Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005782

Physical Location & Seq

Genomic Coordinates Forward (+)

14924982 .. 14931629

Gene Structure 6648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3675 bp

ATGATGATAAATCGGGGGCTGTTCGGGTGGTCCCCGCCCCACATACAGCCCTTGACGCCGGTCTCAGAGGTGTCGGAGCCGCCAGAGTCGCCTTCGCCGTATATGGAGCAGAGTATCGACGCGTCGGCTCAGCCGATGGAGCTGGAGGAGGAGATGGAGGAGCAGGAGGAGATGGAGCCGCCGCCAGCTGCCGTGCCCTTCTCGAGGCTGTTCACCTGCGCTGACCGGCTCGATTGGGTTCTGATGACTGTTGGGTCGCTCGCCGCGGCGGCTCACGGGACGGCTCTGGTGGTGTACTTGCACTACTTCGGTAAGATTATTCATGTACTCTGGGTCAAGCGTGACCACAAGGGCGAGCCGCCGCAAATGAACGAGGAGCAGTTCCAGAAGTTTATGGATCTTTCTTTGTCCATCGTTTATATTGCCGCTGGTGTTTTTGCTGCTGGTTGGATTGAGGTCTCATGCTGGATTCTGACAGGAGAACGCCAGACTGCTGTCATCAGGTCAAAATATGTTCAAGTATTACTTAACCAGGATATGAGTTTTTTTGATACCTATGGGAACAACGGGGACATTGTGAGCCAAGTATTGAGTGATGTGTTGCTCATTCAGTCTGCTCTTAGTGAAAAAGTTGGAAATTATATTCATAACATGGCTACATTTTTCAGTGGTCTCATTATTGGATTCATCAACTGTTGGCAGATTGCGGCTATAACATTAGCCACTGGTCCTTTTATTGTGGCTGCTGGAGGAATATCAAATATATTTCTTCATAGGCTTGCTGAGAATATTCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTATCTCACATTAGGACGTTATATGCATTTACAAATGAAACATTGGCCAAGTATTCGTATGCTACATCACTGCAAGCAACTCTAAGATATGGCATATTGATAAGTCTTGTGCAAGGACTTGGACTTGGATTCACTTATGGCCTTGCCATTTGTTCTTGTGCCCTGCAACTGTGGGTTGGAAGGTTCCTGGTTACTAGTCGTGAAGCTCATGGTGGTGAAATTATAACAGCCCTTTTTGCTGTAATATTAAGTGGCCTTGGGCTGAATCAAGCGGCAACAAACTTCTACTCATTTGACCAAGGTCGAATTGCTGCTTATAGACTTTTTGAGATGATAAGTCGATCATCCTCTACTGTTAATCACGAGGGAAGTGCCCTAGTGACTGTACAAGGAAATATTGAGTTTCGAAATGTATATTTCAGTTATCTATCTCGTCCTGAGATCCCCATATTGAGTGGTTTTTACCTCACTGTACCTGCTAAGAAAGCTGTAGCACTCGTTGGCAGAAATGGTTCAGGAAAGAGCAGTATTATCCCCCTCATGGAGCGGTTTTATCGATCCAACTTTAGCTGTAGAGAAGTTCTTTTGGATGGAGAAAATATCAAAAACCTGAGACTGGAGTGGCTAAGAAGTCAGATAGGGCTAGTCACACAGGAGCCTGCTTTGCTGAGTTTAAGTATAAGAGACAATATTGCTTATGGGCGGGATGCTACAATGGACCAAATTCAAGAAGCTGCTAAAATAGCGCATGCGCATACATTTATTACCTCACTTGAGGGAGGATATGATACACAGGTGGGAAGAGCAGGCTTAGCATTGACGGAAGAGCAAAAAATAAAACTTTCAATTGCCAGAGCAGTACTTCTGAACCCCTCAATTCTTTTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAAGCTGAAAAAGCCGTTCAAGAAGCTCTAGATGTCCTTATGTTGGGGCGTTCAACTATAATTATAGCTCGGCGGCTTAGTCTTATAAGGAATGCTGATTACATAGCTGTGATGGAGGAAGGCCAACTAGTTGAAATGGGTACCCATGATGAGTTATTAAACCTGGATGGCCTCTATTCGGAGCTTCTCAAAAATGAAGAAGCTGCAAAACTTCCTAGGAGGATGCCAGTGAGCTACAAGGAAACTGCCACTTTCCAAATTGAAAAGGATTCTTCGGCAAGTAATAGCTTCCAAGAACCATCATCTCCGAAAATGATGAAATCACCCTCCCTTCAGAGAACTACTGGCATCTTCCGGATGGGTGATAACACTTTTAACTCACAGGAGTCACCAAAAGCTAATAGCCCACCAGCAGAAGTGTTGGAAAATGGTCAGGCCTTGGATTCAGAAGATAAGGAACCATCAATAAAAAGGCAGGATAGTTTTGAAATGAGACTACCAGAGTTACCCAAGATTGATGTCCAATCTGCTAATCACCAAACGTCAAATGGTTCGGACCCTGAATCCCCCGTTTCACCCCTTCTGACATCTGACCCGAAAAATGAGCGGTCCCATTCACAAGCCTTTAGCCGCCCCCATAGTCATTCAGATGACTTTCCCATGAAAGCGAATCAAGCAAAATGTAGAAATTATAAGAAGGCACCATCATTTTGGAGGCTTGCACAACTTAGTTTTGCTGAATGGCTGTATGCTGTGTTAGGAAGCATTGGTGCTGCTATCTTTGGTTCTTTCAATCCGCTTCTTGCTTATGTAATCGCACTGATAGTAACAGCATACTACAGAGTTGATGAAGGTCGTCACTTGAGACAGGAAGTAGACAAATGGTGCTTGATCATTGCTTGTATGGGTATAGTGACTGTCGTTGCCAATTTCTTGCAGCATTTCTACTTTGGTATAATGGGTGAGAAAATGACTGAACGAGTTCGTAGAATGATGTTTTCAGCAATGCTACGAAATGAAGCAGGATGGTTTGATGAAGAGGAAAACAGTGCTGATACCTTATCCATGCGCTTGGCCAATGATGCCACATTTGTACGAGCTGCTTTCAGCAATCGGCTGTCAATATTTATACAGGATAGTGCTGCTGTTGTTGTTGCTCTTCTTATTGGGGTGCTGCTACAATGGCGATTAGCACTTGTGGCTTTGGCAACCCTACCAGTTCTCACTATTTCTGCCACCGCACAGAAATTATGGCTTGCTGGTTTTTCAAGGGGAATTCAGGAGATGCACAGGAAGGCATCTTTGGTTCTCGAGGATGCAGTTAGAAACATTTACACTGTTGTAGCATTCTGTGCTGGTAATAAGGTAATGGAGCTCTACAGGTTGCAACTAAAGAAAATATTCAAGCAGAGTTTCTTTCATGGAATGGCCATTGGCTTTGCATTTGGCTTTTCACAGTTCCTTCTTTTTGCCTGCAATGCCCTTCTCCTCTGGTACACTGCACGCTCTGTGAAAAAGAAGCATATGGATCGATCTACTGCTCTCAAGGAGTATATGGTTTTCTCTTTTGCTACATTTGCACTTGTAGAGCCTTTTGGGTTGGCTCCTTACATCCTGAAGCGCCGAAAATCTCTCATTTCAGTTTTTGAAATCATAGATCGAGTGCCGAAGATTGAGCCAGATGAAAACTCAGCGATGAAACCACCTAATGTTTATGGAAGCCTTGAGTTGAAAAATGTTGACTTCTGTTATCCAACTCGCCCAGAACTGTTGGTACTGAGCAATTTCAGTCTCAAAGTAAATGGGGGGCAAACTGTAGCTGTGGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATAATTTCTTTGATTGAGAGATTTTATGATCCAGTTGCTGGTCAAGTCTTACTGGATAGTCGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1225

Amino Acids

135.96

Weight (kDa)

5.97

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	86 - 361	5.2e-43	ABC transporter transmembrane region
ABC_tran	PF00005	431 - 578	1.8e-18	ABC transporter
ABC_membrane	PF00664	839 - 1102	6.3e-39	ABC transporter transmembrane region
ABC_tran	PF00005	1176 - 1223	2.2e-09	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39480 AT2G39480 AT3G55320
fragaria_vesca	FvH4_7g21390 FvH4_7g21390 FvH4_7g21390 FvH4_7g21390 FvH4_7g21390 FvH4_7g21390 FvH4_7g21390
malus_domestica	MD01G1121400.v1.1 MD07G1191100.v1.1
prunus_persica	Prupe.2G229100_v2.0.a1 Prupe.2G229100_v2.0.a1
pyrus_communis	pycom01g14840 pycom07g18040
rosa_chinensis	RchiOBHm_Chr1g0365761
rosa_laevigata	RLG00000027402
rosa_multiflora	Rmu_sc0002093.1_g000033 Rmu_sc0004311.1_g000018
