Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007772

Physical Location & Seq

Genomic Coordinates Reverse (-)

53870354 .. 53872485

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0440800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAGGAGAAATCGCAGGACCCAACTGGTTTGGCCGGGGAGGGCAAAGCTAGAAATGACGGCAGAAGAGACGAGAAGCAGAAATTAGAAGTGGGTAGAGCGAGTGGACAGGTTAGATACAAACGAAGCTCGAACTTGAATGAGATAATGAAAGATGGACAGCTACTTGATAGTGACAGTAATGGAGCAAGTGCGTCCCTTACTGAACATGCTCCTGAATCAAGCAGCTTAAATCTGCCAGAAGCCAAAGGTTCAAAGCAAAAAGTACAGGATGGTCATTCTACCAAAACCAAATGCATTTCTGTTCTTGCAGGTCAAGGCACGCAAGATGAACAGTCTCCAGGAGGTGGGAATGCAAAACATGAAAGTGAAAAGATCCAGCGGCTGTCCAAATCCAAGAAGAAGAAAGATCTTAACTTGCCTCGTCGTGCTTCTAAGCGACTAGCTGGTATTGAAGTTGATACAGTGCCAGAACTGAAAGCAAGCACTCGAGCACGTCGAGTTGGCAGCAAACAGCCGGATAATTCGGCTGGTTGTACATTCCAGCAGCCAGAAAAGCAAGATTTTGCTTCTGTTGTTCAGGAAGAGCATGATAAGGCTGAAGAGAAGCCTGGAGTTCCTTCAGATTCGCCTCTTGCTGATTTCTTCACAGATCCATGCATTGCATTTGCAATAAAGACTCTAAAGGATCATTCGGGGAACGGAGAAACAGACAATATGAGCTATGAGAAGCAGGAATGCAATGTATTTCCGCCTCCAGGCAACTTAGTTAAACAAGAAAATCATGATGGCATAGTTGGAACTGGTGAGACGTCGGGATCATCCATTACTGAACCCCCTTTCGGGAGTTCATGGCCGGACCCCTGCATTGAATTTGCTATAAAGACTCTCACAGGTGCAATCCCACTTGAGTATGACCCGCATATCGAGGAGTACTTCCAGAAGCAACTTAGTTCATCACAACAACACAAGGACAATCTTTTGCAGAAAGAGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

333

Amino Acids

36.26

Weight (kDa)

