pycom01g13980

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011910
Physical Location & Seq
Reverse (-)
14297594 .. 14300288
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2460 bp
ATGGCCCTGAGCTCCACCGGATCGAAACGCTGCCGTTCCCTTGAATCTAAAGTAAACGCAGCGTTTCGAGCTTCCCCAAACTTCAAACACCGAGCATTTTCTTCTTCTTCTTCAACCGACTGCAACTTACACTCGCAATCCATGGCAGCTCCAACTCAAGCCCTAACTCAGCGTCAACTCCTCAAAACCCTAACCAACCTCTTGACCTCCACAAAAATCCTAAACCCAGAACCTCTAAAACCCTACATTCCTCACCTGACCCAACCCCTCCTCCTCTCCATCATCTCCTCCAAAGCCCTAGCTTCTCAACCCACGGCCCTCCTCTTCTTCTTCCGGTGGGTCCAGGATCACACGCCCTCCCTAACCCAATCCCCACAGACCCTCCTCGCCCTCCTCCCCTCCCTCTTCACCCACCACAAGTTCTCCGACGCCAAAGCCCTCCTCGTCCAATTCATCGCCGCCGATCGCAAGATCGATCTCCACCGCCTCATTCTTCACCCGGACCCCACCGTGCCGAAGCCCTCGAAGGCCCTTCTGGACACTTCCATTGGGGCATATGTGGAATCTGGGAAACCCCACCTTGCAGCCCAAGTGTTTGATAAAATGAAAGGGCTTCGGCTTCAGCCCAATTTGCTCACCTGCAATACTCTGATTAATGGTCTGGTAAGGTACGGGTCATCGCATTCGATTTCGTTGTCTAGAGGTGTGTTTAAGCATGCTGTTGAGTTAGGGGTTAAAGTGAATACGAATACTTTTAACATTTTGATATGTGGGTATTGCTTGGAGCATAAGTTTAGGGATGCTGTAGAGTTGTTGAGTAGGATGAGTGAATTCAGATGCGTGCCCGATAATGTGAGCTATAATACGATATTGAACTGGCTGTGTAAAAAGGGGCAGTTGAGTGAAGCCCGGGATTTGTTGTTGGACATGAAGAATCGAGGGTTGTTTCCGAATAGGAACACATATAACATTTTGGTTTGTGGGTATTGTAAGATGGGGTGGTTGAAGGAGGCAATGCAGGTGATCGAGTTGATGACACAGAACAGTTTGTTGCCGGATATTTGGACGTACAATGTCTTGATTAAGGGGTTGTGTAGGGAGGGTAGGATTGAGGAGGCTCTGAGGCTTCGGGTTGAGATGGAAAATTTGAAGTTGATGCCTGATGTTGTCACGTATAACACATTGATTGATGGGTATTTTGAGTGGAGCAGTGATTCAGAGGCCCTTAAGTTGGTTGAGGAGATGCGTGAAAAGGGAGTGAAAGCAAATGCAGTTACTTACAATATAATAGTAAAGTGGTTCTGTAAAGAAGGGAAGCTGGATGAAGCCAGTGATACTATAAGGAAGATGGAGGAAGATGGGTTTGCTCCTGATTGTGTCACTTATAATACTTTGATTAACGAGTATTGCAAGGCAGGGAAAATGGCAGAAGCATTTAAAATGATGAATGAGATGGGTACGAAAGGTTTGAAGATGGACATCTTTACTCTCAATACTCTTCTTTACACTCTCTGCAGTGAGAAGAAGCTAGACAAGGCATTTGACTTGCTTCGTACTGCAACTAAGCGGGGTTATATTCTTGATGAGGTAAGCTATGGAACCTTGATCACGGGATGCTTTAAGAACGAAAAGGCCAACAAGGGTTTCAAGCTTTGGGATGAGATGAAAGAGAAGCAGGTTGTTCCCAGCATTGTCACCTATAACACTATAATTGGAGGCCTCTGCCAGTCTGGAAAAACTGATCGATCATTCGACAAGTTGAATGAGCTTCTAGAGAGGGGTCTAGTCCCTGATGGAACTACATACAACACGATAATTCATGGTTACTGCCGTGAGGGGAATGTTGAGAAAGCATTTCAGTTCCACAACAAAATGGTTGAGGAATCATTCAAGCCAGATGTCTATACATGTAATATTCTTCTTTGTGGGCTATGTAGAGAGGGTATGTTAGAAAAAGCTCTTAAGCTTTTTTACACATGGATTTCGAAAGGGAAAGACATTGATGCAGTTACTTACAACACATTGATATCAAGCCTTTGCAAAGAAGGAAGGTTTGATGATGTTTTTGCTCTTTTTTCGGAAATGGAAGAAAACAAATTAGCGCCAGACCAATATACATACACTGCCATTCTGGGTGCACTTACGGATACTGGTAGGATTAAGGAAGCAGAAGAATTTATTTTGAAAATGATTGATATGGGAAAGTTACCTGATTGGCCCCCAGAATTGGAGAAGATTAAAAATGGAGTGGCCGAATCTTCAGTTGAATATGATTCAAGCACAGGAGCCTATTCAGAAAAAATCATTGAGTGTTGCTTTCAAGGTAAATATAAGGATGCAATGCACATTTTGGAAGAATCAATGCAGAAAGGCATGACGTTAAGTAAAGATGTTTACATTAATTTGATGAATGGGCTGATTAAGAGGCGAAAAAGTATATCAAAGGCTGTTAAGCTGTAG

