Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007772

Physical Location & Seq

Genomic Coordinates Reverse (-)

21126307 .. 21138631

Gene Structure 12325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4554 bp

ATGCTTTGGGTTGAATTGGAGGCTGTGGACGCTTTCTTGGATGCTATGGAGAAGGCAATAAAAAACAAAGTTTCCAAAGCTGTTGTGCCTGCAATTGATGTCATGTTTCAGGCCTTAAGTGAATTTGGCGCAAAAGTTGTTCCTCCAAAAAGGATTTTGAAGATGCTTCCTGAACTATTTGACCATCAAGATCAGAATGTTCGTGCATGTTCCAAAGGGCTTACTCTTGAGCTTTGCCGTTGGATAGGAAAGGACCCTGTTAAATCAATATTGTTTGAGAAGATGAGGGATACAATGAAAAAAGAGTTGGAGGCTGAGCTTGTAAATGTTACAGGGACAGCCAGGCCATCTCGCAAAATCAGATCGGATCAAGACAAGGAGCCAGAAAAGGAAGCTGTTTCTGAAGTAGTTGGTCCTGGTCCTTTGGAGGAATCTGCAGCAGATGCTCCTCAGGAAATAGATGAATATGAGCTTGTTGATCCGGTTGATATATTGACTCCTCTGGAGAAGTCAGGATTTTGGGACGGAGTGAAAGCTACAAAGTGGTCAGAGCGAAAGGAGGCTGTTGCAGAGCTAACCAAGCTTGCTTCAACTAAAAGAATTGCCCCCGGCGATTTTACAGAAATCTGTCGGACATTAAAGAAGCTTGTAACAGATGTGAACATAGCTGTTGCAGTTGAAGCTATTCAAGCTATTGGTAATCTTGCTAAGGGTTTAAGGACTCATTTTTCTGGAAGTTCACGATTTCTATTGCCAGGTTTACTTGAAAAATTGAAAGAAAAAAAGCCAACTATGAGCGAGGCACTCTCTCAAACTCTTCAAGCAATGCATACTGCTGGCTGCTTAAATCTCATTGACATAGCTGAAGATATTAAGACAGCAGTAAAAAATAAAGTACCCCTTGTGCGTTCATTGACTTTGAACTGGGTGACATTTTGTATTGAAACAAGCAACAAGGCTGTTGTTTTAAAGTTACACAAGGACTACGTTCCTATATTTATGGAGTGCCTCAACGATGGAACCCCAGAAGTGAGGGATGCATCCTTTTCAGCTTTGACAGCAATAGCTAAGATGGTTGGTATGAGGCCCTTGGAAAGGTCACTTGAGAAACTTGATGATGTCAGAAGAAAGAAGCTCTCTGAAATGATTATGGGTTCTGAAGGTGGTGCATCCACTACTGCAAGCTCAGCCCAAAGCTCTGGTGTGACTGCACCCTCTTTGGAGACTACGGACAGTTCATTTGTTCGAAGGTCAGCTGCAAGCATGCTTAGTGGGAGGAGGCCTGTTCAGGCAGCTCCTGCAAAACAAAAAGGGGGATCTGTTAAATCGGGTGGCAGTAAGAAAGGAGATGCAACTGTGCAGCCAAAAGCTTCTAAGTTAGTTGAAACCCCTGAAGATGTTGAGCCAGGAGAAATGAGTCTTGAAGAGATTGAAAGCAGATTAGGCTCTCTTATACAAGAAGAAACTGTCTCTCAATTAAAAAGTAGTGCATGGAAAGAGCGGCTTGAAGCCATATCCTCATTTAGACAGCAAGTCGAAGGTTTACAGGACATTGACCTGTCAATTGAGATGTTAGTTCGTTTACTTTGTGCTGTCCCTGGTTGGAGTGAAAAAAATGTTCAGGTTCAGCAACAGGTTATTGAAGTTATTACCTATATGGCGTCCACTGCAAAGAAGTTTCCTAAGAAATGTGTAGTACTTTGTCTTCTGGGTATTAGTGAACGGGTTGCAGATATCAAGACTCGGACTCATGCCATGAAGTGCCTCACTACTTTTTCTGAAGCCATAGGTCCAGGATTAGTTTTCGAAAGACTTTATAAAATTATGAAAGAGCACAAGAACCCTAAGGTTCTCAGCGAGGGAGTACTGTGGATGGTTTCGGCAGTTGAAGACTTTGGTGTCTCACATGTGAAACTTAAGGATTTGATTGATTTTTGTAAAGAAACTGGACTTCAGTCCAGTGTTGCTGCCACTAGGAACTCTACTATTAAGCTTTTGGGTGCTATACATAAATTTGTTGGTCCAGATATTAAAGGGTTTCTTACTGATGTTAAACCTGCACTACTCAGTGCACTGGACGCGGAGTATGAAAAGAATCCATTTGAGGGTGCTTCTGTGGTTCTGAAGAGAAGTGTTAGGGCAACGGAATCTACTTCATCTGTCTTTGTTGGCGGGTTAGATGGCCTTCCACGTGAAGATATTAGCGGAAAGGTCACACCCACTCTGCTGAAGAGCTTGGAGAGTCCTGATTGGAAGGTTCGCTTGGAGTCAATAGAAGCCGTCGATAAGATTTTAGAAGAGGCTAATAAGCGCATCCAGCCAACTGGAACTGCGGAGTTGTTTGGTGCCTTAAGGGGGCGCTTATATGATAGCAATAAGAACTTGGTCGCTGCAACCTTAACGGTTGTTGGTCATGTTGCTTCTGCAATGGGCGCACCAGTTGAAAAGTTCAGCAAGGGCATTCTGTTGGATGTTTTGAAATGTCTAGGAGACAATAAGAAGCATATGAGAGAATGCACTTTAACTGCTTTAGACTCGTGGCTCTCTGCTGTTCATCTTGATAAAATGGTTCCTTATATTACAGCCGCTATATCAGACGCCAAACTTGGTGCAGAAGGGCGGAAAGATCTTTTCGAGTGGTTGACAAGACAGCTTTCTGGGTTAAGTGAATTCTCTGATGCTGCTCATCTTTTGAAACCAGCTTCCTCTGCTTTGACGGATAAATCCTCAGATGTTCGTAAAGCATCAGAGACATGTGTTTCTGAAATTTTGAGAGTTAGTGGGCATGAAACAGTTGAGAAGATTTTGAGAGATATTCATGGGCCAACTTTAGCTCTTGTTGAACGATTGAGGCCTCATGTATCTTTTCAAGAATCTTTTGAGTCGGGCAAAGCAATATCGATGGCCCCAACTTCCAAAAGCATTTCAAAGGCTGGAAAGCCTGCTTCCAATGGAGTTTTGAAGCATGGAGCCAAAGCTACTTCAAGGACCATTCCCACAAAGGGATTAAATTCAATGCTGTCCGTCCAAGATATAGCTGTGCAGTCACAGGCCTTGATAAATGTTAAAGATTCAATTAAGGAGGATAGAGAGCGATTGGTAGCTAAGAAGTTTAAGTTTGAAGAGCCACGGATAGAACAGATTCAAGATCTTGAGAATGATATGACGAAGTACTTTAGAGAGGATGTGCATAGGCGGCTTCTTTCTACTGATTTTAAGAAGCAAGTTGATGGCCTTGAGATACTACAGAAGGCACTTCCAACCATTAAAAAGGAAATTATTGAAGTATTGGATATACTGCTGAGGTGGTTTGTTTTACAATTTTGTAAATCGAACACAACATGCCTGTTAAAGGTGTTGGAATTTCTTCCAGAACTTTTTGATACATTTAGGGACGAGGCATACATGTTGACTGAATCAGAAGCAGCCATATTTTTTCCATGCTTGATAGAGAAGCTCGGGCATAACATTGAGAAAGTGCGAGAAAAAATGCGGGAGTTGACCAAACAAATTGTGCAGGCATATACCGCTGCAAAAAGTTTCCCTTATATTTTGGAGGGATTGCGTTCTAAGAACAACCGTACTCGAATTGAGTGTGCTGATCTTGTGGGATATTTGATTGATCACCATGTAGCTGAGATTAGTGGACAACTAAAGTCCTTGCAAATTGTTGCGAGCTTGACAGCAGAAAGAGATGGTGAAATTAGAAAAGCTGCTTTAAATACGCTAGCTACTGGTTATAAGATTCTTGGTGAGGACATATGGAGATATGTTGGAAAGTTAACAGATGCTCAGAAAAGCATGCTAGATGATCGATTTAAGTGGAAGGTTCGAGAAATGGAGAAAAGGAAGGAAGGAAAGCCAGGCGAAGCTAGGGCTTCTCTGAGGCGTTCTGTCAGGGAAATTGGGCCGGATGTAGCAGAGCAAAGCGGGGAGGTTGCACGATCTGTTTCCAGTCCAACACTTTCTAGGAGAAACTATGGCCATCCTGAGCCTCACATGGAGAGGCAGCTGGTGCCACCCAATGTACTCACTAGTGCCAATGGCCCCACAGACTGGAATGAAGCTTTGGATATCATTTCTTTTGGTTCTCCTGAGCAGTCAGTTGAAGGAATGAAAGTCGTGTGTCATGAGTTGGCACAGGCGACTAATGATCCAGAAGGCAGTGCTATGGATGAACTAGTGCGGGATGCAGATAGACTTGTTTCTTGCTTGGCAAATAAGGTAGCAAAGACTTTTGACTTCAGTTTGACAGGAGCTTCATCTAGGTCATGTAAATATGTCCTGAACACTCTTATGCAGACTTTTCAAAATAAAAGACTTGCTTATGCTGTCAAGGAAAGTACTCTTGACAGTCTAATCACTGAGCTCCTACTGTGGCTTTTGGATGAAAGGGTTCCCCATATGGATGATGGCAGCCAACTCCTGAAAGCCTTGAATGTTTTGATGCTAAAGATTCTGATCGATCTGAAGGGAGTCTTCGTCCTTTGTTGTTCTCATCAACCTCTTACGCCCTTTAGATCCCTCAAGATGGCCATCACCTGCTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

1518

Amino Acids

167.81

Weight (kDa)

