Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007173.1

Orthogroup ID

OG0007772

Physical Location & Seq

Genomic Coordinates Forward (+)

37299 .. 52733

Gene Structure 15435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007173.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6240 bp

atgtcgtcggaggaagagaagctgttgaaggaggcgaagaaattgccgtgggatgatcggcttttccataagaactggaaggtgcggaatgaagccaacatcgacttggctgccctatgcgactccatcaccgatccaaaggactctcgtctccgtgaatttggttcgttttttaggaagactctggcggatgccaattcgccggtacaagagaaggcacttgatgcattgattgcttatttacgagcggctgatgctgatgctggaaggtatggcaaggaagtttgcgataccatcgttgcgaaatgcctcaccggcaggccgaagacggtggagaaggctcaggcttcctttatgctttgggtcgaattggaggctgtggatgctttcttggatgccatggagaaagcaataaaagccaaagttgccaaagctgttgtgcctgcaattgatgtcatgtttcaagccttaagtgaatttggctcaaaaattattcctccgaaaaggattttaaagatgcttcctgaactatttgaccatcaagatcaaaatgttcgtgcatcttctaaaggacttactcttgagctttgccgttggataggaaaagaccctgtaaaatccatattgtttgaaaaaatgagggatacgatgaaaaaagaattggagtctgagctcgtcaatgttaccgggacagccaggccatctcgcaaaatcagatctgagcaagacaaggagccagaaagggaagttgtatccgaagttgttggtcctggtctttctgaggaatctacagtggatgctcctcaggaaatagatgaatatgagcttgttgatcctgttgatatattgactcctctggataagtctggattttgggatggagtgaaagcatccaaatggtcagagcgaaaggaggctgttgctgagctcaccaagctagcttcaaccaaaagaatagctcctggtgacttcaccgaaatatgtaggacattaaagaagcttataacagatgtgaacatagctgttgcagttgaagctatccaagctctcggcaatcttgccaagggcctaagaactcacttctctgggagttcgcgttttctattgccagggttacttgagaaattgaaagagaaaaagccaactatgagtgaggcgcttacccagactcttcaagctatgcatacagctggctgcttaaatcttgttgacattgttgaagatgttaagacagcagttaaaaataaagtacctcttgtacgatcatcgactttgaactgggtgacattctgtattgaaacaagtaacaaggctgttgttttaaagttacacaaggattatgttcctatatttatggaggtcagtgcatctttacttgagtgtcttgctattatcagaattaactatgttaagacagcagttaaaaataaagtacctcttgtacgatcatcgactttgaactgggtgacattctgtattgaaacaagtaacaaggctgttgttttaaagttacacaaggattatgttcctatatttatggagtgcctcaatgatggaaccccagaagtgagggatgcagccttttcagctctgacagcagtagctaagtcggttggtatgaggcctttggagaggtccctggagaaacttgatgatgtcagaagaaagaagctttctgaaatgattatgggttccgagggtggtacatccactgctgcaagcgcagttcaaagctctggtgtcactgcagcctctctggagacttcagacagttcatttgttcgaaagtcagctgcaagcatgcttagtgggaagaggcctgttcaggcagttcctgctaaacaaaaagtgggatctggaaaatctggtggcagtaagaaaggggaagtaactgtacagtcaaaagcttccaagtcagttgaaccacctgaagacgttgagccagcagaaatgagtcttgaagaaattgaaagcagattaggttctcttataaaagcagataccatctctcaattgaagagcactgtgtggaaagaacggcttgaagccatatcctcatttaaacaagaagtggaagctttacaggacatcaaccagtctgttgagatattaattcgtttactttgcgctgtccctggttggagtgaaaaaaatgttcaggttcaacaacaggtaattgaagttattacctacatagcctccactgcaatgaaatttccgaagaaatgtgtggtactttgtctactgggtataagcgagcgggtagcagatatcaagactcggactcatgccatgaagtgtctgacttctttctctgaagccataggtccaggatttatttttgaaagactttacaaaataatgaaagagcacaagaaccctaaggttcttagcgagggaatattgtggatggtttcagctgttgaagattttggtgtctcacatttgaagcttaaggatttgattgatttttgcaaagatactggactgcagtccagtgctgctgctactaggaattctactataaaacttttgggcgttacgcataagtttgttggtccagatattaaaggatttcttacggatgtcaaacctgcactgcttagtgcactggaagcagatgcactggaagcagagtatgaaaaaaatccatttgagggtgctgcagtggttctgaagagaaatgttcgagcaacagaatcgacttcatcaatttctgctagtgggttggacagtcttccacgtgaagatattagtggaaaaatcacacctactctgctcaagaatttggagagccctgattggaaggttcgcttggagtcaattgatgctgtaaataaaattttagaagaggctaataagcgtatccagccaactggaactgtggagttatttggtgccttaaggggacgattatatgacagcaataagaacctagttgcagcaaccttgacagctattggtaatgttgcatctgcaatgggagcaccggttgaaaaggcgagcaagggcattctgtcagatattttgaaatgtattggagacaataagaagcatatgagagaatgcactttagctactttagactcatggctctctgctgtgaatcttgataaaatggttccttatatcacggcagctataacagaaaccaagcttggtgcagaagggcgcaaagatctttttgactggttgacgaggcagctttctctgctaagtgattataatgatgctgtacatcttctgaaaccagcttcctctgctatgacggataaatcttcagatgttcgtaaagcagcagaggcatgcattgctgaaattttgagagttagtggacatgaagcagttgagaaaattatgaaagatattcaagggccagctttagctcttgttcttgaacggttgaagcctttcggatctttacaagcaatatcaacgggaccaacatccaaaagcatctcaaaggttggaaaatctgcttccaatggagtgttaaagcctggaacgaaagccgtatcttcaaggaccattgcaatgaagggatcaaggccaggttcaatactgtctgtccaagatatagctgtccagtcacaggccttgctaaatgttaaagattcagttaaggtggatagggagagaatagtggttaagaggtttaagtttgaagagccacgaatagaacagattcaagatcttgagaatgatatgatgaagtacttcagagaggatctgcataggcgacttcttagtacagattttaagaagcaagtagatgggcttgagatgctgcagaaggctcttccaactataagaaaggaaattattgaagttctggatatactgcttaggtggtttgttttacaattttgtaaatcaaacacaacatccctgttaaaggtgctggaatttcttcatgacctttttgacatgtttagggatgagggatacatgttgaccgagtcagaagcagcaattcttcttccatgcctaatggagaagcttgggcacaatggttctggagtacgaaaagaaatgaaggagctggccagacaaattgttcaggcatatactgcagcaaagagtttaccttatattttggagggattgcgttctaagaactaccggacacgaattgagtgtgctgaacttgttggatatttgatcgatcatcatggagctgagataagtggacaattaaaatctttgcaaattgttgcaagcttgactgcagaaagagagaatgaaattaggaaggctgctctaaatacgctagcttccggttataagcttcttggggaggacatatggagatatgttgggaagctaacaggtgctcagaaaagcttgatagaagagagatttaagtatacggttaaagatatggagaaaaacaaggaaggaaagcctggtgaagctagggcttctttaaggcgttctgtcagggaaattgggtctgatgtagcagagcagagtggggaggttgcacgatctgttgctgctccaacacttgctaggggcaattatggtcattctgagattcacagggagagacagctgttgcctcgtggatttgctgctgttaatggcccaacagactggaatgaagctttggagatcatttcttctgaggatcctgatcagtcggttgaaggaatgaaagttgtgtgtcatgagttggcacagtcgaccagtgatccagaaggcagtgcaatggatgacctagtgaaggatgcagataaacttgtttcgtgcttagcaaagaaggtagcaacgacttttgacttcagtttgacaggagcttcatctaggtcctgtaaatatgtcctgaacactctcatgcagacatttcaaaataaaagatttgcacatgctgtcaaggagagcactcttgatagtctaatcactgagctcctgctctggcttttggatgagagggttccccatatggatgatggcagccaacttctcaaagccttgaatgtcttgatgctaaagattctggataatgccgaccgcacttcatcctttgtggttcttatcaatctcttacgtcctttagatccctcaagatggcctgcacctccagcgaatgaaacgttggctgccagaaaccagaagttctctgatctggttgtcaaatgtttaatcaaacttacaaaggttcttcaaagcaccatatatgatgtcgatctggaccacatccttcaaagtatccatttataccttcaagacttgggtatggaagaaatcaggagaagagctggtgccgatgacaaaccattgcgcatggtgaaaactgttctacatgagcttgtgaagcttcgcggagctgcaattaaaggtcacctttctatggttcctatagacatgaagccccagccaattattcttgcttacattgatcttaatcttgagactctagcggcagcaaggatgttgacatcaactgggtctgggggccaaactcattggggtgattcagcagctaataatccttcctctgctacacattctgctgatgcacaactaaagcaagaacttgctgccattttcaagaagattggtgacaagcagacttgctccattggtctatatgaactatatcgtataacccaactctaccctaaagtagatatattctcccagctccaaaatgccagtgaggcttttcggacgtatattagagatggtttagcacagatggagaagaatgcagcggctggaaggacaccttcaagtgttccaatgcctactcctcccccggcttctcttaccgtttcttctcctgaatttgcacccctttcccctgtacacacaaattccttaatggattcaaaatcatttaatgtgaagagtgaaccaactagctttagtcttccaccggcatatgctgaagacaacaggcttcacaatgccaatactgctagaggcctggttgaaaactcgttagttgacccaaggaatgagagatatatgggtggagtgactagtgggacactagatgcaattagagagaggatgaaaagcatgcaactagcggcagcttctgggaacctggagtcagaagctaggccattaatgtatgtaaatgacaaccaaagtcagggactctctggtcagataaatcgggcaacagagaatcccctccaaagtggggttctccctatggatgaaagggcattatctgggcttcaagctcggatggagagactaaaaagtgggacacttgaacccctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

2079

Amino Acids

229.04

Weight (kDa)

8.29

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35630 AT2G35630
fragaria_vesca	FvH4_7g33390 FvH4_7g33390 FvH4_7g33390
malus_domestica	MD01G1232200.v1.1 MD07G1304000.v1.1
prunus_persica	Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1
pyrus_communis	pycom01g24060
rosa_chinensis	RchiOBHm_Chr1g0383361
rosa_laevigata	RLG00000026109
rosa_multiflora	Rmu_sc0007173.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277360
rosa_rugosa	Rorug01G0440800 Rorug01G0440800 Rorug01G0440900
rosa_samantha	Rh1AG466800 Rh1BG424100 Rh1CG437200 Rh1DG456800
rosa_wichuraiana	Rw1G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1004, 1991, 3225, 4284
AasI	GACNNNNNNGTC	1 cut(s)	6114
Acc16I	TGCGCA	1 cut(s)	5285
Acc36I	ACCTGC	1 cut(s)	2602
AccB1I	GGYRCC	2 cut(s)	2897, 5264
AccBSI	CCGCTC	2 cut(s)	248, 2260
AccI	GTMKAC	3 cut(s)	2242, 4367, 4685
AccII	CGCG	2 cut(s)	1096, 5325
AciI	CCGC	9 cut(s)	85, 188, 248, 2260, 5014, 5325, 5423, 5717, 6038
AclI	AACGTT	1 cut(s)	5096
