Rorug02G0204000

aarF domain-containing protein kinase At1g79600

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007840
Physical Location & Seq
Reverse (-)
19111960 .. 19113852
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0204000.1

Sequence Viewer

Length: 507 bp
ATGGCATGGAGCTTGTCTACTGGTTTAGGGGGCTGGTCTACTATTGATGTATGGATCCGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAATCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCTTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGAACAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAGAAACCAGGGCAGATGGAAACGGGGCAGAGCATGCATTGCTACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCACCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

168

Amino Acids

18.18

Weight (kDa)

6.04

Isoelectric Point (pI)

22.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 17, 38
AclWI GGATC 4 cut(s) 49, 62, 92, 253
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 110, 143, 179
AjnI CCWGG 2 cut(s) 70, 296
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 2 cut(s) 12, 175
AluI AGCT 2 cut(s) 12, 175
Alw21I GWGCWC 2 cut(s) 379, 423
Alw44I GTGCAC 1 cut(s) 419
AlwI GGATC 4 cut(s) 49, 62, 92, 253
AoxI GGCC 1 cut(s) 442
ApaLI GTGCAC 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 88, 116
AspLEI GCGC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 423
BamHI GGATCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 379, 423
BbvI GCAGC 2 cut(s) 100, 128
BccI CCATC 2 cut(s) 69, 299
BciT130I CCWGG 2 cut(s) 72, 298
BfaI CTAG 1 cut(s) 435
BisI GCNGC 2 cut(s) 89, 117
BlsI GCNGC 2 cut(s) 90, 118
Bme1390I CCNGG 2 cut(s) 72, 298
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 72, 298
BmsI GCATC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 195
BpuEI CTTGAG 2 cut(s) 87, 363
BsaBI GATNNNNATC 1 cut(s) 490
BsaJI CCNNGG 3 cut(s) 58, 297, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 2 cut(s) 326, 368
Bse8I GATNNNNATC 1 cut(s) 490
BseBI CCWGG 2 cut(s) 72, 298
BseDI CCNNGG 3 cut(s) 58, 297, 445
BseGI GGATG 1 cut(s) 80
BseJI GATNNNNATC 1 cut(s) 490
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 2 cut(s) 326, 368
BseNI ACTGG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 2 cut(s) 100, 128
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 1 cut(s) 444
BsiHKAI GWGCWC 2 cut(s) 379, 423
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 1 cut(s) 444
Bsp1286I GDGCHC 3 cut(s) 225, 379, 423
Bsp143I GATC 3 cut(s) 54, 97, 245
BspANI GGCC 1 cut(s) 444
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 4 cut(s) 49, 62, 92, 253
BspQI GCTCTTC 1 cut(s) 128
BsrDI GCAATG 2 cut(s) 326, 368
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 58, 297, 445
BssMI GATC 3 cut(s) 54, 97, 245
BssT1I CCWWGG 1 cut(s) 445
Bst2UI CCWGG 2 cut(s) 72, 298
Bst6I CTCTTC 1 cut(s) 128
BstAPI GCANNNNNTGC 3 cut(s) 85, 323, 328
BstC8I GCNNGC 3 cut(s) 66, 324, 375
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 3 cut(s) 57, 100, 248
BstMBI GATC 3 cut(s) 54, 97, 245
BstMWI GCNNNNNNNGC 3 cut(s) 85, 323, 328
BstNI CCWGG 2 cut(s) 72, 298
BstNSI RCATGY 2 cut(s) 68, 326
BstSCI CCNGG 2 cut(s) 70, 296
BstSLI GKGCMC 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 100, 128
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 80
Cac8I GCNNGC 3 cut(s) 66, 324, 375
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 266
CseI GACGC 1 cut(s) 290
CviAII CATG 6 cut(s) 6, 65, 95, 125, 191, 323
