Rorug02G0204200

aarF domain-containing protein kinase At1g79600

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007840
Physical Location & Seq
Forward (+)
19141112 .. 19142382
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0204200.1

Sequence Viewer

Length: 756 bp
ATGCCTCCTCCTGAGCGTTTTGAGCTAGTTGAAACAGATCAGGGAAAGCAAAAGTATCCAGAGGATGCCTATGAACCTCAAATCACTGAAACTACTGCTCCTGAAATTCAAATTTCAGAACTGAGAGAGGATCAGGCTTCAGAGATTAGAGATGATTTTCCAGGCAGTCCCATCCATGAGGAAGAGGCTAAAGATCCAGAGGAGAAAGAGAAGGAGAATGAAGTTAAGTTTGGTCTGGCAGTACTTCCTCTGACCGCTGCTCAACAAAGGCTGCAAGCTGCACTTGAGCTGCTCAGGTCCCCTTCTAGTTCTAGTCCACACTCACCAGAGGTTGCAGCAGCTAAGGCCACCCTCCTGGAATTGATCAAAAAGCCTATAGATGAAGTGGTTGACCATGATCATGATCTAGAGTCCAGATTTCATTCTGCATGTACACTCTTAGTCAAGCAGCAAGTGCTTTCTGCTGGGGTTGTCCAGGGACTTGATGCGCTATTGGTAGAGCTTTGTGGCTCTAATCAGCGTTGTTGTACCATAACTGCAGATTTGGCTGCACAGAAAGATAAACATGATCAAGAAGCCTCTATTGCCAACTCATTTGAGTCTCTTGCCAAGATATGTGTTCAGCAAGCACAAAGTTCACATCAACATGCAGAGAGGATTATGTTGCTCAGGCAAGAACTGTTGCTTGAAGAAGAGGCTAAAGCTAAGTTGGATCAAGAGCTGGACGACAACCTCAAACAGCTAGACCCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

251

Amino Acids

27.94

Weight (kDa)