AcoI	YGGCCR	1 cut(s)	4044
AcuI	CTGAAG	8 cut(s)	1749, 1950, 2337, 2696, 3264, 3703, 4768, 5913
AcvI	CACGTG	1 cut(s)	2744
AdeI	CACNNNGTG	1 cut(s)	2028
AfiI	CCNNNNNNNGG	8 cut(s)	2657, 3592, 3895, 4726, 5070, 5353, 6103, 6154
AflII	CTTAAG	3 cut(s)	469, 2453, 2902
AflIII	ACRYGT	2 cut(s)	3927, 3948
AgeI	ACCGGT	1 cut(s)	2989
AhlI	ACTAGT	1 cut(s)	5987
Alw21I	GWGCWC	9 cut(s)	675, 930, 2024, 2373, 2611, 2989, 4336, 4886, 4911
Alw26I	GTCTC	7 cut(s)	155, 1754, 2443, 3036, 4543, 5408, 6202
Alw44I	GTGCAC	1 cut(s)	2607
AlwNI	CAGNNNCTG	3 cut(s)	1835, 5720, 6047
ApaLI	GTGCAC	1 cut(s)	2607
ArsI	GACNNNNNNTTYG	2 cut(s)	1760, 1792
AseI	ATTAAT	2 cut(s)	2111, 6077
AsiGI	ACCGGT	1 cut(s)	2989
Asp700I	GAANNNNTTC	4 cut(s)	3410, 3684, 3716, 3909
AspLEI	GCGC	5 cut(s)	1159, 1724, 2129, 3174, 5286
AsuC2I	CCSGG	2 cut(s)	688, 5762
AsuII	TTCGAA	1 cut(s)	1783
AsuNHI	GCTAGC	2 cut(s)	937, 4270
AvaII	GGWCC	8 cut(s)	767, 1635, 2327, 2558, 3440, 3525, 4809, 5194
AxyI	CCTNAGG	2 cut(s)	804, 2382
BaeGI	GKGCMC	2 cut(s)	2611, 4008
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BalI	TGGCCA	1 cut(s)	4046
BamHI	GGATCC	1 cut(s)	4630
BanI	GGYRCC	2 cut(s)	2897, 5264
BanII	GRGCYC	4 cut(s)	675, 930, 2798, 4911
BarI	GAAGNNNNNNTAC	2 cut(s)	1878, 1910
BauI	CACGAG	1 cut(s)	4563
BbrPI	CACGTG	1 cut(s)	2744
BbsI	GAAGAC	6 cut(s)	185, 332, 1938, 2729, 5867, 5901
Bbv12I	GWGCWC	9 cut(s)	675, 930, 2024, 2373, 2611, 2989, 4336, 4886, 4911
BceAI	ACGGC	5 cut(s)	31, 576, 2054, 3150, 3497
BcgI	CGANNNNNNTGC	6 cut(s)	25, 59, 92, 126, 2682, 2716
BciVI	GTATCC	5 cut(s)	637, 763, 2876, 3938, 5222
BclI	TGATCA	1 cut(s)	4636
BcnI	CCSGG	2 cut(s)	688, 5762
BcoDI	GTCTC	7 cut(s)	155, 1754, 2443, 3036, 4543, 5408, 6202
BcuI	ACTAGT	1 cut(s)	5987
BfmI	CTRYAG	8 cut(s)	789, 1746, 2489, 2664, 3788, 4071, 4227, 5361
BfoI	RGCGCY	1 cut(s)	1160
BfrI	CTTAAG	3 cut(s)	469, 2453, 2902
BfuAI	ACCTGC	1 cut(s)	2602
BfuI	GTATCC	5 cut(s)	637, 763, 2876, 3938, 5222
BglI	GCCNNNNNGGC	2 cut(s)	315, 5663
BglII	AGATCT	3 cut(s)	716, 3178, 3691
BlpI	GCTNAGC	2 cut(s)	924, 4753
BmcAI	AGTACT	1 cut(s)	3716
Bme18I	GGWCC	8 cut(s)	767, 1635, 2327, 2558, 3440, 3525, 4809, 5194
BmrI	ACTGGG	4 cut(s)	1288, 1471, 2255, 5457
BmtI	GCTAGC	2 cut(s)	941, 4274
BmuI	ACTGGG	4 cut(s)	1288, 1471, 2255, 5457
BoxI	GACNNNNGTC	2 cut(s)	147, 2491
BpiI	GAAGAC	6 cut(s)	185, 332, 1938, 2729, 5867, 5901
BpmI	CTGGAG	5 cut(s)	1661, 1778, 4038, 5067, 6077
Bpu10I	CCTNAGC	2 cut(s)	342, 3845
Bpu1102I	GCTNAGC	2 cut(s)	924, 4753
Bpu14I	TTCGAA	1 cut(s)	1783
BpuEI	CTTGAG	8 cut(s)	602, 1139, 1397, 2765, 3716, 3800, 5050, 5432
