Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007772

Physical Location & Seq

Genomic Coordinates Forward (+)

67801069 .. 67815530

Gene Structure 14462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G040580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6003 bp

ATGTCGTCGGAGGAAGAGAAGCTGTTGAAGGAGGCGAAGAAATTGCCGTGGGATGATCGGCTTTTCCATAAGAACTGGAAGGTGCGGAATGAAGCCAACATCGACTTGGCTGCCCTATGCGACTCCATCACCGATCCAAAGGACTCTCGTCTTCGTGAATTTGGTTCGTTTTTTAGGAAGACTCTGGCGGATGCCAATTCGCCGGTACAAGAGAAGGCACTTGATGCATTGATTGCTTATTTACGAGCGGCTGATGCTGATGCTGGAAGGTATGGCAAGGAAGTTTGCGATACCATCGTTGCGAAATGCCTCACTGGCAGGCCGAAGACGGTGGAGAAGGCTCAGGCTTCCTTTATGCTTTGGGTAGAATTGGAGGCTGTGGACGCTTTCTTGGATGCCATGGAGAAAGCAATAAAAGCCAAAGTTGCCAAAGCTGTTGTGCCTGCAATTGATGTCATGTTTCAAGCCTTAAGTGAATTTGGCTCAAAAATTATTCCTCCGAAAAGGATTTTAAAGATGCTTCCTGAACTATTTGACCATCAAGATCAAAATGTTCGTGCATCTTCTAAAGGACTTACTCTTGAGCTTTGCCGTTGGATAGGAAAAGACCCTGTAAAATCCATATTGTTTGAAAAAATGAGGGATACGATGAAAAAAGAATTGGAGTCTGAGCTCGTCAATGTTACCGGGACAGCCAGGCCATCTCGCAAAATCAGATCTGAGCAAGACAAGGAGCCAGAAAGGGAAGTTGTATCTGAAGTTGTTGGTCCTGGTCTTTCTGAGGAATCTACAGCGGATGCTCCTCAGGAAATAGATGAATATGAGCTTGTTGATCCTGTTGATATATTGACTCCTCTGGATAAGTCTGGATTTTGGGATGGAGTGAAAGCATCCAAATGGTCAGAGCGAAAGGAGGCTGTTGCTGAGCTCACCAAGCTAGCTTCAACCAAAAGAATAGCTCCTGGTGACTTCACCGAAATATGTAGGACATTGAAGAAGCTTATAACAGATGTGAACATAGCTGTTGCAGTTGAAGCTATCCAAGCTCTCGGCAATCTTGCCAAGGGCCTAAGAACTCACTTCTCTGGGAGTTCGCGTTTTCTATTGCCAGGGTTACTTGAGAAATTGAAAGAGAAAAAGCCAACTATGAGTGAGGCGCTTACCCAGACTCTTCAAGCTATGCATACAGCTGGCTGCTTAAATCTTGTTGACATTGTTGAAGATGTTAAGACAGCAGTTAAAAATAAAGTACCTCTTGTACGATCATCGACTTTGAACTGGGTGACATTCTGTATTGAAACAAGTAACAAGGCTGTTGTTTTAAAGTTACACAAGGATTATGTTCCTATATTTATGGAGTGCCTCAATGATGGAACCCCAGAAGTGAGGGATGCAGCCTTTTCAGCTCTGACAGCAGTAGCTAAGTCGGTTGGTATGAGGCCTTTGGAGAGGTCCCTGGAGAAACTTGATGATGTCAGAAGAAAGAAGCTTTCTGAAATGATTATGGGTTACGAGGGTGGTACATCCACTGCTGCAAGCGCAGTTCAAAGCTCTGGTGTCACTGCAGCCTCTCTGGAGACTTCAGACAGTTCATTTGTTCGAAAGTCAGCTGCAAGCATGCTTAGTGGGAAGAGGCCTGTTCAGGCAGTTCCTGCTAAACAAAAAGTGGGATCTGGAAAATCTGGTGGCAGTAAGAAAGGGGAAGTAACTGTACAGTCAAAAGCTTCCAAGTCAGTTGAACCACCTGAAGACGTTGAGCCAGCAGAAATGAGTCTTGAAGAAATTGAAAGCAGATTAGGTTCTCTTATAAAAGCAGATACCATCTCTCAATTGAAGAGCACTGTGTGGAAAGAACGGCTTGAAGCCATATCCTCATTTAAACAAGAAGTGGAAGCTTTACAGGACATCAACCAGTCTGTTGAGTTATTAATTCGTTTACTTTGCGCTGTCCCTGGTTGGAGTGAAAAAAATGTTCAGGTTCAACAACAGGTAATTGAAGTTATTACCTACATAGCCTCCACTGCAATGAAATTTCCGAAGAAATGTGTGGTACTTTGTCTACTGGGTATAAGCGAGCGGGTAGCAGATATCAAGACTCGGACTCATGCCATGAAGTGTCTGACTTCTTTCTCTGAAGCCATAGGTCCAGGATTTATTTTTGAAAGACTTTACAAAATAATGAAAGAGCACAAGAACCCTAAGGTTCTTAGCGAGGGAATATTGTGGATGGTTTCAGCTGTTGAAGATTTTGGTGTCTCACATTTGAAGCTTAAGGATTTGATTGATTTTTGCAAAGATACTGGACTGCAGTCCAGTGCTGCTGCTACTAGGAATTCTACTATAAAACTTTTGGGCGTTACGCATAAGTTTGTTGGTCCAGATATTAAAGGATTTCTTACGGATGTCAAACCTGCACTGCTTAGTGCACTGGAAGCAGAGTATGAAAAAAATCCATTTGAGGGTGCTGCAGTGGTTCTGAAGAGAAATGTTCGAGCAACAGAATCGACTTCATCAATTTCTGCTAGTGGGTTGGACAGTCTTCCACGTGAAGATATTAGTGGAAAAATCACACCTACTCTGCTCAAGAATTTGGAGAGCCCTGATTGGAAGGTTCGCTTGGAGTCAATTGATGCTGTAAATAAAATTTTAGAAGAGGCTAATAAGCGCATCCAGCCAACTGGAACTGTGGAGTTATTTGGTGCCTTAAGGGGACGATTATATGACAGCAATAAGAACCTAGTTGCAGCAACCTTGACAGCTATTGGTAATGTTGCAACTGCAATGGGAGCACCGGTTGAAAAGGCGAGCAAGGGCATTCTGTCAGATATTTTGAAATGTATTGGAGACAATAAGAAGCATATGAGAGAATGCACTTTAGCTACTTTAGACTCATGGCTTTCTGCTGTGAATCTTGATAAAATGGTTCCTTATATCACGGCAGCTATAACAGAAACCAAGCTTGGTGCAGAAGGGCGCAAAGATCTTTTTGACTGGTTGACGAGGCAGCTTTCTGTGCTAAGTGATTATAATGATGCTGTACATCTTCTGAAACCAGCTTCCTCTGCTATGACGGATAAATCTTCAGATGTTCGTAAAGCAGCAGAGGCATGCATTGCTGAAATTTTGAGAGTTAGTGGACATGAAGCAGTAAAAAATTTTGAAAGATATTCAGGGCCAGCTTTAGCTCTTGTTCTTGAACGGTTGAAGCCTTTCGGATCTTTACAAGCAATATCAACGGGACCAACATCCAAAAGCATCCCAAAGGTTGGAAAATCTGCTTCCAATGGAGTGTTAAAGCCTGGAACGAAAGCCGTATCTTCAAGGACCATTGCAATGAAGGGATCAAGGCCAGGTTCAATACTGTCTGTCCAAGATATAGCTGTTCAGTCACAGGCCTTGCTAAATGTTAAAGATTCAGTTAAGGTGGATAGGGAGAGAATAGTGGTTAAGAGGTTTAAGTTTGAAGAGCCACGAATAGAACAGATTCAAGATCTTGAGAATGATATGATGAAGTACTTCAGAGAGGATCTGCATAGGCGGCTTCTTAGTACAGATTTTAAGAAGCAAGTAGATGGGCTTGAGATGCTGCAGAAGAAGGAAATTATTGAAGTTCTGGATATACTGCTTAGGTGGTTTGTTTTACAATTTTGTAAATCAAACACAACATCCCTGTTAAAGGTGCTGGAATTTCTTCATGACCTTTTTGACATGTTTAGGGATGAGGGATACATGTTGACCGAGTCAGAAGCAGCAATTCTTCTTCCATGCCTAATGGAGAAGCTTGGGCACAATGGTTCTGGAGTACGAAAAGAAATGAAGGAGCTGGCCAGACAAATTGTTCAGGCATATACTGCAGCAAAGAGTTTACCTTATATTTTGGAGGGATTGCGTTCTAAGAACTACCGGACACGAATTGAGTGTGCTGAACTTGTTGGATATTTGATCGATCATCATGGAGCTGAGATAAGTGGACAATTAAAATCTTTGCAAATTGTTGCTAGCTTGACTGCAGAAAGAGAGAATGAAATTAGGAAGGCTGCTCTAAATACGCTAGCTTCCGGTTATAAGCTTCTTGATATCGGGAAGCTAACAGGTGCTCAGAAAAGCTTGATAGAAGAGAGATTTAAGTATACGGTTAAAGATATGGAGAAAAACAAGGAAGGAAAGCCTGGTGAAGCTAGGGCTTCTTTAAGGCGTTCTGTCAGGGAAATTGGGTCTGATGTAGCAGAGCAGAGTGGGGAGGTTGCACGATCTGTTGCTGCTCCAACACTTGCTAGGGGCAATTATGGTCATTCTGAGATTCACAGGGAGAGACAGCTGTTACCTCGTGGATTTGCTGCTGTTAATGGCCCAACAGACTGGAATGAAGCTTTGGAGATCATTTCTTCTGAGGATCCTGATCAGTCGGTTGAAGGAATGAAAGTTGTGTGTCATGAGTTGGCACAGTCGACCAGTGATCCAGAAGGCAGTGCAATGGATGACCTAGTGAAGGATGCAGATAAACTTGTTTCATGCTTAGCAAAGAAGGTAGCAACGACTTTTGACTTCAGTTTGACAGGAGCTTCATCTAGGTCCTGTAAATATGTCCTGAACACTCTCATGCAGACATTTCAAAATAAAAGATTTGCACATGCTGTCAAGGAGAGCACTCTTGATAGTCTAATCACTGAGCTCCTGCTCTGGCTTTTGGATGAGAGGGTTCCCCATATGGATGATGGCAGCCAACTTCTCAAAGCCTTGAATGTCTTGATGCTAAAGATTCTGGATAATGCCGACCGCACTTCGTCCTTTGTGGTTCTTATCAATCTCTTACGTCCTTTAGATCCCTCAAGATGGCCTGCACCTCCAGCGAATGAAACGTTGGCTGCCAGAAACCAGAAGTTCTCTGATCTGGTTGTCAAATGTTTAATCAAACTTACAAAGGTTCTTCAAAGCACCATATATGATGTCGATCTGGACCACATCCTTCAAAGTATCCATTTATACCTTCAAGACTTGGGTATGGAAGAAATCAGGAGAAGAGCTGGTGCCGATGACAAACCATTGCGCATGGTGAAAACTGTTCTACATGAGCTTGTGAAGCTTCGCGGAGCTGCAATTAAAGGTCACCTTTCTATGGTTCCTATAGACATGAAGCCCCAGCCAATTATTCTTGCTTACATTGATCTTAATCTTGAGACTCTAGCGGCAGCAAGGATGTTGACATCAACTGGGTCTGGGGGCCAAACTCATTGGGGTGATTCAGCAGCTAATAATCCTTCCTCTGCTACACATTCTGCTGATGCACAACTAAAGCAAGAACTTGCTGCCATTTTCAAGAAGATTGGTGACAAGCAGACTTGCTCCATTGGTCTATATGAACTATATCGTATAACCCAACTCTACCCTAAAGTAGATATATTCTCCCAGCTGCAAAATGCCAGTGAGGCTTTTCGGACGTATATTAGAGATGGTTTAGCACAGATGGAGAAGAATGCAGCAGCTGGAAGGACACCTTCAAGTGTACCAATGCCTACTCCTCCCCCAGCTTCTCTTACCGTTTCTTCTCCTGAATTTGCACCCCTTTCCCCTGTACACACAAATTCCTTAATGGATTCAAAATCATTTAATGTGAAGAGTGAACCAACTAGCTTTAATCTTCCACCGGCATATGCTGAAGACAACAGGCTTCACAATGCCAATACTGCTAGAGGCCTGGTTGAAAACTCGTTAGTTGACCCAAGGAATGAGAGATATATGGGTGGAGTGACTAGTGGGACACTAGATGCAATTAGAGAGAGGATGAAAAGCATGCAACTAGCGGCAGCTTCTGGGAACCTGGAGTCAGAAGCTAGGCCATTAATGTATGTAAATGACAACCAAAGTCAGGGACTCTCTGGTCAGATAAATCGGGCATCAGAGAATCCCCTCCAAAGTGGGGTTCTCCCTATGGATGAAAGGGCATTATCTGGGCTTCAAGCTCGGATGGAGAGACTAAAAAGTGGGACACTTGAACCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

2000

Amino Acids

220.21

Weight (kDa)

8.2

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XMAP215_CLASP_TOG	PF21041	12 - 224	4e-59	XMAP215/Dis1/CLASP, TOG domain
XMAP215_CLASP_TOG	PF21041	298 - 499	2.2e-08	XMAP215/Dis1/CLASP, TOG domain
CLASP_N	PF12348	299 - 477	9.1e-10	CLASP N terminal
XMAP215_CLASP_TOG	PF21041	609 - 814	9e-11	XMAP215/Dis1/CLASP, TOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35630 AT2G35630
fragaria_vesca	FvH4_7g33390 FvH4_7g33390 FvH4_7g33390
malus_domestica	MD01G1232200.v1.1 MD07G1304000.v1.1
prunus_persica	Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1
pyrus_communis	pycom01g24060
rosa_chinensis	RchiOBHm_Chr1g0383361
rosa_laevigata	RLG00000026109
rosa_multiflora	Rmu_sc0007173.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277360
rosa_rugosa	Rorug01G0440800 Rorug01G0440800 Rorug01G0440900
rosa_samantha	Rh1AG466800 Rh1BG424100 Rh1CG437200 Rh1DG456800
rosa_wichuraiana	Rw1G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1004, 1808, 3027, 4065
AasI	GACNNNNNNGTC	1 cut(s)	5877
Acc16I	TGCGCA	1 cut(s)	5048
Acc36I	ACCTGC	1 cut(s)	2419
AccB1I	GGYRCC	2 cut(s)	2699, 5027
AccB7I	CCANNNNNTGG	1 cut(s)	3266
AccBSI	CCGCTC	2 cut(s)	248, 2077
AccI	GTMKAC	3 cut(s)	2059, 4130, 4448
AccII	CGCG	2 cut(s)	1096, 5088