Protein Analysis

820

Amino Acids

92.58

Weight (kDa)

8.53

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 183 - 223 2.5e-07 PPR repeat family
PPR_3 PF13812 236 - 293 6.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 244 - 276 1.3e-07 PPR repeat
PPR_2 PF13041 248 - 287 1.7e-07 PPR repeat family
PPR_1 PF12854 280 - 311 7.9e-08 PPR repeat
PPR_2 PF13041 282 - 331 3.4e-18 PPR repeat family
PPR PF01535 285 - 315 8.2e-07 PPR repeat
PPR_3 PF13812 306 - 362 2.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 313 - 345 8.7e-11 PPR repeat
PPR PF01535 321 - 348 3.3e-06 PPR repeat
PPR_2 PF13041 321 - 366 3.2e-13 PPR repeat family
PPR_1 PF12854 350 - 381 9.1e-12 PPR repeat
PPR_2 PF13041 352 - 399 3e-16 PPR repeat family
PPR PF01535 356 - 382 4e-07 PPR repeat
PPR_3 PF13812 378 - 435 5.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 385 - 416 1e-06 PPR repeat
PPR_2 PF13041 387 - 436 1.8e-15 PPR repeat family
PPR PF01535 390 - 420 3.3e-06 PPR repeat
PPR_long PF17177 407 - 501 1.5e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 418 - 451 9.6e-10 PPR repeat
PPR_2 PF13041 423 - 467 5.1e-14 PPR repeat family
PPR PF01535 425 - 455 2e-06 PPR repeat
TPR_24 PF23276 439 - 552 1.3e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 448 - 503 5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 454 - 485 2.5e-14 PPR repeat
PPR_2 PF13041 457 - 505 8.3e-16 PPR repeat family
PPR PF01535 460 - 490 2.4e-08 PPR repeat
PPR_1 PF12854 488 - 518 5.3e-06 PPR repeat
PPR_2 PF13041 493 - 541 6.5e-09 PPR repeat family
PPR_long PF17177 505 - 641 9.8e-09 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 513 - 624 6.3e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 516 - 572 8.8e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 528 - 576 4.1e-15 PPR repeat family
PPR_1 PF12854 559 - 589 1.1e-07 PPR repeat
PPR_2 PF13041 562 - 603 9.2e-10 PPR repeat family
PPR_3 PF13812 588 - 641 8.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 593 - 626 1.6e-13 PPR repeat
PPR_2 PF13041 597 - 646 8.2e-19 PPR repeat family
PPR PF01535 601 - 629 1e-08 PPR repeat
PPR_1 PF12854 630 - 657 9.1e-08 PPR repeat
PPR_2 PF13041 632 - 657 7.1e-06 PPR repeat family
PPR_3 PF13812 664 - 714 1.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 665 - 696 4.1e-11 PPR repeat
PPR_2 PF13041 668 - 714 2.4e-16 PPR repeat family