rosa_roxburghii	Rroxscaffold_4G00290920
rosa_rugosa	Rorug01G0323900 Rorug01G0324000 Rorug01G0324000
rosa_samantha	Rh1AG332700 Rh1BG293600 Rh1CG310500
rosa_wichuraiana	Rw1G029540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1058, 1835, 2442
AarI	CACCTGC	1 cut(s)	224
AasI	GACNNNNNNGTC	1 cut(s)	253
Acc16I	TGCGCA	1 cut(s)	1587
Acc36I	ACCTGC	2 cut(s)	224, 1318
Acc65I	GGTACC	1 cut(s)	1889
AccB1I	GGYRCC	2 cut(s)	1889, 2449
AccB7I	CCANNNNNTGG	1 cut(s)	3641
AccBSI	CCGCTC	2 cut(s)	1381, 2356
AccI	GTMKAC	1 cut(s)	2625
AccII	CGCG	2 cut(s)	122, 266
AccIII	TCCGGA	1 cut(s)	2103
AclWI	GGATC	5 cut(s)	405, 1270, 1386, 3285, 3626
AcoI	YGGCCR	3 cut(s)	879, 2823, 3177
AcsI	RAATTY	2 cut(s)	1557, 3024
AcuI	CTGAAG	3 cut(s)	828, 2066, 3386
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	9 cut(s)	296, 327, 1221, 1308, 1695, 1891, 2844, 3245, 3525
AfiI	CCNNNNNNNGG	6 cut(s)	204, 1375, 1450, 1792, 1927, 3641
AflIII	ACRYGT	1 cut(s)	120
AhlI	ACTAGT	2 cut(s)	1028, 1876
AjnI	CCWGG	3 cut(s)	531, 1020, 1911
AjuI	GAANNNNNNNTTGG	2 cut(s)	3035, 3067
Alw21I	GWGCWC	2 cut(s)	3126, 3602
Alw26I	GTCTC	8 cut(s)	67, 463, 677, 1441, 1512, 2236, 2608, 3545
AlwI	GGATC	5 cut(s)	405, 1270, 1386, 3285, 3626
AlwNI	CAGNNNCTG	1 cut(s)	3641
Ama87I	CYCGRG	2 cut(s)	202, 3059
Aor13HI	TCCGGA	1 cut(s)	2103
AoxI	GGCC	8 cut(s)	879, 973, 1087, 1870, 1918, 2184, 2823, 3177
ApoI	RAATTY	2 cut(s)	1557, 3024
Asp700I	GAANNNNTTC	3 cut(s)	1345, 2730, 3149
Asp718I	GGTACC	1 cut(s)	1889
AspA2I	CCTAGG	1 cut(s)	1964
AspLEI	GCGC	5 cut(s)	221, 1582, 1588, 2820, 3372
AspS9I	GGNCC	5 cut(s)	30, 728, 1552, 2305, 2358
AsuHPI	GGTGA	8 cut(s)	205, 1061, 2064, 2123, 2130, 2276, 2316, 2723
AsuII	TTCGAA	1 cut(s)	1240
AsuNHI	GCTAGC	1 cut(s)	815
AvaI	CYCGRG	2 cut(s)	202, 3059
AvaII	GGWCC	5 cut(s)	30, 728, 1552, 2305, 2358
AvrII	CCTAGG	1 cut(s)	1964
BaeGI	GKGCMC	3 cut(s)	198, 997, 1210
BaeI	ACNNNNGTAYC	2 cut(s)	1614, 1647
BalI	TGGCCA	3 cut(s)	881, 2825, 3179
BanI	GGYRCC	2 cut(s)	1889, 2449
BanII	GRGCYC	1 cut(s)	3126
BauI	CACGAG	1 cut(s)	1196
Bbv12I	GWGCWC	2 cut(s)	3126, 3602
BceAI	ACGGC	4 cut(s)	82, 176, 297, 1748
BcgI	CGANNNNNNTGC	4 cut(s)	1187, 1221, 3260, 3294
BciT130I	CCWGG	3 cut(s)	533, 1022, 1913
BclI	TGATCA	1 cut(s)	2640
BcoDI	GTCTC	8 cut(s)	67, 463, 677, 1441, 1512, 2236, 2608, 3545
BcuI	ACTAGT	2 cut(s)	1028, 1876
BfaI	CTAG	7 cut(s)	816, 1029, 1211, 1478, 1778, 1877, 1965
BfmI	CTRYAG	5 cut(s)	1323, 1405, 2587, 3127, 3564
