pycom01g18040

Belongs to the chalcone isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014035
Physical Location & Seq
Reverse (-)
17189101 .. 17190529
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGCAATCCCAGTTGTTTTTTCAGACAAATATTCCCATCTCCTCCCTTCTTCTCCACAGCTTCCTGCTAATCATACCCCCAAATCACAAAGCCAGTAAGATGGGCACTGAAGTTGTAATGGTGGATGAAGTCCCTTTTCCTCCTCAGATTACAACCACCAAGCCATTATCTCTGCTGGGTCAAGGAATTACCGACATTGAGATTCACTTTCTTCAAATCAAGTTCACAGCAATTGGGGTTTACTTGGACCCTGAAGTTGCTTCACACCTTCAACAGTGGAAGGCCAAAAAGGCAGATGAACTTGCAGAAGATGATGACTTTTTTGATGCTCTTATTTCTGCCCCTGTTGAGAAGTTCATTAGGGTTGTGGTGATCAAGGAGATCAAAGGGTCACAATATGGAGTGCAGCTTGAGAGTGCAGTGAGGGACAGATTGGCAGCTGATGACAAATACGAGGAAGAGGAGGAGGAGGCCTTGGAAAAAGTTGTTGAGTTCTTCCAATCAAAGTACTTCAAGAAGGATTCCGTCATCACATTCCATTTTCCTGCAACTTCTGCCGCGGCCGAGATTGTGTTTAGCACCGAAGGGAAGCAAGAGTCGAAACTCAAAGTGGAGAATGCAAATGTGGTGGAGAACATCAAGAAATGGTATTTGGGTGGGACAAGAGGGGTGTCTCCTTCGACCATCTCCTCCCTGGCCAACGTACTCTCAGCTGAACTGAGCAAGTGA

Protein Analysis

243

Amino Acids

27.02

Weight (kDa)