PPR PF01535 670 - 699 4.8e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16880
fragaria_vesca FvH4_7g20132
malus_domestica MD01G1131000.v1.1 MD07G1179000.v1.1
prunus_persica Prupe.2G218100_v2.0.a1 Prupe.2G218100_v2.0.a1
pyrus_communis pycom01g13980 pycom07g17270
rosa_chinensis RchiOBHm_Chr1g0364091
rosa_laevigata RLG00000027517
rosa_multiflora Rmu_sc0000071.1_g000021 Rmu_sc0011704.1_g000001
rosa_roxburghii Rroxscaffold_4G00292650
rosa_rugosa Rorug01G0313500
rosa_samantha Rh1AG320900 Rh1BG284100 Rh1CG300500 Rh1DG315500
rosa_wichuraiana Rw1G028450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1386
AarI CACCTGC 2 cut(s) 647, 1009
Acc36I ACCTGC 3 cut(s) 647, 1009, 1666
AciI CCGC 3 cut(s) 459, 484, 1567
AclWI GGATC 2 cut(s) 28, 354
AcoI YGGCCR 1 cut(s) 2250
AcsI RAATTY 3 cut(s) 830, 1144, 2174
AcuI CTGAAG 2 cut(s) 605, 2244
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 4 cut(s) 671, 1070, 1459, 1555
AfiI CCNNNNNNNGG 2 cut(s) 1231, 2227
AflII CTTAAG 2 cut(s) 1226, 1961
AflIII ACRYGT 1 cut(s) 1907
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 1628, 1660
Alw21I GWGCWC 2 cut(s) 14, 2140
Alw44I GTGCAC 1 cut(s) 2136
AlwI GGATC 2 cut(s) 28, 354
Ama87I CYCGRG 1 cut(s) 909
AoxI GGCC 8 cut(s) 3, 315, 528, 1221, 1632, 1717, 2216, 2250
ApaLI GTGCAC 1 cut(s) 2136
ApeKI GCWGC 4 cut(s) 30, 59, 146, 584
ApoI RAATTY 3 cut(s) 830, 1144, 2174
ArsI GACNNNNNNTTYG 2 cut(s) 1523, 1555
AseI ATTAAT 2 cut(s) 654, 2400
AspLEI GCGC 1 cut(s) 2104
AspS9I GGNCC 7 cut(s) 4, 316, 340, 502, 529, 1222, 2217
AsuC2I CCSGG 3 cut(s) 500, 910, 911
AsuHPI GGTGA 6 cut(s) 245, 400, 488, 628, 1033, 1687
AsuII TTCGAA 1 cut(s) 1985
AvaI CYCGRG 1 cut(s) 909
AvaII GGWCC 2 cut(s) 340, 502
BaeGI GKGCMC 2 cut(s) 846, 2140
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 14, 2140
BbvI GCAGC 4 cut(s) 17, 71, 158, 596
BccI CCATC 9 cut(s) 287, 988, 1132, 1184, 1342, 1352, 1447, 1468, 1787
BceAI ACGGC 3 cut(s) 18, 330, 1815
BciT130I CCWGG 1 cut(s) 344
BciVI GTATCC 1 cut(s) 2140
BclI TGATCA 1 cut(s) 1605
BcnI CCSGG 3 cut(s) 500, 910, 911
BfaI CTAG 5 cut(s) 299, 699, 1529, 1772, 1784
BfmI CTRYAG 3 cut(s) 804, 1513, 2456
BfoI RGCGCY 1 cut(s) 2105
BfrI CTTAAG 2 cut(s) 1226, 1961
BfuAI ACCTGC 3 cut(s) 647, 1009, 1666
BfuI GTATCC 1 cut(s) 2140
BisI GCNGC 5 cut(s) 31, 60, 147, 459, 585
BlsI GCNGC 5 cut(s) 32, 61, 148, 460, 586
Bme1390I CCNGG 4 cut(s) 344, 500, 910, 911
Bme18I GGWCC 2 cut(s) 340, 502
BmeT110I CYCGRG 1 cut(s) 909
BmgT120I GGNCC 7 cut(s) 4, 316, 340, 502, 529, 1222, 2217