BfoI	RGCGCY	1 cut(s)	3373
BfuAI	ACCTGC	2 cut(s)	224, 1318
BglI	GCCNNNNNGGC	1 cut(s)	269
BlnI	CCTAGG	1 cut(s)	1964
BlpI	GCTNAGC	2 cut(s)	129, 1645
BmcAI	AGTACT	1 cut(s)	1695
Bme1390I	CCNGG	3 cut(s)	533, 1022, 1913
Bme18I	GGWCC	5 cut(s)	30, 728, 1552, 2305, 2358
BmeT110I	CYCGRG	2 cut(s)	202, 3059
BmgT120I	GGNCC	5 cut(s)	30, 728, 1552, 2305, 2358
BmrFI	CCNGG	3 cut(s)	533, 1022, 1913
BmsI	GCATC	8 cut(s)	787, 1531, 1962, 2106, 2821, 3024, 3055, 3056
BmtI	GCTAGC	1 cut(s)	819
BoxI	GACNNNNGTC	3 cut(s)	59, 494, 1134
BpmI	CTGGAG	3 cut(s)	164, 768, 1472
Bpu1102I	GCTNAGC	2 cut(s)	129, 1645
Bpu14I	TTCGAA	1 cut(s)	1240
BpuEI	CTTGAG	4 cut(s)	1628, 2632, 3278, 3494
Bsa29I	ATCGAT	3 cut(s)	1390, 3280, 3668
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	3 cut(s)	67, 463, 677
BsaJI	CCNNGG	5 cut(s)	264, 1090, 1132, 1964, 2187
BsaWI	WCCGGW	1 cut(s)	2103
Bsc4I	CCNNNNNNNGG	6 cut(s)	204, 1375, 1450, 1792, 1927, 3641
Bse118I	RCCGGY	2 cut(s)	58, 225
Bse1I	ACTGG	8 cut(s)	730, 1455, 1738, 1976, 2098, 2966, 3635, 3660
Bse3DI	GCAATG	4 cut(s)	819, 2643, 2760, 3232
BseAI	TCCGGA	1 cut(s)	2103
BseBI	CCWGG	3 cut(s)	533, 1022, 1913
BseCI	ATCGAT	3 cut(s)	1390, 3280, 3668
BseDI	CCNNGG	5 cut(s)	264, 1090, 1132, 1964, 2187
BseGI	GGATG	9 cut(s)	1178, 1429, 1546, 1921, 1977, 2112, 2780, 3070, 3360
BseLI	CCNNNNNNNGG	6 cut(s)	204, 1375, 1450, 1792, 1927, 3641
BseMI	GCAATG	4 cut(s)	819, 2643, 2760, 3232
BseMII	CTCAG	8 cut(s)	78, 143, 774, 1263, 1436, 1493, 3453, 3518
BseNI	ACTGG	8 cut(s)	730, 1455, 1738, 1976, 2098, 2966, 3635, 3660
BseRI	GAGGAG	6 cut(s)	161, 164, 173, 182, 389, 3227
BseSI	GKGCMC	3 cut(s)	198, 997, 1210
BsgI	GTGCAG	1 cut(s)	3234
Bsh1236I	CGCG	2 cut(s)	122, 266
Bsh1285I	CGRYCG	1 cut(s)	3668
BshFI	GGCC	8 cut(s)	881, 975, 1089, 1872, 1920, 2186, 2825, 3179
BshNI	GGYRCC	2 cut(s)	1889, 2449
BshVI	ATCGAT	3 cut(s)	1390, 3280, 3668
BsiEI	CGRYCG	1 cut(s)	3668
BsiHKAI	GWGCWC	2 cut(s)	3126, 3602
BsiHKCI	CYCGRG	2 cut(s)	202, 3059
BsiSI	CCGG	3 cut(s)	59, 226, 2104
BslFI	GGGAC	4 cut(s)	16, 292, 584, 2344
BslI	CCNNNNNNNGG	6 cut(s)	204, 1375, 1450, 1792, 1927, 3641
BsmAI	GTCTC	8 cut(s)	67, 463, 677, 1441, 1512, 2236, 2608, 3545
BsmFI	GGGAC	4 cut(s)	16, 292, 584, 2344
BsmI	GAATGC	2 cut(s)	1846, 3095
BsnI	GGCC	8 cut(s)	881, 975, 1089, 1872, 1920, 2186, 2825, 3179
Bso31I	GGTCTC	3 cut(s)	67, 463, 677
BsoBI	CYCGRG	2 cut(s)	202, 3059
Bsp119I	TTCGAA	1 cut(s)	1240