8.08

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XMAP215_CLASP_TOG	PF21041	1 - 106	7.6e-28	XMAP215/Dis1/CLASP, TOG domain
XMAP215_CLASP_TOG	PF21041	180 - 381	1.4e-07	XMAP215/Dis1/CLASP, TOG domain
CLASP_N	PF12348	181 - 362	8.2e-10	CLASP N terminal
XMAP215_CLASP_TOG	PF21041	492 - 695	5.5e-12	XMAP215/Dis1/CLASP, TOG domain
XMAP215_CLASP_TOG	PF21041	1066 - 1273	1.6e-06	XMAP215/Dis1/CLASP, TOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35630 AT2G35630
fragaria_vesca	FvH4_7g33390 FvH4_7g33390 FvH4_7g33390
malus_domestica	MD01G1232200.v1.1 MD07G1304000.v1.1
prunus_persica	Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1
pyrus_communis	pycom01g24060
rosa_chinensis	RchiOBHm_Chr1g0383361
rosa_laevigata	RLG00000026109
rosa_multiflora	Rmu_sc0007173.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277360
rosa_rugosa	Rorug01G0440800 Rorug01G0440800 Rorug01G0440900
rosa_samantha	Rh1AG466800 Rh1BG424100 Rh1CG437200 Rh1DG456800
rosa_wichuraiana	Rw1G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1818, 3741
AarI	CACCTGC	1 cut(s)	4550
AasI	GACNNNNNNGTC	1 cut(s)	1898
Acc36I	ACCTGC	2 cut(s)	2065, 4550
AccB1I	GGYRCC	2 cut(s)	2345, 4015
AccB7I	CCANNNNNTGG	1 cut(s)	4056
AccBSI	CCGCTC	1 cut(s)	1501
AccII	CGCG	1 cut(s)	2081
AclWI	GGATC	5 cut(s)	375, 473, 1324, 4148, 4515
AcoI	YGGCCR	2 cut(s)	3982, 4533
AcsI	RAATTY	6 cut(s)	122, 2012, 2669, 2766, 3010, 3362
AcvI	CACGTG	1 cut(s)	2192
AcyI	GRCGYC	2 cut(s)	1661, 2598
AfaI	GTAC	7 cut(s)	897, 1698, 1866, 3173, 3583, 4029, 4345
AfiI	CCNNNNNNNGG	7 cut(s)	1095, 2105, 2355, 3002, 3352, 4056, 4531
AflII	CTTAAG	3 cut(s)	115, 1916, 2350
AflIII	ACRYGT	3 cut(s)	1906, 2753, 3405
AhdI	GACNNNNNGTC	1 cut(s)	1532
AhlI	ACTAGT	2 cut(s)	4034, 4180
AjnI	CCWGG	7 cut(s)	341, 415, 754, 1405, 1597, 1792, 3862
AjuI	GAANNNNNNNTTGG	6 cut(s)	290, 322, 2246, 2278, 4052, 4084
Alw21I	GWGCWC	3 cut(s)	1836, 2074, 4371
Alw26I	GTCTC	5 cut(s)	1217, 1474, 1906, 2484, 2744
Alw44I	GTGCAC	1 cut(s)	2070
AlwI	GGATC	5 cut(s)	375, 473, 1324, 4148, 4515
AlwNI	CAGNNNCTG	1 cut(s)	1298
Ama87I	CYCGRG	1 cut(s)	3458
ApaLI	GTGCAC	1 cut(s)	2070
ApoI	RAATTY	6 cut(s)	122, 2012, 2669, 2766, 3010, 3362
ArsI	GACNNNNNNTTYG	2 cut(s)	1223, 1255
Asp700I	GAANNNNTTC	4 cut(s)	684, 3141, 3366, 4395
AspLEI	GCGC	4 cut(s)	131, 2313, 2361, 2435
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	5 cut(s)	940, 3617, 3710, 3764, 4531
AsuII	TTCGAA	2 cut(s)	1246, 1806
AsuNHI	GCTAGC	1 cut(s)	3727