AclI	AACGTT	1 cut(s)	4859
AcoI	YGGCCR	1 cut(s)	3825
AcuI	CTGAAG	9 cut(s)	777, 1566, 1767, 2154, 2498, 3066, 3502, 4531, 5676
AcvI	CACGTG	1 cut(s)	2546
AdeI	CACNNNGTG	1 cut(s)	1845
AfiI	CCNNNNNNNGG	8 cut(s)	2459, 3266, 3676, 4489, 4833, 5116, 5866, 5917
AflII	CTTAAG	3 cut(s)	469, 2270, 2704
AflIII	ACRYGT	2 cut(s)	3708, 3729
AgeI	ACCGGT	1 cut(s)	2791
AhlI	ACTAGT	1 cut(s)	5750
Alw21I	GWGCWC	9 cut(s)	675, 930, 1841, 2190, 2428, 2791, 4099, 4649, 4674
Alw26I	GTCTC	6 cut(s)	1571, 2260, 2838, 4306, 5171, 5965
Alw44I	GTGCAC	1 cut(s)	2424
AlwNI	CAGNNNCTG	3 cut(s)	1652, 5483, 5810
ApaLI	GTGCAC	1 cut(s)	2424
ArsI	GACNNNNNNTTYG	2 cut(s)	1577, 1609
AseI	ATTAAT	2 cut(s)	1928, 5840
AsiGI	ACCGGT	1 cut(s)	2791
Asp700I	GAANNNNTTC	4 cut(s)	3209, 3483, 3515, 3690
AspLEI	GCGC	6 cut(s)	1159, 1541, 1946, 2667, 2976, 5049
AsuC2I	CCSGG	1 cut(s)	688
AsuII	TTCGAA	1 cut(s)	1600
AsuNHI	GCTAGC	3 cut(s)	937, 3998, 4051
AvaII	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3239, 3324, 4572, 4957
AxyI	CCTNAGG	2 cut(s)	804, 2199
BaeGI	GKGCMC	2 cut(s)	2428, 3789
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BalI	TGGCCA	1 cut(s)	3827
BamHI	GGATCC	1 cut(s)	4393
BanI	GGYRCC	2 cut(s)	2699, 5027
BanII	GRGCYC	4 cut(s)	675, 930, 2600, 4674
BarI	GAAGNNNNNNTAC	2 cut(s)	1695, 1727
BauI	CACGAG	1 cut(s)	4326
BbrPI	CACGTG	1 cut(s)	2546
BbsI	GAAGAC	6 cut(s)	143, 185, 332, 1755, 2531, 5664
Bbv12I	GWGCWC	9 cut(s)	675, 930, 1841, 2190, 2428, 2791, 4099, 4649, 4674
BceAI	ACGGC	5 cut(s)	31, 576, 1871, 2952, 3296
BcgI	CGANNNNNNTGC	6 cut(s)	25, 59, 92, 126, 2484, 2518
BciVI	GTATCC	3 cut(s)	637, 3719, 4985
BclI	TGATCA	1 cut(s)	4399
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	6 cut(s)	1571, 2260, 2838, 4306, 5171, 5965
BcuI	ACTAGT	1 cut(s)	5750
BfmI	CTRYAG	8 cut(s)	789, 1563, 2306, 2466, 3587, 3852, 4008, 5124
BfoI	RGCGCY	1 cut(s)	1160
BfrI	CTTAAG	3 cut(s)	469, 2270, 2704
BfuAI	ACCTGC	1 cut(s)	2419
BfuI	GTATCC	3 cut(s)	637, 3719, 4985
BglI	GCCNNNNNGGC	2 cut(s)	315, 5426
BglII	AGATCT	3 cut(s)	716, 2980, 3490
BlpI	GCTNAGC	2 cut(s)	924, 4516
BmcAI	AGTACT	1 cut(s)	3515
Bme18I	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3239, 3324, 4572, 4957
BmrI	ACTGGG	3 cut(s)	1288, 2072, 5220
BmtI	GCTAGC	3 cut(s)	941, 4002, 4055
BmuI	ACTGGG	3 cut(s)	1288, 2072, 5220
BoxI	GACNNNNGTC	2 cut(s)	147, 2308
BpiI	GAAGAC	6 cut(s)	143, 185, 332, 1755, 2531, 5664
BpmI	CTGGAG	5 cut(s)	1478, 1595, 3819, 4830, 5840
Bpu10I	CCTNAGC	2 cut(s)	342, 3626
Bpu1102I	GCTNAGC	2 cut(s)	924, 4516
Bpu14I	TTCGAA	1 cut(s)	1600