BpuMI	CCSGG	2 cut(s)	688, 5762
Bsa29I	ATCGAT	1 cut(s)	4164
BsaAI	YACGTR	1 cut(s)	2744
BsaBI	GATNNNNATC	3 cut(s)	4635, 5187, 5406
BsaJI	CCNNGG	9 cut(s)	47, 399, 1062, 1109, 1638, 1695, 2134, 5760, 5957
BsaWI	WCCGGW	3 cut(s)	2989, 4122, 4277
BsaXI	ACNNNNNCTCC	6 cut(s)	1081, 1111, 2183, 2213, 2976, 3006
Bsc4I	CCNNNNNNNGG	8 cut(s)	2657, 3592, 3895, 4726, 5070, 5353, 6103, 6154
Bse118I	RCCGGY	4 cut(s)	202, 314, 2989, 5881
Bse21I	CCTNAGG	2 cut(s)	804, 2382
Bse3DI	GCAATG	7 cut(s)	2214, 2985, 3309, 3528, 3540, 4716, 5279
Bse8I	GATNNNNATC	3 cut(s)	4635, 5187, 5406
BseCI	ATCGAT	1 cut(s)	4164
BseDI	CCNNGG	9 cut(s)	47, 399, 1062, 1109, 1638, 1695, 2134, 5760, 5957
BseJI	GATNNNNATC	3 cut(s)	4635, 5187, 5406
BseLI	CCNNNNNNNGG	8 cut(s)	2657, 3592, 3895, 4726, 5070, 5353, 6103, 6154
BseMI	GCAATG	7 cut(s)	2214, 2985, 3309, 3528, 3540, 4716, 5279
BseRI	GAGGAG	3 cut(s)	792, 843, 5745
BseSI	GKGCMC	2 cut(s)	2611, 4008
BseYI	CCCAGC	2 cut(s)	5376, 5643
BsgI	GTGCAG	3 cut(s)	2580, 3183, 5061
Bsh1236I	CGCG	2 cut(s)	1096, 5325
Bsh1285I	CGRYCG	1 cut(s)	5014
BshNI	GGYRCC	2 cut(s)	2897, 5264
BshTI	ACCGGT	1 cut(s)	2989
BshVI	ATCGAT	1 cut(s)	4164
BsiEI	CGRYCG	1 cut(s)	5014
BsiHKAI	GWGCWC	9 cut(s)	675, 930, 2024, 2373, 2611, 2989, 4336, 4886, 4911
BsiSI	CCGG	8 cut(s)	203, 315, 687, 2990, 4123, 4278, 5762, 5882
BslFI	GGGAC	8 cut(s)	703, 1621, 2117, 2922, 3453, 6007, 6120, 6235
BslI	CCNNNNNNNGG	8 cut(s)	2657, 3592, 3895, 4726, 5070, 5353, 6103, 6154
BsmAI	GTCTC	7 cut(s)	155, 1754, 2443, 3036, 4543, 5408, 6202
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	8 cut(s)	703, 1621, 2117, 2922, 3453, 6007, 6120, 6235
BsmI	GAATGC	3 cut(s)	3012, 3071, 5716
Bsp119I	TTCGAA	1 cut(s)	1783
Bsp1407I	TGTACA	3 cut(s)	1894, 3235, 5809
Bsp1720I	GCTNAGC	2 cut(s)	924, 4753
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	9 cut(s)	85, 188, 248, 2260, 5014, 5325, 5423, 5717, 6038
BspDI	ATCGAT	1 cut(s)	4164
BspFNI	CGCG	2 cut(s)	1096, 5325
BspHI	TCATGA	2 cut(s)	3913, 4669
BspMAI	CTGCAG	6 cut(s)	1750, 2493, 2668, 3792, 4075, 4231
BspMI	ACCTGC	1 cut(s)	2602
BspOI	GCTAGC	2 cut(s)	941, 4274
BspQI	GCTCTTC	4 cut(s)	2012, 3660, 3804, 5251
BspT104I	TTCGAA	1 cut(s)	1783
BspT107I	GGYRCC	2 cut(s)	2897, 5264
BspTI	CTTAAG	3 cut(s)	469, 2453, 2902
BsrBI	CCGCTC	2 cut(s)	248, 2260
BsrDI	GCAATG	7 cut(s)	2214, 2985, 3309, 3528, 3540, 4716, 5279
BsrFI	RCCGGY	4 cut(s)	202, 314, 2989, 5881
BsrGI	TGTACA	3 cut(s)	1894, 3235, 5809
BssAI	RCCGGY	4 cut(s)	202, 314, 2989, 5881
BssECI	CCNNGG	9 cut(s)	47, 399, 1062, 1109, 1638, 1695, 2134, 5760, 5957
BssNAI	GTATAC	1 cut(s)	4368