4.6

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 754
AciI CCGC 1 cut(s) 255
AclWI GGATC 3 cut(s) 138, 188, 720
AcsI RAATTY 2 cut(s) 105, 111
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 3 cut(s) 243, 433, 529
AgsI TTSAA 3 cut(s) 32, 110, 689
AjnI CCWGG 3 cut(s) 160, 354, 474
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 8 cut(s) 25, 278, 289, 341, 502, 704, 721, 742
AluI AGCT 8 cut(s) 25, 278, 289, 341, 502, 704, 721, 742
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 3 cut(s) 138, 188, 720
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 8 cut(s) 257, 271, 278, 289, 335, 338, 448, 548
ApoI RAATTY 2 cut(s) 105, 111
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 315
AvaII GGWCC 1 cut(s) 297
BbvI GCAGC 8 cut(s) 244, 258, 265, 276, 347, 350, 460, 535
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 3 cut(s) 162, 356, 476
BciVI GTATCC 1 cut(s) 66
BclI TGATCA 3 cut(s) 363, 397, 568
BcoDI GTCTC 1 cut(s) 606
BfaI CTAG 5 cut(s) 26, 306, 312, 407, 743
BfmI CTRYAG 2 cut(s) 375, 537
BfuI GTATCC 1 cut(s) 66
BisI GCNGC 8 cut(s) 258, 272, 279, 290, 336, 339, 449, 549
BlsI GCNGC 8 cut(s) 259, 273, 280, 291, 337, 340, 450, 550
BmcAI AGTACT 1 cut(s) 243
Bme1390I CCNGG 3 cut(s) 162, 356, 476
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 3 cut(s) 162, 356, 476
BmsI GCATC 2 cut(s) 55, 475
Bpu10I CCTNAGC 4 cut(s) 12, 293, 342, 668
BpuEI CTTGAG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 3 cut(s) 162, 356, 476
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 70, 171
BseJI GATNNNNATC 1 cut(s) 402
BseMII CTCAG 3 cut(s) 113, 307, 682
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 8 cut(s) 244, 258, 265, 276, 347, 350, 460, 535
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 2 cut(s) 264, 534
BshFI GGCC 1 cut(s) 347
BslFI GGGAC 3 cut(s) 153, 283, 492
BsmAI GTCTC 1 cut(s) 606
BsmFI GGGAC 3 cut(s) 153, 283, 492
BsnI GGCC 1 cut(s) 347
Bsp1407I TGTACA 1 cut(s) 431
Bsp143I GATC 8 cut(s) 37, 130, 193, 363, 397, 403, 568, 712
BspACI CCGC 1 cut(s) 255
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 4 cut(s) 4, 114, 306, 681
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 299
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 3 cut(s) 138, 188, 720
BsrGI TGTACA 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 8 cut(s) 37, 130, 193, 363, 397, 403, 568, 712
Bst2UI CCWGG 3 cut(s) 162, 356, 476
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 2 cut(s) 177, 687
BstAPI GCANNNNNTGC 1 cut(s) 454
BstAUI TGTACA 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 276, 627
BstDEI CTNAG 7 cut(s) 12, 122, 293, 342, 439, 668, 705
BstF5I GGATG 2 cut(s) 70, 171
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 8 cut(s) 40, 133, 196, 366, 400, 406, 571, 715
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 8 cut(s) 37, 130, 193, 363, 397, 403, 568, 712
BstMWI GCNNNNNNNGC 5 cut(s) 22, 344, 454, 545, 584
BstNI CCWGG 3 cut(s) 162, 356, 476
BstNSI RCATGY 2 cut(s) 432, 650
BstSCI CCNGG 3 cut(s) 160, 354, 474
BstSFI CTRYAG 2 cut(s) 375, 537
BstV1I GCAGC 8 cut(s) 244, 258, 265, 276, 347, 350, 460, 535
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 193
BsuI GTATCC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 347
BtsCI GGATG 2 cut(s) 70, 171
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 276, 627
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 3 cut(s) 242, 432, 528
CviAII CATG 6 cut(s) 176, 395, 401, 429, 566, 647
CviQI GTAC 3 cut(s) 242, 432, 528
DdeI CTNAG 7 cut(s) 12, 122, 293, 342, 439, 668, 705
DpnI GATC 8 cut(s) 39, 132, 195, 365, 399, 405, 570, 714
DpnII GATC 8 cut(s) 37, 130, 193, 363, 397, 403, 568, 712
Eam1104I CTCTTC 2 cut(s) 177, 687
EarI CTCTTC 2 cut(s) 177, 687
Eco47I GGWCC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 297
EcoRII CCWGG 3 cut(s) 160, 354, 474