BpuEI	CTTGAG	7 cut(s)	602, 1139, 2567, 3515, 3599, 4813, 5195
BpuMI	CCSGG	1 cut(s)	688
Bsa29I	ATCGAT	1 cut(s)	3945
BsaAI	YACGTR	1 cut(s)	2546
BsaBI	GATNNNNATC	3 cut(s)	4398, 4950, 5169
BsaJI	CCNNGG	7 cut(s)	47, 399, 1062, 1109, 1455, 1951, 5720
BsaWI	WCCGGW	3 cut(s)	2791, 3903, 4058
BsaXI	ACNNNNNCTCC	6 cut(s)	1081, 1111, 2000, 2030, 2778, 2808
Bsc4I	CCNNNNNNNGG	8 cut(s)	2459, 3266, 3676, 4489, 4833, 5116, 5866, 5917
Bse118I	RCCGGY	3 cut(s)	202, 2791, 5644
Bse21I	CCTNAGG	2 cut(s)	804, 2199
Bse3DI	GCAATG	7 cut(s)	2031, 2787, 3111, 3327, 3339, 4479, 5042
Bse8I	GATNNNNATC	3 cut(s)	4398, 4950, 5169
BseCI	ATCGAT	1 cut(s)	3945
BseDI	CCNNGG	7 cut(s)	47, 399, 1062, 1109, 1455, 1951, 5720
BseJI	GATNNNNATC	3 cut(s)	4398, 4950, 5169
BseLI	CCNNNNNNNGG	8 cut(s)	2459, 3266, 3676, 4489, 4833, 5116, 5866, 5917
BseMI	GCAATG	7 cut(s)	2031, 2787, 3111, 3327, 3339, 4479, 5042
BseRI	GAGGAG	3 cut(s)	792, 843, 5508
BseSI	GKGCMC	2 cut(s)	2428, 3789
BseYI	CCCAGC	3 cut(s)	5139, 5406, 5524
BsgI	GTGCAG	3 cut(s)	2397, 2985, 4824
Bsh1236I	CGCG	2 cut(s)	1096, 5088
Bsh1285I	CGRYCG	1 cut(s)	4777
BshNI	GGYRCC	2 cut(s)	2699, 5027
BshTI	ACCGGT	1 cut(s)	2791
BshVI	ATCGAT	1 cut(s)	3945
BsiEI	CGRYCG	1 cut(s)	4777
BsiHKAI	GWGCWC	9 cut(s)	675, 930, 1841, 2190, 2428, 2791, 4099, 4649, 4674
BsiSI	CCGG	6 cut(s)	203, 687, 2792, 3904, 4059, 5645
BslFI	GGGAC	8 cut(s)	703, 1438, 1934, 2724, 3252, 5770, 5883, 5998
BslI	CCNNNNNNNGG	8 cut(s)	2459, 3266, 3676, 4489, 4833, 5116, 5866, 5917
BsmAI	GTCTC	6 cut(s)	1571, 2260, 2838, 4306, 5171, 5965
BsmFI	GGGAC	8 cut(s)	703, 1438, 1934, 2724, 3252, 5770, 5883, 5998
BsmI	GAATGC	3 cut(s)	2814, 2873, 5479
Bsp119I	TTCGAA	1 cut(s)	1600
Bsp1407I	TGTACA	3 cut(s)	1711, 3037, 5572
Bsp1720I	GCTNAGC	2 cut(s)	924, 4516
Bsp19I	CCATGG	1 cut(s)	399
BspDI	ATCGAT	1 cut(s)	3945
BspFNI	CGCG	2 cut(s)	1096, 5088
BspHI	TCATGA	2 cut(s)	3694, 4432
BspMAI	CTGCAG	6 cut(s)	1567, 2310, 2470, 3591, 3856, 4012
BspMI	ACCTGC	1 cut(s)	2419
BspOI	GCTAGC	3 cut(s)	941, 4002, 4055
BspQI	GCTCTTC	3 cut(s)	1829, 3459, 5014
BspT104I	TTCGAA	1 cut(s)	1600
BspT107I	GGYRCC	2 cut(s)	2699, 5027
BspTI	CTTAAG	3 cut(s)	469, 2270, 2704
BsrBI	CCGCTC	2 cut(s)	248, 2077
BsrDI	GCAATG	7 cut(s)	2031, 2787, 3111, 3327, 3339, 4479, 5042
BsrFI	RCCGGY	3 cut(s)	202, 2791, 5644
BsrGI	TGTACA	3 cut(s)	1711, 3037, 5572
BssAI	RCCGGY	3 cut(s)	202, 2791, 5644
BssECI	CCNNGG	7 cut(s)	47, 399, 1062, 1109, 1455, 1951, 5720
BssNAI	GTATAC	1 cut(s)	4131
BssSI	CACGAG	1 cut(s)	4326
BssT1I	CCWWGG	3 cut(s)	399, 1062, 5720
Bst1107I	GTATAC	1 cut(s)	4131
Bst2BI	CACGAG	1 cut(s)	4326