AvaI	CYCGRG	1 cut(s)	3458
AvaII	GGWCC	6 cut(s)	253, 413, 419, 1790, 2021, 2988
AxyI	CCTNAGG	2 cut(s)	450, 1845
BaeGI	GKGCMC	1 cut(s)	2074
BalI	TGGCCA	2 cut(s)	3984, 4535
BanI	GGYRCC	2 cut(s)	2345, 4015
BanII	GRGCYC	1 cut(s)	4371
BarI	GAAGNNNNNNTAC	2 cut(s)	1689, 1721
BauI	CACGAG	1 cut(s)	2536
BbrPI	CACGTG	1 cut(s)	2192
BbsI	GAAGAC	3 cut(s)	1697, 1896, 4471
Bbv12I	GWGCWC	3 cut(s)	1836, 2074, 4371
BbvCI	CCTCAGC	1 cut(s)	3302
BceAI	ACGGC	2 cut(s)	222, 2264
BciT130I	CCWGG	7 cut(s)	343, 417, 756, 1407, 1599, 1794, 3864
BciVI	GTATCC	1 cut(s)	283
BclI	TGATCA	1 cut(s)	3622
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	5 cut(s)	1217, 1474, 1906, 2484, 2744
BcuI	ACTAGT	2 cut(s)	4034, 4180
BfaI	CTAG	9 cut(s)	1974, 2486, 3728, 3806, 3873, 3969, 4035, 4181, 4266
BfmI	CTRYAG	2 cut(s)	435, 3245
BfoI	RGCGCY	1 cut(s)	2362
BfrI	CTTAAG	3 cut(s)	115, 1916, 2350
BfuAI	ACCTGC	2 cut(s)	2065, 4550
BfuI	GTATCC	1 cut(s)	283
BglII	AGATCT	2 cut(s)	2626, 3148
BlpI	GCTNAGC	2 cut(s)	315, 1186
BmcAI	AGTACT	4 cut(s)	1698, 1866, 3173, 4345
Bme1390I	CCNGG	8 cut(s)	343, 417, 609, 756, 1407, 1599, 1794, 3864
Bme18I	GGWCC	6 cut(s)	253, 413, 419, 1790, 2021, 2988
BmeRI	GACNNNNNGTC	1 cut(s)	1532
BmeT110I	CYCGRG	1 cut(s)	3458
BmrFI	CCNGG	8 cut(s)	343, 417, 609, 756, 1407, 1599, 1794, 3864
BmrI	ACTGGG	1 cut(s)	934
BmtI	GCTAGC	1 cut(s)	3731
BmuI	ACTGGG	1 cut(s)	934
BoxI	GACNNNNGTC	1 cut(s)	1954
BpiI	GAAGAC	3 cut(s)	1697, 1896, 4471
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
BpmI	CTGGAG	1 cut(s)	524
Bpu10I	CCTNAGC	4 cut(s)	708, 3302, 3990, 4095
Bpu1102I	GCTNAGC	2 cut(s)	315, 1186
Bpu14I	TTCGAA	2 cut(s)	1246, 1806
BpuEI	CTTGAG	5 cut(s)	248, 1124, 3173, 3257, 4511
BpuMI	CCSGG	1 cut(s)	609
Bsa29I	ATCGAT	3 cut(s)	2900, 3814, 4464
BsaAI	YACGTR	1 cut(s)	2192
BsaBI	GATNNNNATC	2 cut(s)	4460, 4535
BsaHI	GRCGYC	2 cut(s)	1661, 2598
BsaJI	CCNNGG	4 cut(s)	607, 1089, 1597, 3128
BsaWI	WCCGGW	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	4467, 4497
Bsc4I	CCNNNNNNNGG	7 cut(s)	1095, 2105, 2355, 3002, 3352, 4056, 4531
Bse1I	ACTGG	9 cut(s)	929, 1951, 1959, 2079, 2329, 2438, 3739, 3954, 4061
Bse21I	CCTNAGG	2 cut(s)	450, 1845
Bse3DI	GCAATG	2 cut(s)	831, 2433
Bse8I	GATNNNNATC	2 cut(s)	4460, 4535
BseBI	CCWGG	7 cut(s)	343, 417, 756, 1407, 1599, 1794, 3864
BseCI	ATCGAT	3 cut(s)	2900, 3814, 4464
BseDI	CCNNGG	4 cut(s)	607, 1089, 1597, 3128
BseJI	GATNNNNATC	2 cut(s)	4460, 4535
BseLI	CCNNNNNNNGG	7 cut(s)	1095, 2105, 2355, 3002, 3352, 4056, 4531