BmiI GGNNCC 5 cut(s) 341, 504, 1600, 2219, 2287
BmrFI CCNGG 4 cut(s) 344, 500, 910, 911
BmsI GCATC 7 cut(s) 790, 827, 1146, 1233, 1604, 1993, 2326
Bpu10I CCTNAGC 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 1985
BpuEI CTTGAG 1 cut(s) 141
BpuMI CCSGG 3 cut(s) 500, 910, 911
Bsa29I ATCGAT 2 cut(s) 474, 1744
BsaAI YACGTR 1 cut(s) 1173
BsaBI GATNNNNATC 1 cut(s) 1478
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 3 cut(s) 141, 312, 909
BsaWI WCCGGW 2 cut(s) 17, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 1231, 2227
Bse1I ACTGG 4 cut(s) 881, 1329, 1726, 2155
Bse3DI GCAATG 2 cut(s) 1020, 2346
Bse8I GATNNNNATC 1 cut(s) 1478
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 2 cut(s) 474, 1744
BseDI CCNNGG 3 cut(s) 141, 312, 909
BseGI GGATG 6 cut(s) 805, 828, 1327, 1619, 1663, 2341
BseJI GATNNNNATC 1 cut(s) 1478
BseLI CCNNNNNNNGG 2 cut(s) 1231, 2227
BseMI GCAATG 2 cut(s) 1020, 2346
BseMII CTCAG 2 cut(s) 182, 1112
BseNI ACTGG 4 cut(s) 881, 1329, 1726, 2155
BseSI GKGCMC 2 cut(s) 846, 2140
BseXI GCAGC 4 cut(s) 17, 71, 158, 596
BseYI CCCAGC 1 cut(s) 1685
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 8 cut(s) 5, 317, 530, 1223, 1634, 1719, 2218, 2252
BshVI ATCGAT 2 cut(s) 474, 1744
BsiEI CGRYCG 1 cut(s) 466
BsiHKAI GWGCWC 2 cut(s) 14, 2140
BsiHKCI CYCGRG 1 cut(s) 909
BsiSI CCGG 5 cut(s) 18, 334, 500, 910, 1055
BslFI GGGAC 1 cut(s) 1772
BslI CCNNNNNNNGG 2 cut(s) 1231, 2227
BsmFI GGGAC 1 cut(s) 1772
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 8 cut(s) 5, 317, 530, 1223, 1634, 1719, 2218, 2252
BsoBI CYCGRG 1 cut(s) 909
Bsp119I TTCGAA 1 cut(s) 1985
Bsp1286I GDGCHC 3 cut(s) 14, 846, 2140
Bsp143I GATC 9 cut(s) 20, 346, 463, 471, 475, 1023, 1605, 1741, 1745
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 3 cut(s) 459, 484, 1567
BspANI GGCC 8 cut(s) 5, 317, 530, 1223, 1634, 1719, 2218, 2252
BspCNI CTCAG 2 cut(s) 181, 1113
BspDI ATCGAT 2 cut(s) 474, 1744
BspLI GGNNCC 5 cut(s) 341, 504, 1600, 2219, 2287
BspMAI CTGCAG 1 cut(s) 1517
BspMI ACCTGC 3 cut(s) 647, 1009, 1666
BspPI GGATC 2 cut(s) 28, 354
BspT104I TTCGAA 1 cut(s) 1985
BspTI CTTAAG 2 cut(s) 1226, 1961
BsrDI GCAATG 2 cut(s) 1020, 2346
BsrI ACTGG 4 cut(s) 881, 1329, 1726, 2155
BssECI CCNNGG 3 cut(s) 141, 312, 909
BssMI GATC 9 cut(s) 20, 346, 463, 471, 475, 1023, 1605, 1741, 1745
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 511, 1046
Bst6I CTCTTC 3 cut(s) 329, 410, 1503
BstACI GRCGYC 1 cut(s) 429
BstAFI CTTAAG 2 cut(s) 1226, 1961
BstBAI YACGTR 1 cut(s) 1173