Bsp1286I	GDGCHC	5 cut(s)	198, 997, 1210, 3126, 3602
Bsp13I	TCCGGA	1 cut(s)	2103
Bsp1407I	TGTACA	1 cut(s)	1219
Bsp1720I	GCTNAGC	2 cut(s)	129, 1645
BspANI	GGCC	8 cut(s)	881, 975, 1089, 1872, 1920, 2186, 2825, 3179
BspCNI	CTCAG	8 cut(s)	77, 142, 775, 1264, 1437, 1494, 3452, 3519
BspDI	ATCGAT	3 cut(s)	1390, 3280, 3668
BspEI	TCCGGA	1 cut(s)	2103
BspFNI	CGCG	2 cut(s)	122, 266
BspMI	ACCTGC	2 cut(s)	224, 1318
BspOI	GCTAGC	1 cut(s)	819
BspPI	GGATC	5 cut(s)	405, 1270, 1386, 3285, 3626
BspQI	GCTCTTC	3 cut(s)	1630, 1653, 2913
BspT104I	TTCGAA	1 cut(s)	1240
BspT107I	GGYRCC	2 cut(s)	1889, 2449
BspTNI	GGTCTC	3 cut(s)	67, 463, 677
BsrBI	CCGCTC	2 cut(s)	1381, 2356
BsrDI	GCAATG	4 cut(s)	819, 2643, 2760, 3232
BsrFI	RCCGGY	2 cut(s)	58, 225
BsrGI	TGTACA	1 cut(s)	1219
BsrI	ACTGG	8 cut(s)	730, 1455, 1738, 1976, 2098, 2966, 3635, 3660
BssAI	RCCGGY	2 cut(s)	58, 225
BssECI	CCNNGG	5 cut(s)	264, 1090, 1132, 1964, 2187
BssNI	GRCGYC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	1196
BssT1I	CCWWGG	4 cut(s)	1090, 1132, 1964, 2187
Bst2BI	CACGAG	1 cut(s)	1196
Bst2UI	CCWGG	3 cut(s)	533, 1022, 1913
Bst6I	CTCTTC	4 cut(s)	1630, 1653, 2781, 2913
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	3101
BstAUI	TGTACA	1 cut(s)	1219
BstBI	TTCGAA	1 cut(s)	1240
BstDSI	CCRYGG	1 cut(s)	264
BstENI	CCTNNNNNAGG	1 cut(s)	202
BstF5I	GGATG	9 cut(s)	1178, 1429, 1546, 1921, 1977, 2112, 2780, 3070, 3360
BstFNI	CGCG	2 cut(s)	122, 266
BstH2I	RGCGCY	1 cut(s)	3373
BstHHI	GCGC	5 cut(s)	221, 1582, 1588, 2820, 3372
BstMAI	GTCTC	8 cut(s)	67, 463, 677, 1441, 1512, 2236, 2608, 3545
BstMCI	CGRYCG	1 cut(s)	3668
BstNI	CCWGG	3 cut(s)	533, 1022, 1913
BstNSI	RCATGY	1 cut(s)	1586
BstPAI	GACNNNNGTC	3 cut(s)	59, 494, 1134
BstSCI	CCNGG	3 cut(s)	531, 1020, 1911
BstSFI	CTRYAG	5 cut(s)	1323, 1405, 2587, 3127, 3564
BstSLI	GKGCMC	3 cut(s)	198, 997, 1210
BstUI	CGCG	2 cut(s)	122, 266
BstX2I	RGATCY	2 cut(s)	397, 1275
BstXI	CCANNNNNNTGG	2 cut(s)	2460, 2821
BstYI	RGATCY	2 cut(s)	397, 1275
Bsu15I	ATCGAT	3 cut(s)	1390, 3280, 3668
BsuRI	GGCC	8 cut(s)	881, 975, 1089, 1872, 1920, 2186, 2825, 3179
BsuTUI	ATCGAT	3 cut(s)	1390, 3280, 3668
BtgI	CCRYGG	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	3458
BtsCI	GGATG	9 cut(s)	1178, 1429, 1546, 1921, 1977, 2112, 2780, 3070, 3360
BtsI	GCAGTG	2 cut(s)	902, 3246
BtsIMutI	CAGTG	9 cut(s)	673, 723, 902, 1302, 1983, 2567, 2803, 3084, 3246
BveI	ACCTGC	2 cut(s)	224, 1318
