Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007840

Physical Location & Seq

Genomic Coordinates Reverse (-)

4067188 .. 4070362

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTGCTTGTTCTCTACCGCTGCCGGAACTCACGTTTCTCTCACCACAAACCACTCCTAAACGTCGCCTTTCTAGTTCTGGAGTTTCTCTCTCTAAATTCTCTCGTAATGGATATCCGAGGTCTGGTGTTCGATCCCGAATAAGAGCGGTCAAAGAGGAAGGTGTTGTAGTTGAAGAGAGGATCAAGAAAGTCAATGGTGTCGAGTTGGGTGGTAATGGAGCTGCTGCTGCTAGTACTAGTGGTAGCGGTTACGGGTCCAATGGCTCAGTCAACAGCTACTCCAATGGCAGTGCGGGTGTAATTCGTAGTAAGAATGGGGCTGTTAATGGGAGCTTGGTGGAGTTCGTGAGTGGCAATGGAGTGGCAGCGGAAGCGGTGCAAGGAGTTCAAGTGTTGGAGACGAAGGAGGAAGGAAGGAGGAAGAATATTGAGGAAATTGGAAGGGAAGATGCGTGGTTTAAGCAAAGCGGGCTGCCAAAAGTTGAGGTCTCCGTTGCTCCCGGTGGCCGTTGGAGTAGATTTAAAACTTACTCGACAATGCAGAGGACCTTGGAAATATGGGGATTTGTTCTAAAATTCATCATAAAGGCTTGGTTGGGCAATAAAAAATTCACTTATCGAGGGGGAATGACAGAGGAGAAGAAAACCTTGAGGCGTAAGGCACTTGCGAAGTGGCTTAAGGAGAACATTTTGAGATTAGGTCCAACATTCATTAAAATTGGCCAGCAGTTCTCCACAAGGGTGGACATTCTTGCCCAAGAATATCGATCAATTGTCAGAACTTCAGGATCAAGTTCCTCCTTTCCCATCAGATACAGCTGTTTCTATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

279

Amino Acids

30.44

Weight (kDa)