BseMI	GCAATG	2 cut(s)	831, 2433
BseNI	ACTGG	9 cut(s)	929, 1951, 1959, 2079, 2329, 2438, 3739, 3954, 4061
BseRI	GAGGAG	3 cut(s)	438, 489, 1291
BseSI	GKGCMC	1 cut(s)	2074
BsgI	GTGCAG	6 cut(s)	1194, 1379, 2043, 2631, 3062, 3536
Bsh1236I	CGCG	1 cut(s)	2081
BshNI	GGYRCC	2 cut(s)	2345, 4015
BshVI	ATCGAT	3 cut(s)	2900, 3814, 4464
BsiHKAI	GWGCWC	3 cut(s)	1836, 2074, 4371
BsiHKCI	CYCGRG	1 cut(s)	3458
BsiSI	CCGG	3 cut(s)	482, 609, 3911
BslFI	GGGAC	4 cut(s)	349, 536, 1580, 3407
BslI	CCNNNNNNNGG	7 cut(s)	1095, 2105, 2355, 3002, 3352, 4056, 4531
BsmAI	GTCTC	5 cut(s)	1217, 1474, 1906, 2484, 2744
BsmFI	GGGAC	4 cut(s)	349, 536, 1580, 3407
BsmI	GAATGC	2 cut(s)	2460, 2519
BsoBI	CYCGRG	1 cut(s)	3458
Bsp119I	TTCGAA	2 cut(s)	1246, 1806
Bsp1286I	GDGCHC	3 cut(s)	1836, 2074, 4371
Bsp1720I	GCTNAGC	2 cut(s)	315, 1186
BspDI	ATCGAT	3 cut(s)	2900, 3814, 4464
BspFNI	CGCG	1 cut(s)	2081
BspHI	TCATGA	1 cut(s)	4129
BspMAI	CTGCAG	1 cut(s)	439
BspMI	ACCTGC	2 cut(s)	2065, 4550
BspOI	GCTAGC	1 cut(s)	3731
BspPI	GGATC	5 cut(s)	375, 473, 1324, 4148, 4515
BspQI	GCTCTTC	2 cut(s)	2225, 3117
BspT104I	TTCGAA	2 cut(s)	1246, 1806
BspT107I	GGYRCC	2 cut(s)	2345, 4015
BspTI	CTTAAG	3 cut(s)	115, 1916, 2350
BsrBI	CCGCTC	1 cut(s)	1501
BsrDI	GCAATG	2 cut(s)	831, 2433
BsrI	ACTGG	9 cut(s)	929, 1951, 1959, 2079, 2329, 2438, 3739, 3954, 4061
BssECI	CCNNGG	4 cut(s)	607, 1089, 1597, 3128
BssNI	GRCGYC	2 cut(s)	1661, 2598
BssSI	CACGAG	1 cut(s)	2536
BssT1I	CCWWGG	1 cut(s)	1089
Bst2BI	CACGAG	1 cut(s)	2536
Bst2UI	CCWGG	7 cut(s)	343, 417, 756, 1407, 1599, 1794, 3864
Bst4CI	ACNGT	9 cut(s)	1235, 1357, 1468, 1869, 2404, 2794, 3581, 4355, 4377
Bst6I	CTCTTC	6 cut(s)	822, 1419, 2120, 2225, 2292, 3117
BstACI	GRCGYC	2 cut(s)	1661, 2598
BstAFI	CTTAAG	3 cut(s)	115, 1916, 2350
BstAPI	GCANNNNNTGC	3 cut(s)	443, 1298, 4015
BstBAI	YACGTR	1 cut(s)	2192
BstBI	TTCGAA	2 cut(s)	1246, 1806
BstDSI	CCRYGG	1 cut(s)	3128
BstENI	CCTNNNNNAGG	2 cut(s)	1093, 3350
BstFNI	CGCG	1 cut(s)	2081
BstH2I	RGCGCY	1 cut(s)	2362
BstHHI	GCGC	4 cut(s)	131, 2313, 2361, 2435
BstMAI	GTCTC	5 cut(s)	1217, 1474, 1906, 2484, 2744
BstNI	CCWGG	7 cut(s)	343, 417, 756, 1407, 1599, 1794, 3864
BstNSI	RCATGY	7 cut(s)	210, 1267, 1910, 2757, 3345, 3409, 3805
BstPAI	GACNNNNGTC	1 cut(s)	1954
BstSCI	CCNGG	8 cut(s)	341, 415, 607, 754, 1405, 1597, 1792, 3862
BstSFI	CTRYAG	2 cut(s)	435, 3245
BstSLI	GKGCMC	1 cut(s)	2074
BstUI	CGCG	1 cut(s)	2081
BstV2I	GAAGAC	3 cut(s)	1697, 1896, 4471
BstX2I	RGATCY	4 cut(s)	1316, 2626, 3148, 4520
BstXI	CCANNNNNNTGG	2 cut(s)	1199, 2324
BstYI	RGATCY	4 cut(s)	1316, 2626, 3148, 4520
Bsu15I	ATCGAT	3 cut(s)	2900, 3814, 4464
Bsu36I	CCTNAGG	2 cut(s)	450, 1845
BsuI	GTATCC	1 cut(s)	283
BsuTUI	ATCGAT	3 cut(s)	2900, 3814, 4464
BtgI	CCRYGG	1 cut(s)	3128
BtsI	GCAGTG	2 cut(s)	1665, 4171
BtsIMutI	CAGTG	6 cut(s)	1665, 1966, 2072, 2074, 4171, 4362
BveI	ACCTGC	2 cut(s)	2065, 4550
CaiI	CAGNNNCTG	1 cut(s)	1298
CciI	TCATGA	1 cut(s)	4129
CfoI	GCGC	4 cut(s)	131, 2313, 2361, 2435
ClaI	ATCGAT	3 cut(s)	2900, 3814, 4464
CseI	GACGC	4 cut(s)	38, 1650, 2087, 2606
Csp6I	GTAC	7 cut(s)	896, 1697, 1865, 3172, 3582, 4028, 4344
CviQI	GTAC	7 cut(s)	896, 1697, 1865, 3172, 3582, 4028, 4344
DraI	TTTAAA	2 cut(s)	969, 3720
DrdI	GACNNNNNNGTC	1 cut(s)	1898
DriI	GACNNNNNGTC	1 cut(s)	1532
DseDI	GACNNNNNNGTC	1 cut(s)	1898
EaeI	YGGCCR	2 cut(s)	3982, 4533
Eam1104I	CTCTTC	6 cut(s)	822, 1419, 2120, 2225, 2292, 3117
Eam1105I	GACNNNNNGTC	1 cut(s)	1532
EarI	CTCTTC	6 cut(s)	822, 1419, 2120, 2225, 2292, 3117
EciI	GGCGGA	1 cut(s)	2635
Ecl136II	GAGCTC	1 cut(s)	4369
Eco130I	CCWWGG	1 cut(s)	1089
Eco147I	AGGCCT	4 cut(s)	113, 1282, 2854, 3053
Eco24I	GRGCYC	1 cut(s)	4371
Eco32I	GATATC	2 cut(s)	1735, 4075
Eco47I	GGWCC	6 cut(s)	253, 413, 419, 1790, 2021, 2988
Eco53kI	GAGCTC	1 cut(s)	4369
Eco72I	CACGTG	1 cut(s)	2192
Eco81I	CCTNAGG	2 cut(s)	450, 1845
Eco88I	CYCGRG	1 cut(s)	3458
EcoICRI	GAGCTC	1 cut(s)	4369
EcoNI	CCTNNNNNAGG	2 cut(s)	1093, 3350
EcoO109I	RGGNCCY	2 cut(s)	253, 1086
EcoRI	GAATTC	1 cut(s)	2669
EcoRII	CCWGG	7 cut(s)	341, 415, 754, 1405, 1597, 1792, 3862
EcoRV	GATATC	2 cut(s)	1735, 4075
EcoT14I	CCWWGG	1 cut(s)	1089
EcoT22I	ATGCAT	2 cut(s)	831, 1042
EcoT38I	GRGCYC	1 cut(s)	4371
ErhI	CCWWGG	1 cut(s)	1089
FaqI	GGGAC	4 cut(s)	349, 536, 1580, 3407
FauI	CCCGC	4 cut(s)	2165, 3486, 3923, 4179
FauNDI	CATATG	3 cut(s)	2505, 3761, 4404
FbaI	TGATCA	1 cut(s)	3622
FriOI	GRGCYC	1 cut(s)	4371
FspBI	CTAG	9 cut(s)	1974, 2486, 3728, 3806, 3873, 3969, 4035, 4181, 4266
GlaI	GCGC	4 cut(s)	130, 2312, 2360, 2434
GsuI	CTGGAG	1 cut(s)	524
HaeII	RGCGCY	1 cut(s)	2362
HapII	CCGG	3 cut(s)	482, 609, 3911
HgaI	GACGC	4 cut(s)	38, 1650, 2087, 2606
HhaI	GCGC	4 cut(s)	131, 2313, 2361, 2435
Hin1I	GRCGYC	2 cut(s)	1661, 2598
Hin6I	GCGC	4 cut(s)	129, 2311, 2359, 2433
HinP1I	GCGC	4 cut(s)	129, 2311, 2359, 2433
HincII	GTYRAC	4 cut(s)	2643, 3411, 3501, 3783
HindII	GTYRAC	4 cut(s)	2643, 3411, 3501, 3783
HindIII	AAGCTT	5 cut(s)	581, 644, 1368, 1991, 4065
HpaI	GTTAAC	1 cut(s)	3783