CaiI	CAGNNNCTG	1 cut(s)	3641
CfoI	GCGC	5 cut(s)	221, 1582, 1588, 2820, 3372
Cfr10I	RCCGGY	2 cut(s)	58, 225
Cfr13I	GGNCC	5 cut(s)	30, 728, 1552, 2305, 2358
Cfr42I	CCGCGG	1 cut(s)	267
ClaI	ATCGAT	3 cut(s)	1390, 3280, 3668
CseI	GACGC	3 cut(s)	64, 111, 128
Csp6I	GTAC	9 cut(s)	295, 326, 1220, 1307, 1694, 1890, 2843, 3244, 3524
CviQI	GTAC	9 cut(s)	295, 326, 1220, 1307, 1694, 1890, 2843, 3244, 3524
DrdI	GACNNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	253
EaeI	YGGCCR	3 cut(s)	879, 2823, 3177
Eam1104I	CTCTTC	4 cut(s)	1630, 1653, 2781, 2913
EarI	CTCTTC	4 cut(s)	1630, 1653, 2781, 2913
Ecl136II	GAGCTC	1 cut(s)	3124
Eco130I	CCWWGG	4 cut(s)	1090, 1132, 1964, 2187
Eco147I	AGGCCT	1 cut(s)	2186
Eco24I	GRGCYC	1 cut(s)	3126
Eco31I	GGTCTC	3 cut(s)	67, 463, 677
Eco47I	GGWCC	5 cut(s)	30, 728, 1552, 2305, 2358
Eco53kI	GAGCTC	1 cut(s)	3124
Eco57I	CTGAAG	3 cut(s)	828, 2066, 3386
Eco88I	CYCGRG	2 cut(s)	202, 3059
EcoICRI	GAGCTC	1 cut(s)	3124
EcoNI	CCTNNNNNAGG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	3024
EcoRII	CCWGG	3 cut(s)	531, 1020, 1911
EcoT14I	CCWWGG	4 cut(s)	1090, 1132, 1964, 2187
EcoT22I	ATGCAT	2 cut(s)	802, 862
EcoT38I	GRGCYC	1 cut(s)	3126
ErhI	CCWWGG	4 cut(s)	1090, 1132, 1964, 2187
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	4 cut(s)	16, 292, 584, 2344
FauI	CCCGC	2 cut(s)	42, 1530
FauNDI	CATATG	2 cut(s)	802, 3273
FbaI	TGATCA	1 cut(s)	2640
FblI	GTMKAC	1 cut(s)	2625
FokI	GGATG	9 cut(s)	1165, 1436, 1553, 1928, 1984, 2119, 2787, 3077, 3347
FriOI	GRGCYC	1 cut(s)	3126
FspAI	RTGCGCAY	1 cut(s)	1587
FspBI	CTAG	7 cut(s)	816, 1029, 1211, 1478, 1778, 1877, 1965
FspI	TGCGCA	1 cut(s)	1587
GlaI	GCGC	5 cut(s)	220, 1581, 1587, 2819, 3371
GsuI	CTGGAG	3 cut(s)	164, 768, 1472
HaeII	RGCGCY	1 cut(s)	3373
HaeIII	GGCC	8 cut(s)	881, 975, 1089, 1872, 1920, 2186, 2825, 3179
HapII	CCGG	3 cut(s)	59, 226, 2104
HgaI	GACGC	3 cut(s)	64, 111, 128
HhaI	GCGC	5 cut(s)	221, 1582, 1588, 2820, 3372
Hin1I	GRCGYC	1 cut(s)	56
Hin6I	GCGC	5 cut(s)	219, 1580, 1586, 2818, 3370
HinP1I	GCGC	5 cut(s)	219, 1580, 1586, 2818, 3370
HincII	GTYRAC	1 cut(s)	3490
HindII	GTYRAC	1 cut(s)	3490
HpaII	CCGG	3 cut(s)	59, 226, 2104
HphI	GGTGA	8 cut(s)	205, 1061, 2064, 2123, 2130, 2276, 2316, 2723
Hpy166II	GTNNAC	6 cut(s)	213, 295, 1739, 2626, 3246, 3490
Hpy8I	GTNNAC	6 cut(s)	213, 295, 1739, 2626, 3246, 3490
Hpy99I	CGWCG	2 cut(s)	122, 127
HpyCH4IV	ACGT	2 cut(s)	851, 2291
HpySE526I	ACGT	2 cut(s)	851, 2291