5.98

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35630 AT2G35630
fragaria_vesca	FvH4_7g33390 FvH4_7g33390 FvH4_7g33390
malus_domestica	MD01G1232200.v1.1 MD07G1304000.v1.1
prunus_persica	Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1
pyrus_communis	pycom01g24060
rosa_chinensis	RchiOBHm_Chr1g0383361
rosa_laevigata	RLG00000026109
rosa_multiflora	Rmu_sc0007173.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277360
rosa_rugosa	Rorug01G0440800 Rorug01G0440800 Rorug01G0440900
rosa_samantha	Rh1AG466800 Rh1BG424100 Rh1CG437200 Rh1DG456800
rosa_wichuraiana	Rw1G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	815
Acc36I	ACCTGC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	347
AciI	CCGC	3 cut(s)	382, 752, 920
AclWI	GGATC	4 cut(s)	370, 647, 696, 826
AcoI	YGGCCR	2 cut(s)	33, 854
AcsI	RAATTY	1 cut(s)	872
AcuI	CTGAAG	2 cut(s)	606, 621
AcyI	GRCGYC	1 cut(s)	812
AfaI	GTAC	3 cut(s)	267, 538, 935
AfiI	CCNNNNNNNGG	4 cut(s)	347, 758, 842, 843
AgsI	TTSAA	4 cut(s)	139, 255, 455, 872
AjiI	CACGTC	1 cut(s)	497
AjnI	CCWGG	3 cut(s)	340, 610, 757
AluBI	AGCT	6 cut(s)	50, 129, 163, 228, 446, 723
AluI	AGCT	6 cut(s)	50, 129, 163, 228, 446, 723
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	3 cut(s)	63, 342, 803
AlwI	GGATC	4 cut(s)	370, 647, 696, 826
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	2 cut(s)	33, 854
ApeKI	GCWGC	3 cut(s)	225, 507, 547
ApoI	RAATTY	1 cut(s)	872
AspS9I	GGNCC	2 cut(s)	19, 859
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	818
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	2 cut(s)	19, 859
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	3 cut(s)	237, 519, 559
BccI	CCATC	3 cut(s)	149, 266, 782
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	3 cut(s)	342, 612, 759
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	3 cut(s)	63, 342, 803
BfaI	CTAG	2 cut(s)	51, 443
BfuAI	ACCTGC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	4 cut(s)	226, 383, 508, 548
BlsI	GCNGC	4 cut(s)	227, 384, 509, 549
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	4 cut(s)	37, 342, 612, 759
Bme18I	GGWCC	2 cut(s)	19, 859
BmeT110I	CYCGRG	1 cut(s)	489
BmgBI	CACGTC	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	19, 859
BmiI	GGNNCC	2 cut(s)	21, 861
BmrFI	CCNGG	4 cut(s)	37, 342, 612, 759
BpmI	CTGGAG	3 cut(s)	324, 633, 741
BpuEI	CTTGAG	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	37
BsaHI	GRCGYC	1 cut(s)	812
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 758, 842, 843
Bse1I	ACTGG	2 cut(s)	31, 808
Bse3DI	GCAATG	2 cut(s)	660, 748
BseBI	CCWGG	3 cut(s)	342, 612, 759
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	277, 821
BseLI	CCNNNNNNNGG	4 cut(s)	347, 758, 842, 843
BseMI	GCAATG	2 cut(s)	660, 748
BseNI	ACTGG	2 cut(s)	31, 808
BseRI	GAGGAG	1 cut(s)	944
BseXI	GCAGC	3 cut(s)	237, 519, 559
BshFI	GGCC	2 cut(s)	35, 856
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	3 cut(s)	36, 518, 857
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	4 cut(s)	347, 758, 842, 843
BsmAI	GTCTC	3 cut(s)	63, 342, 803
BsmBI	CGTCTC	2 cut(s)	63, 803
BsmFI	GGGAC	1 cut(s)	181
BsmI	GAATGC	2 cut(s)	358, 743
BsnI	GGCC	2 cut(s)	35, 856
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	5 cut(s)	375, 409, 652, 688, 818
BspACI	CCGC	3 cut(s)	382, 752, 920
BspANI	GGCC	2 cut(s)	35, 856
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	2 cut(s)	21, 861
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	4 cut(s)	370, 647, 696, 826
BspQI	GCTCTTC	1 cut(s)	579
BsrDI	GCAATG	2 cut(s)	660, 748
BsrGI	TGTACA	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	31, 808
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	375, 409, 652, 688, 818
BssNI	GRCGYC	1 cut(s)	812
Bst2UI	CCWGG	3 cut(s)	342, 612, 759
Bst4CI	ACNGT	3 cut(s)	179, 336, 466
Bst6I	CTCTTC	3 cut(s)	61, 579, 597
BstACI	GRCGYC	1 cut(s)	812
BstAUI	TGTACA	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	323, 484
BstDEI	CTNAG	3 cut(s)	435, 766, 950
BstF5I	GGATG	2 cut(s)	277, 821
BstKTI	GATC	5 cut(s)	378, 412, 655, 691, 821
BstMAI	GTCTC	3 cut(s)	63, 342, 803
BstMBI	GATC	5 cut(s)	375, 409, 652, 688, 818
BstMWI	GCNNNNNNNGC	1 cut(s)	556
BstNI	CCWGG	3 cut(s)	342, 612, 759
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	4 cut(s)	35, 340, 610, 757
BstV1I	GCAGC	3 cut(s)	237, 519, 559
BstX2I	RGATCY	3 cut(s)	375, 409, 652
BstYI	RGATCY	3 cut(s)	375, 409, 652
BsuRI	GGCC	2 cut(s)	35, 856
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	277, 821
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	323, 484
CaiI	CAGNNNCTG	1 cut(s)	385
CciI	TCATGA	1 cut(s)	784
Cfr13I	GGNCC	2 cut(s)	19, 859
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	266, 537, 934
CviAII	CATG	6 cut(s)	209, 362, 590, 657, 785, 852
CviQI	GTAC	3 cut(s)	266, 537, 934
DdeI	CTNAG	3 cut(s)	435, 766, 950
DpnI	GATC	5 cut(s)	377, 411, 654, 690, 820