HpaII	CCGG	3 cut(s)	482, 609, 3911
HphI	GGTGA	5 cut(s)	940, 3617, 3710, 3764, 4531
Hpy99I	CGWCG	1 cut(s)	2285
HpyCH4III	ACNGT	9 cut(s)	1235, 1357, 1468, 1869, 2404, 2794, 3581, 4355, 4377
HpyCH4IV	ACGT	2 cut(s)	987, 2191
HpySE526I	ACGT	2 cut(s)	987, 2191
Hsp92I	GRCGYC	2 cut(s)	1661, 2598
HspAI	GCGC	4 cut(s)	129, 2311, 2359, 2433
Ksp22I	TGATCA	1 cut(s)	3622
KspAI	GTTAAC	1 cut(s)	3783
LguI	GCTCTTC	2 cut(s)	2225, 3117
LmnI	GCTCC	6 cut(s)	379, 451, 1300, 2969, 4256, 4374
MaeI	CTAG	9 cut(s)	1974, 2486, 3728, 3806, 3873, 3969, 4035, 4181, 4266
MaeII	ACGT	2 cut(s)	987, 2191
MaeIII	GTNAC	8 cut(s)	328, 649, 928, 972, 1098, 1204, 2212, 3045
MbiI	CCGCTC	1 cut(s)	1501
MfeI	CAATTG	2 cut(s)	93, 1563
MflI	RGATCY	4 cut(s)	1316, 2626, 3148, 4520
MhlI	GDGCHC	3 cut(s)	1836, 2074, 4371
MlsI	TGGCCA	2 cut(s)	3984, 4535
MluNI	TGGCCA	2 cut(s)	3984, 4535
MmeI	TCCRAC	9 cut(s)	221, 288, 611, 1583, 2448, 3284, 3339, 3754, 3983
Mox20I	TGGCCA	2 cut(s)	3984, 4535
Mph1103I	ATGCAT	2 cut(s)	831, 1042
MroXI	GAANNNNTTC	4 cut(s)	684, 3141, 3366, 4395
MscI	TGGCCA	2 cut(s)	3984, 4535
MslI	CAYNNNNRTG	2 cut(s)	4295, 4407
Msp20I	TGGCCA	2 cut(s)	3984, 4535
MspA1I	CMGCKG	3 cut(s)	1256, 3530, 4012
MspCI	CTTAAG	3 cut(s)	115, 1916, 2350
MspI	CCGG	3 cut(s)	482, 609, 3911
MspR9I	CCNGG	8 cut(s)	343, 417, 609, 756, 1407, 1599, 1794, 3864
MunI	CAATTG	2 cut(s)	93, 1563
Mva1269I	GAATGC	2 cut(s)	2460, 2519
MvaI	CCWGG	7 cut(s)	343, 417, 756, 1407, 1599, 1794, 3864
MvnI	CGCG	1 cut(s)	2081
NciI	CCSGG	1 cut(s)	609
NdeI	CATATG	3 cut(s)	2505, 3761, 4404
NheI	GCTAGC	1 cut(s)	3727
NmuCI	GTSAC	5 cut(s)	928, 1098, 1204, 2212, 3045
NsiI	ATGCAT	2 cut(s)	831, 1042
NspI	RCATGY	7 cut(s)	210, 1267, 1910, 2757, 3345, 3409, 3805
NspV	TTCGAA	2 cut(s)	1246, 1806
PaeI	GCATGC	2 cut(s)	1267, 3805
PagI	TCATGA	1 cut(s)	4129
PaqCI	CACCTGC	1 cut(s)	4550
PceI	AGGCCT	4 cut(s)	113, 1282, 2854, 3053
PciI	ACATGT	3 cut(s)	1906, 2753, 3405
PciSI	GCTCTTC	2 cut(s)	2225, 3117
PctI	GAATGC	2 cut(s)	2460, 2519
PdmI	GAANNNNTTC	4 cut(s)	684, 3141, 3366, 4395
PfeI	GAWTC	9 cut(s)	431, 2095, 2147, 2873, 3071, 3142, 3416, 3745, 4456
PflMI	CCANNNNNTGG	1 cut(s)	4056
PfoI	TCCNGGA	1 cut(s)	1792
PmaCI	CACGTG	1 cut(s)	2192
PmlI	CACGTG	1 cut(s)	2192
Ppu21I	YACGTR	1 cut(s)	2192
PpuMI	RGGWCCY	1 cut(s)	253
PscI	ACATGT	3 cut(s)	1906, 2753, 3405
PshAI	GACNNNNGTC	1 cut(s)	1954
PsiI	TTATAA	2 cut(s)	1818, 3741
Psp124BI	GAGCTC	1 cut(s)	4371
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	7 cut(s)	341, 415, 754, 1405, 1597, 1792, 3862