Hsp92I	GRCGYC	1 cut(s)	56
HspAI	GCGC	5 cut(s)	219, 1580, 1586, 2818, 3370
Kpn2I	TCCGGA	1 cut(s)	2103
KpnI	GGTACC	1 cut(s)	1893
Ksp22I	TGATCA	1 cut(s)	2640
KspI	CCGCGG	1 cut(s)	267
LguI	GCTCTTC	3 cut(s)	1630, 1653, 2913
LweI	GCATC	8 cut(s)	787, 1531, 1962, 2106, 2821, 3024, 3055, 3056
MaeI	CTAG	7 cut(s)	816, 1029, 1211, 1478, 1778, 1877, 1965
MaeII	ACGT	2 cut(s)	851, 2291
MbiI	CCGCTC	2 cut(s)	1381, 2356
MfeI	CAATTG	1 cut(s)	1680
MflI	RGATCY	2 cut(s)	397, 1275
MhlI	GDGCHC	5 cut(s)	198, 997, 1210, 3126, 3602
MlsI	TGGCCA	3 cut(s)	881, 2825, 3179
MluI	ACGCGT	1 cut(s)	120
MluNI	TGGCCA	3 cut(s)	881, 2825, 3179
MlyI	GAGTC	2 cut(s)	95, 2144
MmeI	TCCRAC	7 cut(s)	54, 428, 613, 991, 1419, 2151, 3527
Mox20I	TGGCCA	3 cut(s)	881, 2825, 3179
Mph1103I	ATGCAT	2 cut(s)	802, 862
MroI	TCCGGA	1 cut(s)	2103
MroXI	GAANNNNTTC	3 cut(s)	1345, 2730, 3149
MscI	TGGCCA	3 cut(s)	881, 2825, 3179
MseI	TTAA	6 cut(s)	528, 1082, 1191, 1508, 1907, 2124
MslI	CAYNNNNRTG	3 cut(s)	1047, 1856, 2397
Msp20I	TGGCCA	3 cut(s)	881, 2825, 3179
MspA1I	CMGCKG	3 cut(s)	188, 266, 428
MspI	CCGG	3 cut(s)	59, 226, 2104
MspR9I	CCNGG	3 cut(s)	533, 1022, 1913
MunI	CAATTG	1 cut(s)	1680
Mva1269I	GAATGC	2 cut(s)	1846, 3095
MvaI	CCWGG	3 cut(s)	533, 1022, 1913
MvnI	CGCG	2 cut(s)	122, 266
NdeI	CATATG	2 cut(s)	802, 3273
NheI	GCTAGC	1 cut(s)	815
NmeAIII	GCCGAG	1 cut(s)	1798
NmuCI	GTSAC	6 cut(s)	341, 1213, 1480, 2136, 2606, 2662
NsbI	TGCGCA	1 cut(s)	1587
NsiI	ATGCAT	2 cut(s)	802, 862
NspI	RCATGY	1 cut(s)	1586
NspV	TTCGAA	1 cut(s)	1240
PaeI	GCATGC	1 cut(s)	1586
PaeR7I	CTCGAG	2 cut(s)	202, 3059
PaqCI	CACCTGC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	2186
PciSI	GCTCTTC	3 cut(s)	1630, 1653, 2913
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 131
PctI	GAATGC	2 cut(s)	1846, 3095
PdmI	GAANNNNTTC	3 cut(s)	1345, 2730, 3149
PfeI	GAWTC	8 cut(s)	469, 684, 963, 1099, 2018, 2192, 2312, 2419
PflMI	CCANNNNNTGG	1 cut(s)	3641
Ple19I	CGATCG	1 cut(s)	3668
PleI	GAGTC	2 cut(s)	94, 2143
PpsI	GAGTC	2 cut(s)	94, 2143
PshAI	GACNNNNGTC	3 cut(s)	59, 494, 1134
PsiI	TTATAA	3 cut(s)	1058, 1835, 2442
Psp124BI	GAGCTC	1 cut(s)	3126
Psp6I	CCWGG	3 cut(s)	531, 1020, 1911
PspGI	CCWGG	3 cut(s)	531, 1020, 1911
PspPI	GGNCC	5 cut(s)	30, 728, 1552, 2305, 2358
PsrI	GAACNNNNNNTAC	2 cut(s)	3507, 3539
PstNI	CAGNNNCTG	1 cut(s)	3641
PsuI	RGATCY	2 cut(s)	397, 1275
PvuI	CGATCG	1 cut(s)	3668