10.2

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64940 AT5G64940
fragaria_vesca	FvH4_1g22080 FvH4_1g22080 FvH4_1g22080 FvH4_1g22080
malus_domestica	MD01G1017900.v1.1 MD15G1334400.v1.1
prunus_persica	Prupe.6G175300_v2.0.a1 Prupe.6G175300_v2.0.a1
pyrus_communis	pycom01g04800 pycom15g29110
rosa_chinensis	RchiOBHm_Chr2g0116161
rosa_laevigata	RLG00000018244
rosa_roxburghii	Rroxscaffold_2G00127450
rosa_rugosa	Rorug02G0203900 Rorug02G0204000 Rorug02G0204100 Rorug02G0204200
rosa_samantha	Rh2AG260300 Rh2BG271400 Rh2CG266500 Rh2DG268500
rosa_wichuraiana	Rw2G020390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	7 cut(s)	20, 149, 249, 296, 371, 377, 471
AclWI	GGATC	3 cut(s)	129, 191, 799
AcoI	YGGCCR	2 cut(s)	508, 724
AcsI	RAATTY	3 cut(s)	98, 578, 611
AcuI	CTGAAG	1 cut(s)	771
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	2 cut(s)	176, 392
AhlI	ACTAGT	1 cut(s)	239
AleI	CACNNNNGTG	1 cut(s)	743
AluBI	AGCT	4 cut(s)	224, 279, 336, 822
AluI	AGCT	4 cut(s)	224, 279, 336, 822
Alw26I	GTCTC	2 cut(s)	395, 496
AlwI	GGATC	3 cut(s)	129, 191, 799
AoxI	GGCC	2 cut(s)	508, 724
ApeKI	GCWGC	7 cut(s)	5, 22, 224, 227, 230, 368, 475
ApoI	RAATTY	3 cut(s)	98, 578, 611
AspS9I	GGNCC	3 cut(s)	258, 549, 704
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	1 cut(s)	36
AvaII	GGWCC	3 cut(s)	258, 549, 704
BaeI	ACNNNNGTAYC	1 cut(s)	808
BalI	TGGCCA	1 cut(s)	726
BbvI	GCAGC	6 cut(s)	9, 211, 214, 217, 380, 462
BccI	CCATC	1 cut(s)	818
BceAI	ACGGC	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	395, 496
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	3 cut(s)	75, 234, 240
BfrI	CTTAAG	1 cut(s)	680
BisI	GCNGC	7 cut(s)	6, 23, 225, 228, 231, 369, 476
BlsI	GCNGC	7 cut(s)	7, 24, 226, 229, 232, 370, 477
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	3 cut(s)	258, 549, 704
BmgT120I	GGNCC	3 cut(s)	258, 549, 704
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	442
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	673
BpuMI	CCSGG	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	769
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	2 cut(s)	119, 552
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	769
BseDI	CCNNGG	2 cut(s)	119, 552
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	6 cut(s)	9, 211, 214, 217, 380, 462
BshFI	GGCC	2 cut(s)	510, 726
BshVI	ATCGAT	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	26, 504
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	395, 496
BsmBI	CGTCTC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	510, 726
Bso31I	GGTCTC	1 cut(s)	496
Bsp143I	GATC	4 cut(s)	134, 183, 770, 791
BspACI	CCGC	7 cut(s)	20, 149, 249, 296, 371, 377, 471
BspANI	GGCC	2 cut(s)	510, 726
BspCNI	CTCAG	1 cut(s)	281
BspDI	ATCGAT	1 cut(s)	769
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	3 cut(s)	129, 191, 799
BspTI	CTTAAG	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	496
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	119, 552
BssMI	GATC	4 cut(s)	134, 183, 770, 791
BssT1I	CCWWGG	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	473, 728
BstDEI	CTNAG	1 cut(s)	268
BstKTI	GATC	4 cut(s)	137, 186, 773, 794
BstMAI	GTCTC	2 cut(s)	395, 496
BstMBI	GATC	4 cut(s)	134, 183, 770, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 374, 472
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	6 cut(s)	9, 211, 214, 217, 380, 462
BstXI	CCANNNNNNTGG	1 cut(s)	745
Bsu15I	ATCGAT	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	510, 726
BsuTUI	ATCGAT	1 cut(s)	769
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	473, 728
Cfr13I	GGNCC	3 cut(s)	258, 549, 704
ClaI	ATCGAT	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	237
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	4 cut(s)	136, 185, 772, 793
DpnII	GATC	4 cut(s)	134, 183, 770, 791
DraI	TTTAAA	1 cut(s)	526
EaeI	YGGCCR	2 cut(s)	508, 724
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	552
Eco31I	GGTCTC	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	3 cut(s)	258, 549, 704
Eco57I	CTGAAG	1 cut(s)	771
EcoO109I	RGGNCCY	1 cut(s)	549
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
Esp3I	CGTCTC	1 cut(s)	395
FaiI	YATR	2 cut(s)	562, 587
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FauI	CCCGC	2 cut(s)	289, 464
Fnu4HI	GCNGC	7 cut(s)	6, 23, 225, 228, 231, 369, 476
Fsp4HI	GCNGC	7 cut(s)	6, 23, 225, 228, 231, 369, 476
FspBI	CTAG	3 cut(s)	75, 234, 240
GluI	GCNGC	7 cut(s)	6, 23, 225, 228, 231, 369, 476
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	510, 726
HapII	CCGG	2 cut(s)	26, 504
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	26, 504
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	274, 748
Hpy188I	TCNGA	3 cut(s)	120, 782, 815
Hpy188III	TCNNGA	5 cut(s)	81, 138, 187, 349, 789
Hpy8I	GTNNAC	2 cut(s)	274, 748
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	5 cut(s)	155, 400, 407, 411, 438
HpyCH4IV	ACGT	2 cut(s)	35, 64
HpyCH4V	TGCA	2 cut(s)	382, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 374, 472
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	2 cut(s)	35, 64
Kzo9I	GATC	4 cut(s)	134, 183, 770, 791
LmnI	GCTCC	3 cut(s)	221, 333, 505
LpnPI	CCDG	6 cut(s)	39, 66, 111, 517, 740, 774
Lsp1109I	GCAGC	6 cut(s)	9, 211, 214, 217, 380, 462
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	75, 234, 240
MaeII	ACGT	2 cut(s)	35, 64
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	4 cut(s)	136, 185, 772, 793
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	4 cut(s)	134, 183, 770, 791
MboII	GAAGA	4 cut(s)	188, 436, 461, 655
MfeI	CAATTG	1 cut(s)	774
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	7 cut(s)	98, 303, 438, 578, 611, 720, 774
MluNI	TGGCCA	1 cut(s)	726
MmeI	TCCRAC	3 cut(s)	378, 494, 731
Mox20I	TGGCCA	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	726
MseI	TTAA	5 cut(s)	327, 462, 525, 681, 717
MslI	CAYNNNNRTG	1 cut(s)	743
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	3 cut(s)	22, 371, 822
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	2 cut(s)	26, 504
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	1 cut(s)	774
MwoI	GCNNNNNNNGC	3 cut(s)	230, 374, 472
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	4 cut(s)	134, 183, 770, 791
NlaIV	GGNNCC	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	743
PkrI	GCNGC	7 cut(s)	7, 24, 226, 229, 232, 370, 477
PpuMI	RGGWCCY	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	3 cut(s)	258, 549, 704
PspPPI	RGGWCCY	1 cut(s)	549
PvuII	CAGCTG	1 cut(s)	822
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	743
SaqAI	TTAA	5 cut(s)	327, 462, 525, 681, 717
SatI	GCNGC	7 cut(s)	6, 23, 225, 228, 231, 369, 476
Sau3AI	GATC	4 cut(s)	134, 183, 770, 791
Sau96I	GGNCC	3 cut(s)	258, 549, 704
ScaI	AGTACT	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	504
SfaNI	GCATC	1 cut(s)	442
SinI	GGWCC	3 cut(s)	258, 549, 704
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	2 cut(s)	652, 680
SmoI	CTYRAG	2 cut(s)	652, 680
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	7 cut(s)	98, 303, 438, 578, 611, 720, 774
SsiI	CCGC	7 cut(s)	20, 149, 249, 296, 371, 377, 471
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	3 cut(s)	75, 234, 240
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	552
TaiI	ACGT	2 cut(s)	38, 67
TaqI	TCGA	5 cut(s)	133, 204, 536, 622, 769
TasI	AATT	7 cut(s)	98, 303, 438, 578, 611, 720, 774
TatI	WGTACW	1 cut(s)	236
Tru1I	TTAA	5 cut(s)	327, 462, 525, 681, 717
Tru9I	TTAA	5 cut(s)	327, 462, 525, 681, 717
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	7 cut(s)	5, 22, 224, 227, 230, 368, 475
TspDTI	ATGAA	2 cut(s)	571, 703
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	298
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	3 cut(s)	258, 549, 704
XapI	RAATTY	3 cut(s)	98, 578, 611
XspI	CTAG	3 cut(s)	75, 234, 240
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.