PspCI	CACGTG	1 cut(s)	2192
PspGI	CCWGG	7 cut(s)	341, 415, 754, 1405, 1597, 1792, 3862
PspPPI	RGGWCCY	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	1298
PsuI	RGATCY	4 cut(s)	1316, 2626, 3148, 4520
PvuII	CAGCTG	2 cut(s)	1256, 4012
RsaI	GTAC	7 cut(s)	897, 1698, 1866, 3173, 3583, 4029, 4345
RsaNI	GTAC	7 cut(s)	896, 1697, 1865, 3172, 3582, 4028, 4344
RseI	CAYNNNNRTG	2 cut(s)	4295, 4407
SacI	GAGCTC	1 cut(s)	4371
SapI	GCTCTTC	2 cut(s)	2225, 3117
ScaI	AGTACT	4 cut(s)	1698, 1866, 3173, 4345
ScrFI	CCNGG	8 cut(s)	343, 417, 609, 756, 1407, 1599, 1794, 3864
SduI	GDGCHC	3 cut(s)	1836, 2074, 4371
SfcI	CTRYAG	2 cut(s)	435, 3245
SfuI	TTCGAA	2 cut(s)	1246, 1806
SinI	GGWCC	6 cut(s)	253, 413, 419, 1790, 2021, 2988
SmiMI	CAYNNNNRTG	2 cut(s)	4295, 4407
SmlI	CTYRAG	8 cut(s)	115, 227, 1103, 1916, 2350, 3152, 3236, 4526
SmoI	CTYRAG	8 cut(s)	115, 227, 1103, 1916, 2350, 3152, 3236, 4526
SpeI	ACTAGT	2 cut(s)	4034, 4180
SphI	GCATGC	2 cut(s)	1267, 3805
SseBI	AGGCCT	4 cut(s)	113, 1282, 2854, 3053
SspI	AATATT	1 cut(s)	270
SspMI	CTAG	9 cut(s)	1974, 2486, 3728, 3806, 3873, 3969, 4035, 4181, 4266
SstI	GAGCTC	1 cut(s)	4371
StuI	AGGCCT	4 cut(s)	113, 1282, 2854, 3053
StyD4I	CCNGG	8 cut(s)	341, 415, 607, 754, 1405, 1597, 1792, 3862
StyI	CCWWGG	1 cut(s)	1089
TaaI	ACNGT	9 cut(s)	1235, 1357, 1468, 1869, 2404, 2794, 3581, 4355, 4377
TaiI	ACGT	2 cut(s)	990, 2194
TatI	WGTACW	5 cut(s)	1696, 1864, 3171, 4027, 4343
TauI	GCSGC	3 cut(s)	1504, 2588, 3199
TfiI	GAWTC	9 cut(s)	431, 2095, 2147, 2873, 3071, 3142, 3416, 3745, 4456
TscAI	CASTG	6 cut(s)	1672, 1966, 2074, 2079, 4171, 4369
TseFI	GTSAC	5 cut(s)	928, 1098, 1204, 2212, 3045
Tsp45I	GTSAC	5 cut(s)	928, 1098, 1204, 2212, 3045
TspGWI	ACGGA	6 cut(s)	540, 1244, 2159, 2732, 3013, 3145
TspRI	CASTG	6 cut(s)	1672, 1966, 2074, 2079, 4171, 4369
Van91I	CCANNNNNTGG	1 cut(s)	4056
Vha464I	CTTAAG	3 cut(s)	115, 1916, 2350
VneI	GTGCAC	1 cut(s)	2070
VpaK11BI	GGWCC	6 cut(s)	253, 413, 419, 1790, 2021, 2988
XagI	CCTNNNNNAGG	2 cut(s)	1093, 3350
XapI	RAATTY	6 cut(s)	122, 2012, 2669, 2766, 3010, 3362
XceI	RCATGY	7 cut(s)	210, 1267, 1910, 2757, 3345, 3409, 3805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4409
XmnI	GAANNNNTTC	4 cut(s)	684, 3141, 3366, 4395
XspI	CTAG	9 cut(s)	1974, 2486, 3728, 3806, 3873, 3969, 4035, 4181, 4266
ZrmI	AGTACT	4 cut(s)	1698, 1866, 3173, 4345
Zsp2I	ATGCAT	2 cut(s)	831, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.