BssSI	CACGAG	1 cut(s)	4563
BssT1I	CCWWGG	3 cut(s)	399, 1062, 5957
Bst1107I	GTATAC	1 cut(s)	4368
Bst2BI	CACGAG	1 cut(s)	4563
BstAFI	CTTAAG	3 cut(s)	469, 2453, 2902
BstAPI	GCANNNNNTGC	5 cut(s)	224, 233, 1835, 3311, 4070
BstAUI	TGTACA	3 cut(s)	1894, 3235, 5809
BstBAI	YACGTR	1 cut(s)	2744
BstBI	TTCGAA	1 cut(s)	1783
BstDSI	CCRYGG	2 cut(s)	47, 399
BstEII	GGTNACC	1 cut(s)	5342
BstENI	CCTNNNNNAGG	2 cut(s)	3893, 4724
BstFNI	CGCG	2 cut(s)	1096, 5325
BstH2I	RGCGCY	1 cut(s)	1160
BstHHI	GCGC	5 cut(s)	1159, 1724, 2129, 3174, 5286
BstMAI	GTCTC	7 cut(s)	155, 1754, 2443, 3036, 4543, 5408, 6202
BstMCI	CGRYCG	1 cut(s)	5014
BstNSI	RCATGY	6 cut(s)	1804, 3309, 3931, 3952, 4871, 6031
BstPAI	GACNNNNGTC	2 cut(s)	147, 2491
BstPI	GGTNACC	1 cut(s)	5342
BstSFI	CTRYAG	8 cut(s)	789, 1746, 2489, 2664, 3788, 4071, 4227, 5361
BstSLI	GKGCMC	2 cut(s)	2611, 4008
BstUI	CGCG	2 cut(s)	1096, 5325
BstV2I	GAAGAC	6 cut(s)	185, 332, 1938, 2729, 5867, 5901
BstX2I	RGATCY	8 cut(s)	716, 1853, 3178, 3416, 3691, 3727, 4630, 5059
BstXI	CCANNNNNNTGG	2 cut(s)	2876, 4596
BstYI	RGATCY	8 cut(s)	716, 1853, 3178, 3416, 3691, 3727, 4630, 5059
BstZ17I	GTATAC	1 cut(s)	4368
Bsu15I	ATCGAT	1 cut(s)	4164
Bsu36I	CCTNAGG	2 cut(s)	804, 2382
BsuI	GTATCC	5 cut(s)	637, 763, 2876, 3938, 5222
BsuTUI	ATCGAT	1 cut(s)	4164
BtgI	CCRYGG	2 cut(s)	47, 399
BtsI	GCAGTG	6 cut(s)	1710, 1743, 2202, 2597, 2673, 4711
BveI	ACCTGC	1 cut(s)	2602
CaiI	CAGNNNCTG	3 cut(s)	1835, 5720, 6047
CciI	TCATGA	2 cut(s)	3913, 4669
CfoI	GCGC	5 cut(s)	1159, 1724, 2129, 3174, 5286
Cfr10I	RCCGGY	4 cut(s)	202, 314, 2989, 5881
ClaI	ATCGAT	1 cut(s)	4164
CspAI	ACCGGT	1 cut(s)	2989
DraI	TTTAAA	4 cut(s)	513, 1323, 1506, 2062
DraIII	CACNNNGTG	1 cut(s)	2028
DrdI	GACNNNNNNGTC	1 cut(s)	6114
DseDI	GACNNNNNNGTC	1 cut(s)	6114
EaeI	YGGCCR	1 cut(s)	4044
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	3 cut(s)	673, 928, 4909
Eco130I	CCWWGG	3 cut(s)	399, 1062, 5957
Eco147I	AGGCCT	4 cut(s)	1624, 1819, 3596, 5931
Eco24I	GRGCYC	4 cut(s)	675, 930, 2798, 4911
Eco32I	GATATC	1 cut(s)	2272
Eco47I	GGWCC	8 cut(s)	767, 1635, 2327, 2558, 3440, 3525, 4809, 5194
Eco53kI	GAGCTC	3 cut(s)	673, 928, 4909
Eco57I	CTGAAG	8 cut(s)	1749, 1950, 2337, 2696, 3264, 3703, 4768, 5913
Eco72I	CACGTG	1 cut(s)	2744
Eco81I	CCTNAGG	2 cut(s)	804, 2382
Eco91I	GGTNACC	1 cut(s)	5342
EcoICRI	GAGCTC	3 cut(s)	673, 928, 4909
EcoNI	CCTNNNNNAGG	2 cut(s)	3893, 4724
EcoO109I	RGGNCCY	3 cut(s)	1066, 1635, 4809
EcoO65I	GGTNACC	1 cut(s)	5342
EcoRI	GAATTC	1 cut(s)	2515
EcoRV	GATATC	1 cut(s)	2272
EcoT14I	CCWWGG	3 cut(s)	399, 1062, 5957