BstBI TTCGAA 1 cut(s) 1985
BstC8I GCNNGC 2 cut(s) 717, 842
BstDEI CTNAG 4 cut(s) 8, 168, 1121, 1563
BstDSI CCRYGG 2 cut(s) 141, 312
BstF5I GGATG 6 cut(s) 805, 828, 1327, 1619, 1663, 2341
BstH2I RGCGCY 1 cut(s) 2105
BstHHI GCGC 1 cut(s) 2104
BstKTI GATC 9 cut(s) 23, 349, 466, 474, 478, 1026, 1608, 1744, 1748
BstMBI GATC 9 cut(s) 20, 346, 463, 471, 475, 1023, 1605, 1741, 1745
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 2 cut(s) 68, 631
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 719, 1911
BstSCI CCNGG 4 cut(s) 342, 498, 908, 909
BstSFI CTRYAG 3 cut(s) 804, 1513, 2456
BstSLI GKGCMC 2 cut(s) 846, 2140
BstV1I GCAGC 4 cut(s) 17, 71, 158, 596
Bsu15I ATCGAT 2 cut(s) 474, 1744
BsuI GTATCC 1 cut(s) 2140
BsuRI GGCC 8 cut(s) 5, 317, 530, 1223, 1634, 1719, 2218, 2252
BsuTUI ATCGAT 2 cut(s) 474, 1744
BtgI CCRYGG 2 cut(s) 141, 312
BtgZI GCGATG 2 cut(s) 439, 663
BtsCI GGATG 6 cut(s) 805, 828, 1327, 1619, 1663, 2341
BtsI GCAGTG 3 cut(s) 1216, 1522, 2121
BtsIMutI CAGTG 4 cut(s) 1216, 1336, 1522, 2121
BveI ACCTGC 3 cut(s) 647, 1009, 1666
Cac8I GCNNGC 2 cut(s) 717, 842
CfoI GCGC 1 cut(s) 2104
Cfr13I GGNCC 7 cut(s) 4, 316, 340, 502, 529, 1222, 2217
Cfr9I CCCGGG 1 cut(s) 909
ClaI ATCGAT 2 cut(s) 474, 1744
CseI GACGC 2 cut(s) 161, 437
Csp6I GTAC 4 cut(s) 670, 1069, 1458, 1554
CviAII CATG 7 cut(s) 142, 716, 928, 1820, 1908, 1977, 2374
CviQI GTAC 4 cut(s) 670, 1069, 1458, 1554
DdeI CTNAG 4 cut(s) 8, 168, 1121, 1563
DpnI GATC 9 cut(s) 22, 348, 465, 473, 477, 1025, 1607, 1743, 1747
DpnII GATC 9 cut(s) 20, 346, 463, 471, 475, 1023, 1605, 1741, 1745
DraI TTTAAA 1 cut(s) 1438
EaeI YGGCCR 1 cut(s) 2250
Eam1104I CTCTTC 3 cut(s) 329, 410, 1503
EarI CTCTTC 3 cut(s) 329, 410, 1503
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 1719
Eco24I GRGCYC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 2028
Eco47I GGWCC 2 cut(s) 340, 502
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 605, 2244
Eco88I CYCGRG 1 cut(s) 909
EcoICRI GAGCTC 1 cut(s) 12
EcoO109I RGGNCCY 2 cut(s) 529, 1222
EcoRI GAATTC 1 cut(s) 830
EcoRII CCWGG 1 cut(s) 342
EcoRV GATATC 1 cut(s) 2028
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 7 cut(s) 145, 719, 931, 1823, 1911, 1980, 2377
FaqI GGGAC 1 cut(s) 1772
FatI CATG 7 cut(s) 141, 715, 927, 1819, 1907, 1976, 2373
FauI CCCGC 1 cut(s) 1560
FauNDI CATATG 1 cut(s) 556
FbaI TGATCA 1 cut(s) 1605
Fnu4HI GCNGC 5 cut(s) 31, 60, 147, 459, 585
FokI GGATG 6 cut(s) 812, 835, 1334, 1626, 1670, 2348
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 5 cut(s) 31, 60, 147, 459, 585