FaeI CATG 6 cut(s) 179, 398, 404, 432, 569, 650
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 3 cut(s) 153, 283, 492
FatI CATG 6 cut(s) 175, 394, 400, 428, 565, 646
FbaI TGATCA 3 cut(s) 363, 397, 568
Fnu4HI GCNGC 8 cut(s) 258, 272, 279, 290, 336, 339, 449, 549
FokI GGATG 2 cut(s) 77, 158
Fsp4HI GCNGC 8 cut(s) 258, 272, 279, 290, 336, 339, 449, 549
FspBI CTAG 5 cut(s) 26, 306, 312, 407, 743
GlaI GCGC 1 cut(s) 489
GluI GCNGC 8 cut(s) 258, 272, 279, 290, 336, 339, 449, 549
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 1 cut(s) 347
HhaI GCGC 1 cut(s) 490
Hin1II CATG 6 cut(s) 179, 398, 404, 432, 569, 650
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 410, 599
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 4 cut(s) 317, 391, 434, 638
Hpy188I TCNGA 3 cut(s) 118, 142, 252
Hpy188III TCNNGA 9 cut(s) 11, 59, 101, 197, 401, 407, 414, 572, 716
Hpy8I GTNNAC 4 cut(s) 317, 391, 434, 638
HpyAV CCTTC 2 cut(s) 205, 312
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4V TGCA 7 cut(s) 274, 281, 335, 428, 539, 551, 650
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 344, 454, 545, 584
HpyF3I CTNAG 7 cut(s) 12, 122, 293, 342, 439, 668, 705
Hsp92II CATG 6 cut(s) 179, 398, 404, 432, 569, 650
HspAI GCGC 1 cut(s) 488
Ksp22I TGATCA 3 cut(s) 363, 397, 568
Kzo9I GATC 8 cut(s) 37, 130, 193, 363, 397, 403, 568, 712
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 8 cut(s) 244, 258, 265, 276, 347, 350, 460, 535
LweI GCATC 2 cut(s) 55, 475
MaeI CTAG 5 cut(s) 26, 306, 312, 407, 743
MalI GATC 8 cut(s) 39, 132, 195, 365, 399, 405, 570, 714
MboI GATC 8 cut(s) 37, 130, 193, 363, 397, 403, 568, 712
MboII GAAGA 3 cut(s) 194, 701, 704
MflI RGATCY 1 cut(s) 193
MluCI AATT 3 cut(s) 105, 111, 359
MlyI GAGTC 2 cut(s) 419, 608
MmeI TCCRAC 1 cut(s) 690
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 399, 645
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 3 cut(s) 162, 356, 476
MvaI CCWGG 3 cut(s) 162, 356, 476
MwoI GCNNNNNNNGC 5 cut(s) 22, 344, 454, 545, 584
NdeII GATC 8 cut(s) 37, 130, 193, 363, 397, 403, 568, 712
NlaIII CATG 6 cut(s) 179, 398, 404, 432, 569, 650
NlaIV GGNNCC 1 cut(s) 299
NspI RCATGY 2 cut(s) 432, 650
PagI TCATGA 1 cut(s) 400
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 8 cut(s) 259, 273, 280, 291, 337, 340, 450, 550
PleI GAGTC 2 cut(s) 418, 607
PpsI GAGTC 2 cut(s) 418, 607
PpuMI RGGWCCY 1 cut(s) 297
PsiI TTATAA 1 cut(s) 754
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 3 cut(s) 160, 354, 474
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 3 cut(s) 160, 354, 474
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 297
PspPPI RGGWCCY 1 cut(s) 297
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 243, 433, 529
RsaNI GTAC 3 cut(s) 242, 432, 528
RseI CAYNNNNRTG 2 cut(s) 399, 645
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 8 cut(s) 258, 272, 279, 290, 336, 339, 449, 549
Sau3AI GATC 8 cut(s) 37, 130, 193, 363, 397, 403, 568, 712
Sau96I GGNCC 1 cut(s) 297
ScaI AGTACT 1 cut(s) 243
SchI GAGTC 2 cut(s) 419, 608
ScrFI CCNGG 3 cut(s) 162, 356, 476
SfaNI GCATC 2 cut(s) 55, 475
SfcI CTRYAG 2 cut(s) 375, 537
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 399, 645
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 3 cut(s) 105, 111, 359
SsiI CCGC 1 cut(s) 255
SspMI CTAG 5 cut(s) 26, 306, 312, 407, 743
StyD4I CCNGG 3 cut(s) 160, 354, 474
TaaI ACNGT 1 cut(s) 681
TasI AATT 3 cut(s) 105, 111, 359
TatI WGTACW 2 cut(s) 241, 431
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 91
TseI GCWGC 8 cut(s) 257, 271, 278, 289, 335, 338, 448, 548
TspDTI ATGAA 4 cut(s) 87, 234, 396, 410
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 2 cut(s) 105, 111
XbaI TCTAGA 1 cut(s) 406
XceI RCATGY 2 cut(s) 432, 650
XspI CTAG 5 cut(s) 26, 306, 312, 407, 743
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.