EcoT22I	ATGCAT	3 cut(s)	229, 1185, 3311
EcoT38I	GRGCYC	4 cut(s)	675, 930, 2798, 4911
ErhI	CCWWGG	3 cut(s)	399, 1062, 5957
Esp3I	CGTCTC	1 cut(s)	155
FaqI	GGGAC	8 cut(s)	703, 1621, 2117, 2922, 3453, 6007, 6120, 6235
FauI	CCCGC	1 cut(s)	2253
FauNDI	CATATG	4 cut(s)	3057, 4304, 4944, 5887
FbaI	TGATCA	1 cut(s)	4636
FblI	GTMKAC	3 cut(s)	2242, 4367, 4685
FriOI	GRGCYC	4 cut(s)	675, 930, 2798, 4911
FspI	TGCGCA	1 cut(s)	5285
GlaI	GCGC	5 cut(s)	1158, 1723, 2128, 3173, 5285
GsaI	CCCAGC	2 cut(s)	5380, 5647
GsuI	CTGGAG	5 cut(s)	1661, 1778, 4038, 5067, 6077
HaeII	RGCGCY	1 cut(s)	1160
HapII	CCGG	8 cut(s)	203, 315, 687, 2990, 4123, 4278, 5762, 5882
HhaI	GCGC	5 cut(s)	1159, 1724, 2129, 3174, 5286
Hin6I	GCGC	5 cut(s)	1157, 1722, 2127, 3172, 5284
HinP1I	GCGC	5 cut(s)	1157, 1722, 2127, 3172, 5284
HincII	GTYRAC	6 cut(s)	1210, 3195, 3954, 4686, 5439, 5953
HindII	GTYRAC	6 cut(s)	1210, 3195, 3954, 4686, 5439, 5953
HpaII	CCGG	8 cut(s)	203, 315, 687, 2990, 4123, 4278, 5762, 5882
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	5 cut(s)	1935, 2743, 5050, 5096, 5675
HpySE526I	ACGT	5 cut(s)	1935, 2743, 5050, 5096, 5675
HspAI	GCGC	5 cut(s)	1157, 1722, 2127, 3172, 5284
Ksp22I	TGATCA	1 cut(s)	4636
LguI	GCTCTTC	4 cut(s)	2012, 3660, 3804, 5251
MaeII	ACGT	5 cut(s)	1935, 2743, 5050, 5096, 5675
MbiI	CCGCTC	2 cut(s)	248, 2260
MfeI	CAATTG	3 cut(s)	447, 2012, 2823
MflI	RGATCY	8 cut(s)	716, 1853, 3178, 3416, 3691, 3727, 4630, 5059
MlsI	TGGCCA	1 cut(s)	4046
MluNI	TGGCCA	1 cut(s)	4046
MmeI	TCCRAC	7 cut(s)	575, 2120, 2709, 3448, 3827, 4132, 4526
Mox20I	TGGCCA	1 cut(s)	4046
Mph1103I	ATGCAT	3 cut(s)	229, 1185, 3311
MroXI	GAANNNNTTC	4 cut(s)	3410, 3684, 3716, 3909
MscI	TGGCCA	1 cut(s)	4046
MslI	CAYNNNNRTG	6 cut(s)	895, 2207, 3533, 4835, 4947, 5472
Msp20I	TGGCCA	1 cut(s)	4046
MspA1I	CMGCKG	5 cut(s)	1190, 1793, 2420, 4555, 5717
MspCI	CTTAAG	3 cut(s)	469, 2453, 2902
MspI	CCGG	8 cut(s)	203, 315, 687, 2990, 4123, 4278, 5762, 5882
MunI	CAATTG	3 cut(s)	447, 2012, 2823
Mva1269I	GAATGC	3 cut(s)	3012, 3071, 5716
MvnI	CGCG	2 cut(s)	1096, 5325
NciI	CCSGG	2 cut(s)	688, 5762
NcoI	CCATGG	1 cut(s)	399
NdeI	CATATG	4 cut(s)	3057, 4304, 4944, 5887
NheI	GCTAGC	2 cut(s)	937, 4270
NmeAIII	GCCGAG	1 cut(s)	1029
NmuCI	GTSAC	8 cut(s)	965, 1282, 1465, 1741, 3588, 5342, 5564, 5983
NsbI	TGCGCA	1 cut(s)	5285
NsiI	ATGCAT	3 cut(s)	229, 1185, 3311
NspI	RCATGY	6 cut(s)	1804, 3309, 3931, 3952, 4871, 6031
NspV	TTCGAA	1 cut(s)	1783
PaeI	GCATGC	3 cut(s)	1804, 3309, 6031
PagI	TCATGA	2 cut(s)	3913, 4669
PceI	AGGCCT	4 cut(s)	1624, 1819, 3596, 5931
PciI	ACATGT	2 cut(s)	3927, 3948