FspBI CTAG 5 cut(s) 299, 699, 1529, 1772, 1784
GlaI GCGC 1 cut(s) 2103
GluI GCNGC 5 cut(s) 31, 60, 147, 459, 585
GsaI CCCAGC 1 cut(s) 1689
HaeII RGCGCY 1 cut(s) 2105
HaeIII GGCC 8 cut(s) 5, 317, 530, 1223, 1634, 1719, 2218, 2252
HapII CCGG 5 cut(s) 18, 334, 500, 910, 1055
HgaI GACGC 2 cut(s) 161, 437
HhaI GCGC 1 cut(s) 2104
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 7 cut(s) 145, 719, 931, 1823, 1911, 1980, 2377
Hin6I GCGC 1 cut(s) 2102
HinP1I GCGC 1 cut(s) 2102
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HindIII AAGCTT 2 cut(s) 1649, 1964
HinfI GANTC 8 cut(s) 44, 563, 934, 1214, 1883, 2255, 2273, 2357
HpaII CCGG 5 cut(s) 18, 334, 500, 910, 1055
HphI GGTGA 6 cut(s) 245, 400, 488, 628, 1033, 1687
Hpy166II GTNNAC 4 cut(s) 55, 176, 2138, 2395
Hpy188I TCNGA 8 cut(s) 427, 651, 836, 951, 1122, 1219, 2080, 2296
Hpy188III TCNNGA 8 cut(s) 202, 536, 699, 1078, 1370, 1580, 1731, 1772
Hpy8I GTNNAC 4 cut(s) 55, 176, 2138, 2395
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 6 cut(s) 520, 542, 1000, 1304, 2039, 2043
HpyCH4III ACNGT 2 cut(s) 511, 1046
HpyCH4IV ACGT 3 cut(s) 1067, 1172, 2378
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 631
HpyF3I CTNAG 4 cut(s) 8, 168, 1121, 1563
HpySE526I ACGT 3 cut(s) 1067, 1172, 2378
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 7 cut(s) 145, 719, 931, 1823, 1911, 1980, 2377
HspAI GCGC 1 cut(s) 2102
Ksp22I TGATCA 1 cut(s) 1605
Kzo9I GATC 9 cut(s) 20, 346, 463, 471, 475, 1023, 1605, 1741, 1745
LmnI GCTCC 6 cut(s) 17, 154, 784, 1206, 1372, 2285
Lsp1109I GCAGC 4 cut(s) 17, 71, 158, 596
LweI GCATC 7 cut(s) 790, 827, 1146, 1233, 1604, 1993, 2326
MaeI CTAG 5 cut(s) 299, 699, 1529, 1772, 1784
MaeII ACGT 3 cut(s) 1067, 1172, 2378
MaeIII GTNAC 7 cut(s) 1168, 1273, 1378, 1693, 1823, 2008, 2205
MalI GATC 9 cut(s) 22, 348, 465, 473, 477, 1025, 1607, 1743, 1747
MboI GATC 9 cut(s) 20, 346, 463, 471, 475, 1023, 1605, 1741, 1745
MhlI GDGCHC 3 cut(s) 14, 846, 2140
MmeI TCCRAC 3 cut(s) 176, 450, 903
MspCI CTTAAG 2 cut(s) 1226, 1961
MspI CCGG 5 cut(s) 18, 334, 500, 910, 1055
MspR9I CCNGG 4 cut(s) 344, 500, 910, 911
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 68, 631
NciI CCSGG 3 cut(s) 500, 910, 911
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 556
NdeII GATC 9 cut(s) 20, 346, 463, 471, 475, 1023, 1605, 1741, 1745
NlaIII CATG 7 cut(s) 145, 719, 931, 1823, 1911, 1980, 2377
NlaIV GGNNCC 5 cut(s) 341, 504, 1600, 2219, 2287
NmuCI GTSAC 3 cut(s) 1168, 1378, 1693