CviJI RGCY 9 cut(s) 12, 33, 91, 119, 138, 175, 206, 223, 444
CviKI_1 RGCY 9 cut(s) 12, 33, 91, 119, 138, 175, 206, 223, 444
DdeI CTNAG 1 cut(s) 195
DpnI GATC 3 cut(s) 56, 99, 247
DpnII GATC 3 cut(s) 54, 97, 245
DraI TTTAAA 2 cut(s) 405, 490
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 445
Eco147I AGGCCT 1 cut(s) 444
Eco24I GRGCYC 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 70, 296
EcoT14I CCWWGG 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 6 cut(s) 9, 68, 98, 128, 194, 326
FatI CATG 6 cut(s) 5, 64, 94, 124, 190, 322
FblI GTMKAC 2 cut(s) 17, 38
Fnu4HI GCNGC 2 cut(s) 89, 117
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 89, 117
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 265
GluI GCNGC 2 cut(s) 89, 117
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 444
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 266
Hin1II CATG 6 cut(s) 9, 68, 98, 128, 194, 326
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 2 cut(s) 212, 466
Hpy166II GTNNAC 3 cut(s) 18, 39, 421
Hpy188III TCNNGA 3 cut(s) 95, 110, 179
Hpy8I GTNNAC 3 cut(s) 18, 39, 421
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 149
HpyCH4V TGCA 4 cut(s) 88, 116, 326, 421
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 323, 328
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 6 cut(s) 9, 68, 98, 128, 194, 326
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 54, 97, 245
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 2 cut(s) 9, 73
LpnPI CCDG 9 cut(s) 6, 19, 57, 84, 283, 310, 357, 369, 408
Lsp1109I GCAGC 2 cut(s) 100, 128
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 435
MalI GATC 3 cut(s) 56, 99, 247
MboI GATC 3 cut(s) 54, 97, 245
MboII GAAGA 3 cut(s) 145, 421, 424
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 3 cut(s) 225, 379, 423
MluCI AATT 2 cut(s) 154, 429
MnlI CCTC 5 cut(s) 102, 111, 196, 434, 480
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 2 cut(s) 404, 489
MspR9I CCNGG 2 cut(s) 72, 298
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 2 cut(s) 72, 298
MwoI GCNNNNNNNGC 3 cut(s) 85, 323, 328
NdeII GATC 3 cut(s) 54, 97, 245
NlaIII CATG 6 cut(s) 9, 68, 98, 128, 194, 326
NlaIV GGNNCC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 2 cut(s) 68, 326
PaeI GCATGC 2 cut(s) 68, 326
PagI TCATGA 1 cut(s) 94
PceI AGGCCT 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 212, 466
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 2 cut(s) 90, 118
Psp6I CCWGG 2 cut(s) 70, 296
PspGI CCWGG 2 cut(s) 70, 296
PspN4I GGNNCC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 404, 489
SatI GCNGC 2 cut(s) 89, 117
Sau3AI GATC 3 cut(s) 54, 97, 245
ScrFI CCNGG 2 cut(s) 72, 298
SduI GDGCHC 3 cut(s) 225, 379, 423
SetI ASST 5 cut(s) 14, 177, 397, 403, 426
SfaNI GCATC 1 cut(s) 103
SmiI ATTTAAAT 1 cut(s) 490
SmlI CTYRAG 2 cut(s) 102, 378
SmoI CTYRAG 2 cut(s) 102, 378
SphI GCATGC 2 cut(s) 68, 326
Sse9I AATT 2 cut(s) 154, 429
SseBI AGGCCT 1 cut(s) 444
SspMI CTAG 1 cut(s) 435
StuI AGGCCT 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 70, 296
StyI CCWWGG 1 cut(s) 445
SwaI ATTTAAAT 1 cut(s) 490
TasI AATT 2 cut(s) 154, 429
TfiI GAWTC 2 cut(s) 212, 466
Tru1I TTAA 2 cut(s) 404, 489
Tru9I TTAA 2 cut(s) 404, 489
TseI GCWGC 2 cut(s) 88, 116
TspDTI ATGAA 2 cut(s) 147, 204
TspGWI ACGGA 1 cut(s) 47
VneI GTGCAC 1 cut(s) 419
XceI RCATGY 2 cut(s) 68, 326
XmiI GTMKAC 2 cut(s) 17, 38
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.