5.07

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chalcone PF02431 41 - 238 5.6e-33 Chalcone-flavanone isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05270 AT5G05270
fragaria_vesca FvH4_7g25890 FvH4_7g25890
malus_domestica MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica Prupe.2G263900_v2.0.a1
pyrus_communis pycom01g18040
rosa_laevigata RLG00000026916
rosa_multiflora Rmu_sc0001755.1_g000020
rosa_roxburghii Rroxscaffold_4G00285160
rosa_rugosa Rorug01G0370200
rosa_samantha Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana Rw1G033320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 560
AciI CCGC 2 cut(s) 558, 560
AcoI YGGCCR 2 cut(s) 561, 696
AcuI CTGAAG 2 cut(s) 129, 273
AfaI GTAC 2 cut(s) 509, 705
AgsI TTSAA 3 cut(s) 215, 272, 514
AjnI CCWGG 1 cut(s) 693
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 4 cut(s) 60, 409, 440, 713
AluI AGCT 4 cut(s) 60, 409, 440, 713
Alw26I GTCTC 1 cut(s) 678
AoxI GGCC 4 cut(s) 282, 471, 561, 696
ApeKI GCWGC 2 cut(s) 406, 437
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 698
BbvI GCAGC 2 cut(s) 418, 449
BccI CCATC 3 cut(s) 44, 94, 692
BciT130I CCWGG 1 cut(s) 695
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 678
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 4 cut(s) 407, 438, 558, 561
BlsI GCNGC 4 cut(s) 408, 439, 559, 562
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 1 cut(s) 695
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 695
BmrI ACTGGG 1 cut(s) 4
BmsI GCATC 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 4
BpuEI CTTGAG 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 474, 558, 693
Bse1I ACTGG 2 cut(s) 10, 93
BseBI CCWGG 1 cut(s) 695
BseDI CCNNGG 3 cut(s) 474, 558, 693
BseGI GGATG 1 cut(s) 130
BseMII CTCAG 3 cut(s) 158, 710, 723
BseNI ACTGG 2 cut(s) 10, 93
BseRI GAGGAG 6 cut(s) 31, 132, 476, 479, 482, 679
BseSI GKGCMC 1 cut(s) 107
BseX3I CGGCCG 1 cut(s) 561
BseXI GCAGC 2 cut(s) 418, 449
BseYI CCCAGC 1 cut(s) 175
BsgI GTGCAG 2 cut(s) 425, 438
Bsh1236I CGCG 1 cut(s) 560
Bsh1285I CGRYCG 1 cut(s) 564
BshFI GGCC 4 cut(s) 284, 473, 563, 698
BsiEI CGRYCG 1 cut(s) 564
BslFI GGGAC 3 cut(s) 116, 440, 673
BsmAI GTCTC 1 cut(s) 678
BsmFI GGGAC 3 cut(s) 116, 440, 673
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 4 cut(s) 284, 473, 563, 698
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 372, 381
BspACI CCGC 2 cut(s) 558, 560
BspANI GGCC 4 cut(s) 284, 473, 563, 698
BspCNI CTCAG 3 cut(s) 157, 711, 722
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 10, 93
BssECI CCNNGG 3 cut(s) 474, 558, 693
BssMI GATC 2 cut(s) 372, 381
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 453
BstAPI GCANNNNNTGC 1 cut(s) 554
BstDEI CTNAG 3 cut(s) 144, 709, 719
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 560
BstKTI GATC 2 cut(s) 375, 384
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 2 cut(s) 372, 381
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 2 cut(s) 290, 554
BstNI CCWGG 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 693
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 2 cut(s) 418, 449
BstXI CCANNNNNNTGG 1 cut(s) 100
BstZI CGGCCG 1 cut(s) 561
BsuRI GGCC 4 cut(s) 284, 473, 563, 698
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 105, 281, 426
Cfr13I GGNCC 1 cut(s) 247
Cfr42I CCGCGG 1 cut(s) 561
Csp6I GTAC 2 cut(s) 508, 704
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviQI GTAC 2 cut(s) 508, 704
DdeI CTNAG 3 cut(s) 144, 709, 719
DpnI GATC 2 cut(s) 374, 383
DpnII GATC 2 cut(s) 372, 381
EaeI YGGCCR 2 cut(s) 561, 696
EagI CGGCCG 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EclXI CGGCCG 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 474
Eco147I AGGCCT 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 247
Eco52I CGGCCG 1 cut(s) 561
Eco57I CTGAAG 2 cut(s) 129, 273
EcoRII CCWGG 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaiI YATR 2 cut(s) 74, 399
FaqI GGGAC 3 cut(s) 116, 440, 673
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 4 cut(s) 407, 438, 558, 561
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 407, 438, 558, 561
GluI GCNGC 4 cut(s) 407, 438, 558, 561
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 4 cut(s) 284, 473, 563, 698
HinfI GANTC 3 cut(s) 202, 521, 596
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 225, 241
Hpy188I TCNGA 2 cut(s) 24, 147
Hpy188III TCNNGA 2 cut(s) 514, 640
Hpy8I GTNNAC 2 cut(s) 225, 241
HpyAV CCTTC 6 cut(s) 56, 274, 278, 511, 578, 687
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 6 cut(s) 4, 305, 406, 419, 548, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 554
HpyF3I CTNAG 3 cut(s) 144, 709, 719
HpySE526I ACGT 1 cut(s) 702
Ksp22I TGATCA 1 cut(s) 372
KspI CCGCGG 1 cut(s) 561
Kzo9I GATC 2 cut(s) 372, 381
LpnPI CCDG 9 cut(s) 23, 77, 106, 161, 264, 357, 558, 680, 707
Lsp1109I GCAGC 2 cut(s) 418, 449
LweI GCATC 1 cut(s) 316
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 1 cut(s) 390
MalI GATC 2 cut(s) 374, 383
MboI GATC 2 cut(s) 372, 381
MboII GAAGA 5 cut(s) 41, 203, 320, 470, 487
MfeI CAATTG 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 698
MluCI AATT 2 cut(s) 186, 231
MluNI TGGCCA 1 cut(s) 698
MlyI GAGTC 1 cut(s) 605
Mox20I TGGCCA 1 cut(s) 698
MscI TGGCCA 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 698
MspA1I CMGCKG 3 cut(s) 440, 560, 713
MspR9I CCNGG 1 cut(s) 695
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 695
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 2 cut(s) 290, 554
NdeII GATC 2 cut(s) 372, 381
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 390
PceI AGGCCT 1 cut(s) 473
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 2 cut(s) 202, 521
PkrI GCNGC 4 cut(s) 408, 439, 559, 562
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 247
PvuII CAGCTG 2 cut(s) 440, 713
RsaI GTAC 2 cut(s) 509, 705
RsaNI GTAC 2 cut(s) 508, 704
SacII CCGCGG 1 cut(s) 561
SatI GCNGC 4 cut(s) 407, 438, 558, 561
Sau3AI GATC 2 cut(s) 372, 381
Sau96I GGNCC 1 cut(s) 247
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 1 cut(s) 695
SduI GDGCHC 1 cut(s) 107
SetI ASST 6 cut(s) 62, 270, 411, 442, 705, 715
SfaNI GCATC 1 cut(s) 316
Sfr303I CCGCGG 1 cut(s) 561
SgrBI CCGCGG 1 cut(s) 561
SinI GGWCC 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 2 cut(s) 186, 231
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 2 cut(s) 558, 560
SspI AATATT 1 cut(s) 31
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 693
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 1 cut(s) 705
TaqI TCGA 2 cut(s) 599, 680
TasI AATT 2 cut(s) 186, 231
TatI WGTACW 1 cut(s) 507
TauI GCSGC 2 cut(s) 560, 563
TfiI GAWTC 2 cut(s) 202, 521
TscAI CASTG 3 cut(s) 112, 281, 426
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 2 cut(s) 406, 437
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 3 cut(s) 141, 312, 346
TspGWI ACGGA 1 cut(s) 514
TspRI CASTG 3 cut(s) 112, 281, 426
VpaK11BI GGWCC 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
ZrmI AGTACT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.