BstAFI	CTTAAG	3 cut(s)	469, 2270, 2704
BstAPI	GCANNNNNTGC	5 cut(s)	224, 233, 1652, 3113, 3851
BstAUI	TGTACA	3 cut(s)	1711, 3037, 5572
BstBAI	YACGTR	1 cut(s)	2546
BstBI	TTCGAA	1 cut(s)	1600
BstDSI	CCRYGG	2 cut(s)	47, 399
BstEII	GGTNACC	1 cut(s)	5105
BstENI	CCTNNNNNAGG	2 cut(s)	3674, 4487
BstFNI	CGCG	2 cut(s)	1096, 5088
BstH2I	RGCGCY	1 cut(s)	1160
BstHHI	GCGC	6 cut(s)	1159, 1541, 1946, 2667, 2976, 5049
BstMAI	GTCTC	6 cut(s)	1571, 2260, 2838, 4306, 5171, 5965
BstMCI	CGRYCG	1 cut(s)	4777
BstNSI	RCATGY	6 cut(s)	1621, 3111, 3712, 3733, 4634, 5794
BstPAI	GACNNNNGTC	2 cut(s)	147, 2308
BstPI	GGTNACC	1 cut(s)	5105
BstSFI	CTRYAG	8 cut(s)	789, 1563, 2306, 2466, 3587, 3852, 4008, 5124
BstSLI	GKGCMC	2 cut(s)	2428, 3789
BstUI	CGCG	2 cut(s)	1096, 5088
BstV2I	GAAGAC	6 cut(s)	143, 185, 332, 1755, 2531, 5664
BstX2I	RGATCY	8 cut(s)	716, 1670, 2980, 3215, 3490, 3526, 4393, 4822
BstXI	CCANNNNNNTGG	2 cut(s)	2678, 4359
BstYI	RGATCY	8 cut(s)	716, 1670, 2980, 3215, 3490, 3526, 4393, 4822
BstZ17I	GTATAC	1 cut(s)	4131
Bsu15I	ATCGAT	1 cut(s)	3945
Bsu36I	CCTNAGG	2 cut(s)	804, 2199
BsuI	GTATCC	3 cut(s)	637, 3719, 4985
BsuTUI	ATCGAT	1 cut(s)	3945
BtgI	CCRYGG	2 cut(s)	47, 399
BtsI	GCAGTG	6 cut(s)	1527, 1560, 2019, 2414, 2475, 4474
BveI	ACCTGC	1 cut(s)	2419
CaiI	CAGNNNCTG	3 cut(s)	1652, 5483, 5810
CciI	TCATGA	2 cut(s)	3694, 4432
CfoI	GCGC	6 cut(s)	1159, 1541, 1946, 2667, 2976, 5049
Cfr10I	RCCGGY	3 cut(s)	202, 2791, 5644
ClaI	ATCGAT	1 cut(s)	3945
CseI	GACGC	1 cut(s)	392
CspAI	ACCGGT	1 cut(s)	2791
DraI	TTTAAA	3 cut(s)	513, 1323, 1879
DraIII	CACNNNGTG	1 cut(s)	1845
DrdI	GACNNNNNNGTC	1 cut(s)	5877
DseDI	GACNNNNNNGTC	1 cut(s)	5877
EaeI	YGGCCR	1 cut(s)	3825
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	3 cut(s)	673, 928, 4672
Eco130I	CCWWGG	3 cut(s)	399, 1062, 5720
Eco147I	AGGCCT	4 cut(s)	1441, 1636, 3395, 5694
Eco24I	GRGCYC	4 cut(s)	675, 930, 2600, 4674
Eco32I	GATATC	2 cut(s)	2089, 4078
Eco47I	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3239, 3324, 4572, 4957
Eco53kI	GAGCTC	3 cut(s)	673, 928, 4672
Eco57I	CTGAAG	9 cut(s)	777, 1566, 1767, 2154, 2498, 3066, 3502, 4531, 5676
Eco72I	CACGTG	1 cut(s)	2546
Eco81I	CCTNAGG	2 cut(s)	804, 2199
Eco91I	GGTNACC	1 cut(s)	5105
EcoICRI	GAGCTC	3 cut(s)	673, 928, 4672
EcoNI	CCTNNNNNAGG	2 cut(s)	3674, 4487
EcoO109I	RGGNCCY	3 cut(s)	1066, 1452, 4572
EcoO65I	GGTNACC	1 cut(s)	5105
EcoRI	GAATTC	1 cut(s)	2332
EcoRV	GATATC	2 cut(s)	2089, 4078
EcoT14I	CCWWGG	3 cut(s)	399, 1062, 5720
EcoT22I	ATGCAT	3 cut(s)	229, 1185, 3113
EcoT38I	GRGCYC	4 cut(s)	675, 930, 2600, 4674
ErhI	CCWWGG	3 cut(s)	399, 1062, 5720