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	9 cut(s)	296, 327, 1221, 1308, 1695, 1891, 2844, 3245, 3525
RsaNI	GTAC	9 cut(s)	295, 326, 1220, 1307, 1694, 1890, 2843, 3244, 3524
RseI	CAYNNNNRTG	3 cut(s)	1047, 1856, 2397
SacI	GAGCTC	1 cut(s)	3126
SacII	CCGCGG	1 cut(s)	267
SapI	GCTCTTC	3 cut(s)	1630, 1653, 2913
SaqAI	TTAA	6 cut(s)	528, 1082, 1191, 1508, 1907, 2124
Sau96I	GGNCC	5 cut(s)	30, 728, 1552, 2305, 2358
ScaI	AGTACT	1 cut(s)	1695
SchI	GAGTC	2 cut(s)	95, 2144
ScrFI	CCNGG	3 cut(s)	533, 1022, 1913
SduI	GDGCHC	5 cut(s)	198, 997, 1210, 3126, 3602
SfaNI	GCATC	8 cut(s)	787, 1531, 1962, 2106, 2821, 3024, 3055, 3056
SfcI	CTRYAG	5 cut(s)	1323, 1405, 2587, 3127, 3564
Sfr274I	CTCGAG	2 cut(s)	202, 3059
Sfr303I	CCGCGG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	1240
SgrBI	CCGCGG	1 cut(s)	267
SinI	GGWCC	5 cut(s)	30, 728, 1552, 2305, 2358
SlaI	CTCGAG	2 cut(s)	202, 3059
SmiMI	CAYNNNNRTG	3 cut(s)	1047, 1856, 2397
SmlI	CTYRAG	6 cut(s)	202, 1607, 2611, 3059, 3293, 3473
SmoI	CTYRAG	6 cut(s)	202, 1607, 2611, 3059, 3293, 3473
SpeI	ACTAGT	2 cut(s)	1028, 1876
SphI	GCATGC	1 cut(s)	1586
SseBI	AGGCCT	1 cut(s)	2186
SspI	AATATT	6 cut(s)	790, 1080, 1231, 1525, 2874, 3150
SspMI	CTAG	7 cut(s)	816, 1029, 1211, 1478, 1778, 1877, 1965
SstI	GAGCTC	1 cut(s)	3126
StuI	AGGCCT	1 cut(s)	2186
StyD4I	CCNGG	3 cut(s)	531, 1020, 1911
StyI	CCWWGG	4 cut(s)	1090, 1132, 1964, 2187
TaiI	ACGT	2 cut(s)	854, 2294
TatI	WGTACW	4 cut(s)	294, 325, 1219, 1693
TfiI	GAWTC	8 cut(s)	469, 684, 963, 1099, 2018, 2192, 2312, 2419
Tru1I	TTAA	6 cut(s)	528, 1082, 1191, 1508, 1907, 2124
Tru9I	TTAA	6 cut(s)	528, 1082, 1191, 1508, 1907, 2124
TscAI	CASTG	9 cut(s)	673, 730, 909, 1309, 1983, 2574, 2803, 3091, 3253
TseFI	GTSAC	6 cut(s)	341, 1213, 1480, 2136, 2606, 2662
Tsp45I	GTSAC	6 cut(s)	341, 1213, 1480, 2136, 2606, 2662
TspGWI	ACGGA	1 cut(s)	1670
TspRI	CASTG	9 cut(s)	673, 730, 909, 1309, 1983, 2574, 2803, 3091, 3253
Van91I	CCANNNNNTGG	1 cut(s)	3641
VpaK11BI	GGWCC	5 cut(s)	30, 728, 1552, 2305, 2358
XagI	CCTNNNNNAGG	1 cut(s)	202
XapI	RAATTY	2 cut(s)	1557, 3024
XbaI	TCTAGA	1 cut(s)	1777
XceI	RCATGY	1 cut(s)	1586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2294
XhoI	CTCGAG	2 cut(s)	202, 3059
XmaJI	CCTAGG	1 cut(s)	1964
XmiI	GTMKAC	1 cut(s)	2625
XmnI	GAANNNNTTC	3 cut(s)	1345, 2730, 3149
XspI	CTAG	7 cut(s)	816, 1029, 1211, 1478, 1778, 1877, 1965
ZrmI	AGTACT	1 cut(s)	1695
Zsp2I	ATGCAT	2 cut(s)	802, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.