNAG 3 cut(s) 72, 192, 281
BstF5I GGATG 1 cut(s) 182
BstHHI GCGC 2 cut(s) 295, 664
BstKTI GATC 2 cut(s) 309, 547
BstMAI GTCTC 2 cut(s) 161, 606
BstMBI GATC 2 cut(s) 306, 544
BstMWI GCNNNNNNNGC 5 cut(s) 212, 355, 364, 664, 673
BstNI CCWGG 3 cut(s) 162, 531, 633
BstSCI CCNGG 3 cut(s) 160, 529, 631
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 3 cut(s) 73, 301, 676
BsuRI GGCC 2 cut(s) 629, 676
BtgZI GCGATG 1 cut(s) 639
BtsCI GGATG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 319, 660
CfoI GCGC 2 cut(s) 295, 664
Cfr13I GGNCC 1 cut(s) 628
CseI GACGC 1 cut(s) 460
CviAII CATG 1 cut(s) 82
DdeI CTNAG 3 cut(s) 72, 192, 281
DpnI GATC 2 cut(s) 308, 546
DpnII GATC 2 cut(s) 306, 544
DraI TTTAAA 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 540
Eco147I AGGCCT 1 cut(s) 676
Eco31I GGTCTC 1 cut(s) 606
Eco57I CTGAAG 2 cut(s) 75, 449
EcoO109I RGGNCCY 1 cut(s) 628
EcoRII CCWGG 3 cut(s) 160, 529, 631
EcoT14I CCWWGG 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 1 cut(s) 85
FaiI YATR 7 cut(s) 83, 131, 289, 291, 483, 520, 701
FaqI GGGAC 1 cut(s) 542
FatI CATG 1 cut(s) 81
FauI CCCGC 1 cut(s) 342
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 87, 315, 665
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 3 cut(s) 87, 315, 665
FspBI CTAG 2 cut(s) 251, 678
FspI TGCGCA 1 cut(s) 663
GlaI GCGC 2 cut(s) 294, 663
GluI GCNGC 3 cut(s) 87, 315, 665
HaeIII GGCC 2 cut(s) 629, 676
HgaI GACGC 1 cut(s) 460
HhaI GCGC 2 cut(s) 295, 664
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 2 cut(s) 293, 662
HinP1I GCGC 2 cut(s) 293, 662
HinfI GANTC 6 cut(s) 38, 74, 116, 169, 460, 563
HphI GGTGA 3 cut(s) 168, 176, 593
Hpy166II GTNNAC 3 cut(s) 101, 419, 608
Hpy188I TCNGA 7 cut(s) 43, 121, 193, 263, 339, 468, 697
Hpy188III TCNNGA 2 cut(s) 428, 509
Hpy8I GTNNAC 3 cut(s) 101, 419, 608
HpyAV CCTTC 3 cut(s) 189, 228, 488
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4V TGCA 6 cut(s) 89, 206, 215, 317, 367, 419
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 355, 364, 664, 673
HpyF3I CTNAG 3 cut(s) 72, 192, 281
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 2 cut(s) 293, 662
Kzo9I GATC 2 cut(s) 306, 544
LmnI GCTCC 1 cut(s) 652
Lsp1109I GCAGC 3 cut(s) 73, 301, 676
LweI GCATC 2 cut(s) 433, 701
MaeI CTAG 2 cut(s) 251, 678
MaeIII GTNAC 3 cut(s) 75, 174, 474
MalI GATC 2 cut(s) 308, 546
MboI GATC 2 cut(s) 306, 544
MboII GAAGA 1 cut(s) 455
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 2 cut(s) 382, 431
MlyI GAGTC 4 cut(s) 32, 83, 125, 163
MmeI TCCRAC 2 cut(s) 210, 425
MnlI CCTC 6 cut(s) 37, 141, 211, 253, 481, 572
MseI TTAA 5 cut(s) 138, 381, 386, 434, 686
MspR9I CCNGG 3 cut(s) 162, 531, 633
Mva1269I GAATGC 2 cut(s) 112, 270
MvaI CCWGG 3 cut(s) 162, 531, 633
MwoI GCNNNNNNNGC 5 cut(s) 212, 355, 364, 664, 673
NdeI CATATG 1 cut(s) 289
NdeII GATC 2 cut(s) 306, 544
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 630
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 75, 174
NsbI TGCGCA 1 cut(s) 663
PceI AGGCCT 1 cut(s) 676
PctI GAATGC 2 cut(s) 112, 270
PfeI GAWTC 2 cut(s) 460, 563
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 3 cut(s) 88, 316, 666
PleI GAGTC 4 cut(s) 32, 82, 124, 163
PpsI GAGTC 4 cut(s) 32, 82, 124, 163
Psp6I CCWGG 3 cut(s) 160, 529, 631
PspGI CCWGG 3 cut(s) 160, 529, 631
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 1 cut(s) 628
PsyI GACNNNGTC 1 cut(s) 172
SaqAI TTAA 5 cut(s) 138, 381, 386, 434, 686
SatI GCNGC 3 cut(s) 87, 315, 665
Sau3AI GATC 2 cut(s) 306, 544
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 4 cut(s) 32, 83, 125, 163
ScrFI CCNGG 3 cut(s) 162, 531, 633
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 2 cut(s) 433, 701
Sse9I AATT 2 cut(s) 382, 431
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 1 cut(s) 349
SspMI CTAG 2 cut(s) 251, 678
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 3 cut(s) 160, 529, 631
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 354
TasI AATT 2 cut(s) 382, 431
TfiI GAWTC 2 cut(s) 460, 563
Tru1I TTAA 5 cut(s) 138, 381, 386, 434, 686
Tru9I TTAA 5 cut(s) 138, 381, 386, 434, 686
TseFI GTSAC 2 cut(s) 75, 174
TseI GCWGC 3 cut(s) 86, 314, 664
Tsp45I GTSAC 2 cut(s) 75, 174
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 400
Tth111I GACNNNGTC 1 cut(s) 172
VneI GTGCAC 1 cut(s) 417
XspI CTAG 2 cut(s) 251, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.