PciSI	GCTCTTC	4 cut(s)	2012, 3660, 3804, 5251
PctI	GAATGC	3 cut(s)	3012, 3071, 5716
PdmI	GAANNNNTTC	4 cut(s)	3410, 3684, 3716, 3909
PflFI	GACNNNGTC	1 cut(s)	3958
PfoI	TCCNGGA	1 cut(s)	2329
PinAI	ACCGGT	1 cut(s)	2989
PmaCI	CACGTG	1 cut(s)	2744
PmlI	CACGTG	1 cut(s)	2744
Ppu21I	YACGTR	1 cut(s)	2744
PpuMI	RGGWCCY	2 cut(s)	1635, 4809
PscI	ACATGT	2 cut(s)	3927, 3948
PshAI	GACNNNNGTC	2 cut(s)	147, 2491
PshBI	ATTAAT	2 cut(s)	2111, 6077
PsiI	TTATAA	4 cut(s)	1004, 1991, 3225, 4284
Psp124BI	GAGCTC	3 cut(s)	675, 930, 4911
Psp1406I	AACGTT	1 cut(s)	5096
Psp5II	RGGWCCY	2 cut(s)	1635, 4809
PspCI	CACGTG	1 cut(s)	2744
PspEI	GGTNACC	1 cut(s)	5342
PspFI	CCCAGC	2 cut(s)	5376, 5643
PspPPI	RGGWCCY	2 cut(s)	1635, 4809
PstI	CTGCAG	6 cut(s)	1750, 2493, 2668, 3792, 4075, 4231
PstNI	CAGNNNCTG	3 cut(s)	1835, 5720, 6047
PsuI	RGATCY	8 cut(s)	716, 1853, 3178, 3416, 3691, 3727, 4630, 5059
PsyI	GACNNNGTC	1 cut(s)	3958
PvuII	CAGCTG	4 cut(s)	1190, 1793, 2420, 4555
RseI	CAYNNNNRTG	6 cut(s)	895, 2207, 3533, 4835, 4947, 5472
SacI	GAGCTC	3 cut(s)	675, 930, 4911
SalI	GTCGAC	1 cut(s)	4684
SapI	GCTCTTC	4 cut(s)	2012, 3660, 3804, 5251
ScaI	AGTACT	1 cut(s)	3716
SfcI	CTRYAG	8 cut(s)	789, 1746, 2489, 2664, 3788, 4071, 4227, 5361
SfuI	TTCGAA	1 cut(s)	1783
SinI	GGWCC	8 cut(s)	767, 1635, 2327, 2558, 3440, 3525, 4809, 5194
SmiMI	CAYNNNNRTG	6 cut(s)	895, 2207, 3533, 4835, 4947, 5472
SpeI	ACTAGT	1 cut(s)	5987
SphI	GCATGC	3 cut(s)	1804, 3309, 6031
SseBI	AGGCCT	4 cut(s)	1624, 1819, 3596, 5931
SsiI	CCGC	9 cut(s)	85, 188, 248, 2260, 5014, 5325, 5423, 5717, 6038
SspI	AATATT	1 cut(s)	2403
SstI	GAGCTC	3 cut(s)	675, 930, 4911
StuI	AGGCCT	4 cut(s)	1624, 1819, 3596, 5931
StyI	CCWWGG	3 cut(s)	399, 1062, 5957
TaiI	ACGT	5 cut(s)	1938, 2746, 5053, 5099, 5678
TaqII	GACCGA	1 cut(s)	3971
TatI	WGTACW	5 cut(s)	1894, 3235, 3714, 3749, 5809
TauI	GCSGC	4 cut(s)	251, 5426, 5720, 6041
TseFI	GTSAC	8 cut(s)	965, 1282, 1465, 1741, 3588, 5342, 5564, 5983
Tsp45I	GTSAC	8 cut(s)	965, 1282, 1465, 1741, 3588, 5342, 5564, 5983
TspGWI	ACGGA	3 cut(s)	143, 2597, 3284
Tth111I	GACNNNGTC	1 cut(s)	3958
Vha464I	CTTAAG	3 cut(s)	469, 2453, 2902
VneI	GTGCAC	1 cut(s)	2607
VpaK11BI	GGWCC	8 cut(s)	767, 1635, 2327, 2558, 3440, 3525, 4809, 5194
VspI	ATTAAT	2 cut(s)	2111, 6077
XagI	CCTNNNNNAGG	2 cut(s)	3893, 4724
XceI	RCATGY	6 cut(s)	1804, 3309, 3931, 3952, 4871, 6031
XcmI	CCANNNNNNNNNTGG	2 cut(s)	103, 4949
XmiI	GTMKAC	3 cut(s)	2242, 4367, 4685
XmnI	GAANNNNTTC	4 cut(s)	3410, 3684, 3716, 3909
ZrmI	AGTACT	1 cut(s)	3716
Zsp2I	ATGCAT	3 cut(s)	229, 1185, 3311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.