FaqI	GGGAC	8 cut(s)	703, 1438, 1934, 2724, 3252, 5770, 5883, 5998
FauI	CCCGC	1 cut(s)	2070
FauNDI	CATATG	3 cut(s)	2859, 4707, 5650
FbaI	TGATCA	1 cut(s)	4399
FblI	GTMKAC	3 cut(s)	2059, 4130, 4448
FriOI	GRGCYC	4 cut(s)	675, 930, 2600, 4674
FspI	TGCGCA	1 cut(s)	5048
GlaI	GCGC	6 cut(s)	1158, 1540, 1945, 2666, 2975, 5048
GsaI	CCCAGC	3 cut(s)	5143, 5410, 5528
GsuI	CTGGAG	5 cut(s)	1478, 1595, 3819, 4830, 5840
HaeII	RGCGCY	1 cut(s)	1160
HapII	CCGG	6 cut(s)	203, 687, 2792, 3904, 4059, 5645
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	6 cut(s)	1159, 1541, 1946, 2667, 2976, 5049
Hin6I	GCGC	6 cut(s)	1157, 1539, 1944, 2665, 2974, 5047
HinP1I	GCGC	6 cut(s)	1157, 1539, 1944, 2665, 2974, 5047
HincII	GTYRAC	6 cut(s)	1210, 2997, 3735, 4449, 5202, 5716
HindII	GTYRAC	6 cut(s)	1210, 2997, 3735, 4449, 5202, 5716
HpaII	CCGG	6 cut(s)	203, 687, 2792, 3904, 4059, 5645
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	5 cut(s)	1752, 2545, 4813, 4859, 5438
HpySE526I	ACGT	5 cut(s)	1752, 2545, 4813, 4859, 5438
HspAI	GCGC	6 cut(s)	1157, 1539, 1944, 2665, 2974, 5047
Ksp22I	TGATCA	1 cut(s)	4399
LguI	GCTCTTC	3 cut(s)	1829, 3459, 5014
MaeII	ACGT	5 cut(s)	1752, 2545, 4813, 4859, 5438
MbiI	CCGCTC	2 cut(s)	248, 2077
MfeI	CAATTG	3 cut(s)	447, 1829, 2625
MflI	RGATCY	8 cut(s)	716, 1670, 2980, 3215, 3490, 3526, 4393, 4822
MlsI	TGGCCA	1 cut(s)	3827
MluNI	TGGCCA	1 cut(s)	3827
MmeI	TCCRAC	6 cut(s)	575, 1937, 2511, 3247, 3913, 4289
Mox20I	TGGCCA	1 cut(s)	3827
Mph1103I	ATGCAT	3 cut(s)	229, 1185, 3113
MroXI	GAANNNNTTC	4 cut(s)	3209, 3483, 3515, 3690
MscI	TGGCCA	1 cut(s)	3827
MslI	CAYNNNNRTG	6 cut(s)	895, 2024, 3332, 4598, 4710, 5235
Msp20I	TGGCCA	1 cut(s)	3827
MspA1I	CMGCKG	7 cut(s)	794, 1190, 1610, 2237, 4318, 5410, 5483
MspCI	CTTAAG	3 cut(s)	469, 2270, 2704
MspI	CCGG	6 cut(s)	203, 687, 2792, 3904, 4059, 5645
MunI	CAATTG	3 cut(s)	447, 1829, 2625
Mva1269I	GAATGC	3 cut(s)	2814, 2873, 5479
MvnI	CGCG	2 cut(s)	1096, 5088
NciI	CCSGG	1 cut(s)	688
NcoI	CCATGG	1 cut(s)	399
NdeI	CATATG	3 cut(s)	2859, 4707, 5650
NheI	GCTAGC	3 cut(s)	937, 3998, 4051
NmeAIII	GCCGAG	1 cut(s)	1029
NmuCI	GTSAC	7 cut(s)	965, 1282, 1558, 3387, 5105, 5327, 5746
NsbI	TGCGCA	1 cut(s)	5048
NsiI	ATGCAT	3 cut(s)	229, 1185, 3113
NspI	RCATGY	6 cut(s)	1621, 3111, 3712, 3733, 4634, 5794
NspV	TTCGAA	1 cut(s)	1600
PaeI	GCATGC	3 cut(s)	1621, 3111, 5794
PagI	TCATGA	2 cut(s)	3694, 4432
PceI	AGGCCT	4 cut(s)	1441, 1636, 3395, 5694
PciI	ACATGT	2 cut(s)	3708, 3729
PciSI	GCTCTTC	3 cut(s)	1829, 3459, 5014
PctI	GAATGC	3 cut(s)	2814, 2873, 5479