DpnII	GATC	5 cut(s)	375, 409, 652, 688, 818
EaeI	YGGCCR	2 cut(s)	33, 854
Eam1104I	CTCTTC	3 cut(s)	61, 579, 597
EarI	CTCTTC	3 cut(s)	61, 579, 597
EciI	GGCGGA	1 cut(s)	741
Eco47I	GGWCC	2 cut(s)	19, 859
Eco57I	CTGAAG	2 cut(s)	606, 621
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRII	CCWGG	3 cut(s)	340, 610, 757
EcoT22I	ATGCAT	2 cut(s)	299, 662
Esp3I	CGTCTC	2 cut(s)	63, 803
FaeI	CATG	6 cut(s)	212, 365, 593, 660, 788, 855
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	6 cut(s)	208, 361, 589, 656, 784, 851
FauI	CCCGC	1 cut(s)	927
Fnu4HI	GCNGC	4 cut(s)	226, 383, 508, 548
FokI	GGATG	2 cut(s)	284, 808
Fsp4HI	GCNGC	4 cut(s)	226, 383, 508, 548
FspBI	CTAG	2 cut(s)	51, 443
GluI	GCNGC	4 cut(s)	226, 383, 508, 548
GsuI	CTGGAG	3 cut(s)	324, 633, 741
HaeIII	GGCC	2 cut(s)	35, 856
HapII	CCGG	3 cut(s)	36, 518, 857
HgaI	GACGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	812
Hin1II	CATG	6 cut(s)	212, 365, 593, 660, 788, 855
HinfI	GANTC	4 cut(s)	218, 626, 679, 886
HpaII	CCGG	3 cut(s)	36, 518, 857
HphI	GGTGA	1 cut(s)	818
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	625
Hpy188III	TCNNGA	6 cut(s)	215, 581, 785, 816, 844, 940
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	3 cut(s)	429, 501, 817
HpyAV	CCTTC	1 cut(s)	630
HpyCH4III	ACNGT	3 cut(s)	179, 336, 466
HpyCH4IV	ACGT	2 cut(s)	496, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	556
HpyF3I	CTNAG	3 cut(s)	435, 766, 950
HpySE526I	ACGT	2 cut(s)	496, 812
Hsp92I	GRCGYC	1 cut(s)	812
Hsp92II	CATG	6 cut(s)	212, 365, 593, 660, 788, 855
Kzo9I	GATC	5 cut(s)	375, 409, 652, 688, 818
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	2 cut(s)	185, 217
Lsp1109I	GCAGC	3 cut(s)	237, 519, 559
MaeI	CTAG	2 cut(s)	51, 443
MaeII	ACGT	2 cut(s)	496, 812
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	5 cut(s)	377, 411, 654, 690, 820
MboI	GATC	5 cut(s)	375, 409, 652, 688, 818
MboII	GAAGA	6 cut(s)	78, 412, 415, 596, 614, 637
MflI	RGATCY	3 cut(s)	375, 409, 652
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	3 cut(s)	83, 523, 872
MlyI	GAGTC	2 cut(s)	673, 880
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	6 cut(s)	34, 338, 432, 642, 765, 922
Mph1103I	ATGCAT	2 cut(s)	299, 662
MseI	TTAA	3 cut(s)	230, 414, 771
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	3 cut(s)	36, 518, 857
MspR9I	CCNGG	4 cut(s)	37, 342, 612, 759
Mva1269I	GAATGC	2 cut(s)	358, 743
MvaI	CCWGG	3 cut(s)	342, 612, 759
MwoI	GCNNNNNNNGC	1 cut(s)	556
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	5 cut(s)	375, 409, 652, 688, 818
NlaIII	CATG	6 cut(s)	212, 365, 593, 660, 788, 855
NlaIV	GGNNCC	2 cut(s)	21, 861
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	2 cut(s)	299, 662
NspI	RCATGY	1 cut(s)	212
PaeR7I	CTCGAG	1 cut(s)	489
PagI	TCATGA	1 cut(s)	784
PciSI	GCTCTTC	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PctI	GAATGC	2 cut(s)	358, 743
PfeI	GAWTC	2 cut(s)	218, 626
PflMI	CCANNNNNTGG	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	227, 384, 509, 549
PleI	GAGTC	2 cut(s)	673, 880
PpsI	GAGTC	2 cut(s)	673, 880
PpuMI	RGGWCCY	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	3 cut(s)	340, 610, 757
PspGI	CCWGG	3 cut(s)	340, 610, 757
PspN4I	GGNNCC	2 cut(s)	21, 861
PspPI	GGNCC	2 cut(s)	19, 859
PspPPI	RGGWCCY	1 cut(s)	19
PspXI	VCTCGAGB	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	3 cut(s)	375, 409, 652
RsaI	GTAC	3 cut(s)	267, 538, 935
RsaNI	GTAC	3 cut(s)	266, 537, 934
RseI	CAYNNNNRTG	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	230, 414, 771
SatI	GCNGC	4 cut(s)	226, 383, 508, 548
Sau3AI	GATC	5 cut(s)	375, 409, 652, 688, 818
Sau96I	GGNCC	2 cut(s)	19, 859
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	2 cut(s)	673, 880
ScrFI	CCNGG	4 cut(s)	37, 342, 612, 759
SduI	GDGCHC	1 cut(s)	496
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	19, 859
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	489, 908
SmoI	CTYRAG	2 cut(s)	489, 908
Sse9I	AATT	3 cut(s)	83, 523, 872
SsiI	CCGC	3 cut(s)	382, 752, 920
SspMI	CTAG	2 cut(s)	51, 443
StyD4I	CCNGG	4 cut(s)	35, 340, 610, 757
TaaI	ACNGT	3 cut(s)	179, 336, 466
TaiI	ACGT	2 cut(s)	499, 815
TaqI	TCGA	4 cut(s)	131, 490, 499, 927
TasI	AATT	3 cut(s)	83, 523, 872
TatI	WGTACW	3 cut(s)	265, 536, 933
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	218, 626
Tru1I	TTAA	3 cut(s)	230, 414, 771
Tru9I	TTAA	3 cut(s)	230, 414, 771
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	225, 507, 547
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	6 cut(s)	17, 164, 345, 378, 840, 945
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	19, 859
XapI	RAATTY	1 cut(s)	872
XceI	RCATGY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	489
XspI	CTAG	2 cut(s)	51, 443
ZraI	GACGTC	1 cut(s)	813
ZrmI	AGTACT	1 cut(s)	935
Zsp2I	ATGCAT	2 cut(s)	299, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.