NspI RCATGY 2 cut(s) 719, 1911
NspV TTCGAA 1 cut(s) 1985
PaeI GCATGC 1 cut(s) 719
PaqCI CACCTGC 2 cut(s) 647, 1009
PceI AGGCCT 1 cut(s) 1719
PciI ACATGT 1 cut(s) 1907
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 8 cut(s) 44, 563, 934, 1214, 1883, 2255, 2273, 2357
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 5 cut(s) 32, 61, 148, 460, 586
Ple19I CGATCG 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 1173
PscI ACATGT 1 cut(s) 1907
PshBI ATTAAT 2 cut(s) 654, 2400
PsiI TTATAA 1 cut(s) 1386
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 1685
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 5 cut(s) 341, 504, 1600, 2219, 2287
PspPI GGNCC 7 cut(s) 4, 316, 340, 502, 529, 1222, 2217
PstI CTGCAG 1 cut(s) 1517
PvuI CGATCG 1 cut(s) 466
RsaI GTAC 4 cut(s) 671, 1070, 1459, 1555
RsaNI GTAC 4 cut(s) 670, 1069, 1458, 1554
SacI GAGCTC 1 cut(s) 14
SatI GCNGC 5 cut(s) 31, 60, 147, 459, 585
Sau3AI GATC 9 cut(s) 20, 346, 463, 471, 475, 1023, 1605, 1741, 1745
Sau96I GGNCC 7 cut(s) 4, 316, 340, 502, 529, 1222, 2217
ScrFI CCNGG 4 cut(s) 344, 500, 910, 911
SduI GDGCHC 3 cut(s) 14, 846, 2140
SfaNI GCATC 7 cut(s) 790, 827, 1146, 1233, 1604, 1993, 2326
SfcI CTRYAG 3 cut(s) 804, 1513, 2456
SfuI TTCGAA 1 cut(s) 1985
SinI GGWCC 2 cut(s) 340, 502
SmaI CCCGGG 1 cut(s) 911
SmlI CTYRAG 3 cut(s) 156, 1226, 1961
SmoI CTYRAG 3 cut(s) 156, 1226, 1961
SphI GCATGC 1 cut(s) 719
SseBI AGGCCT 1 cut(s) 1719
SsiI CCGC 3 cut(s) 459, 484, 1567
SspI AATATT 1 cut(s) 1915
SspMI CTAG 5 cut(s) 299, 699, 1529, 1772, 1784
SstI GAGCTC 1 cut(s) 14
StuI AGGCCT 1 cut(s) 1719
StyD4I CCNGG 4 cut(s) 342, 498, 908, 909
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 511, 1046
TaiI ACGT 3 cut(s) 1070, 1175, 2381
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 8 cut(s) 44, 563, 934, 1214, 1883, 2255, 2273, 2357
TscAI CASTG 4 cut(s) 1216, 1336, 1522, 2128
TseFI GTSAC 3 cut(s) 1168, 1378, 1693
TseI GCWGC 4 cut(s) 30, 59, 146, 584
Tsp45I GTSAC 3 cut(s) 1168, 1378, 1693
TspDTI ATGAA 8 cut(s) 442, 620, 944, 1338, 1460, 1679, 1808, 2423
TspGWI ACGGA 1 cut(s) 2159
TspMI CCCGGG 1 cut(s) 909
TspRI CASTG 4 cut(s) 1216, 1336, 1522, 2128
Vha464I CTTAAG 2 cut(s) 1226, 1961
VneI GTGCAC 1 cut(s) 2136
VpaK11BI GGWCC 2 cut(s) 340, 502
VspI ATTAAT 2 cut(s) 654, 2400
XapI RAATTY 3 cut(s) 830, 1144, 2174
XbaI TCTAGA 2 cut(s) 698, 1771
XceI RCATGY 2 cut(s) 719, 1911
XmaI CCCGGG 1 cut(s) 909
XspI CTAG 5 cut(s) 299, 699, 1529, 1772, 1784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.