PdmI	GAANNNNTTC	4 cut(s)	3209, 3483, 3515, 3690
PflFI	GACNNNGTC	1 cut(s)	3739
PflMI	CCANNNNNTGG	1 cut(s)	3266
PfoI	TCCNGGA	1 cut(s)	2146
PinAI	ACCGGT	1 cut(s)	2791
PmaCI	CACGTG	1 cut(s)	2546
PmlI	CACGTG	1 cut(s)	2546
Ppu21I	YACGTR	1 cut(s)	2546
PpuMI	RGGWCCY	2 cut(s)	1452, 4572
PscI	ACATGT	2 cut(s)	3708, 3729
PshAI	GACNNNNGTC	2 cut(s)	147, 2308
PshBI	ATTAAT	2 cut(s)	1928, 5840
PsiI	TTATAA	4 cut(s)	1004, 1808, 3027, 4065
Psp124BI	GAGCTC	3 cut(s)	675, 930, 4674
Psp1406I	AACGTT	1 cut(s)	4859
Psp5II	RGGWCCY	2 cut(s)	1452, 4572
PspCI	CACGTG	1 cut(s)	2546
PspEI	GGTNACC	1 cut(s)	5105
PspFI	CCCAGC	3 cut(s)	5139, 5406, 5524
PspPPI	RGGWCCY	2 cut(s)	1452, 4572
PstI	CTGCAG	6 cut(s)	1567, 2310, 2470, 3591, 3856, 4012
PstNI	CAGNNNCTG	3 cut(s)	1652, 5483, 5810
PsuI	RGATCY	8 cut(s)	716, 1670, 2980, 3215, 3490, 3526, 4393, 4822
PsyI	GACNNNGTC	1 cut(s)	3739
PvuII	CAGCTG	6 cut(s)	1190, 1610, 2237, 4318, 5410, 5483
RseI	CAYNNNNRTG	6 cut(s)	895, 2024, 3332, 4598, 4710, 5235
SacI	GAGCTC	3 cut(s)	675, 930, 4674
SalI	GTCGAC	1 cut(s)	4447
SapI	GCTCTTC	3 cut(s)	1829, 3459, 5014
ScaI	AGTACT	1 cut(s)	3515
SfcI	CTRYAG	8 cut(s)	789, 1563, 2306, 2466, 3587, 3852, 4008, 5124
SfuI	TTCGAA	1 cut(s)	1600
SinI	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3239, 3324, 4572, 4957
SmiMI	CAYNNNNRTG	6 cut(s)	895, 2024, 3332, 4598, 4710, 5235
SpeI	ACTAGT	1 cut(s)	5750
SphI	GCATGC	3 cut(s)	1621, 3111, 5794
SseBI	AGGCCT	4 cut(s)	1441, 1636, 3395, 5694
SspI	AATATT	1 cut(s)	2220
SstI	GAGCTC	3 cut(s)	675, 930, 4674
StuI	AGGCCT	4 cut(s)	1441, 1636, 3395, 5694
StyI	CCWWGG	3 cut(s)	399, 1062, 5720
TaiI	ACGT	5 cut(s)	1755, 2548, 4816, 4862, 5441
TaqI	TCGA	8 cut(s)	102, 1268, 1600, 2491, 2504, 3945, 4448, 4950
TaqII	GACCGA	1 cut(s)	3752
TatI	WGTACW	5 cut(s)	1711, 3037, 3513, 3548, 5572
TauI	GCSGC	4 cut(s)	251, 3541, 5189, 5804
TseFI	GTSAC	7 cut(s)	965, 1282, 1558, 3387, 5105, 5327, 5746
Tsp45I	GTSAC	7 cut(s)	965, 1282, 1558, 3387, 5105, 5327, 5746
TspGWI	ACGGA	2 cut(s)	2414, 3086
Tth111I	GACNNNGTC	1 cut(s)	3739
Van91I	CCANNNNNTGG	1 cut(s)	3266
Vha464I	CTTAAG	3 cut(s)	469, 2270, 2704
VneI	GTGCAC	1 cut(s)	2424
VpaK11BI	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3239, 3324, 4572, 4957
VspI	ATTAAT	2 cut(s)	1928, 5840
XagI	CCTNNNNNAGG	2 cut(s)	3674, 4487
XceI	RCATGY	6 cut(s)	1621, 3111, 3712, 3733, 4634, 5794
XcmI	CCANNNNNNNNNTGG	2 cut(s)	103, 4712
XmiI	GTMKAC	3 cut(s)	2059, 4130, 4448
XmnI	GAANNNNTTC	4 cut(s)	3209, 3483, 3515, 3690
ZrmI	AGTACT	1 cut(s)	3515
Zsp2I	ATGCAT	3 cut(s)	229, 1185, 3113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.