Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007772

Physical Location & Seq

Genomic Coordinates Forward (+)

806413 .. 821730

Gene Structure 15318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6081 bp

ATGTCGTCGGAGGAAGAGAAGCTGTTGAAGGAGGCGAAGAAATTGCCGTGGGATGATCGGCTTTTCCATAAGAACTGGAAGGTGCGGAATGAAGCCAACATCGACTTGGCTGCCCTATGCGACTCCATCACCGATCCAAAGGACTCTCGTCTTCGTGAATTCGGTTCCTTTTTTAGGAAGACTCTGGCGGATGCCAATTCGCCGGTACAAGAGAAGGCACTTGATGCATTGATTGCTTATTTACGAGCGGCTGATGCTGATGCTGGAAGGTATGGCAAGGAAGTTTGCGATACCATCGTTGCGAAATGCCTCACCGGCAGGCCGAAGACGGTGGAGAAGGCTCAGGCTTCCTTTATGCTTTGGGTTGAATTGGAGGCTGTGGACGCTTTCTTGTTGTTTCTTAATGTTGTTACTCTGGATGCCATGGAGAAAGCAATAAAAGCCAAAGTTGCCAAAGCTGTTGTGCCTGCAATTGATGTCATGTTTCAAGCCTTAAGTGAATTTGGCTCGAAAATTATTCCTCCGAAAAAAAGGATTTTAAAGATGCTTCCTGAACTATTTGACCATCAAGATCAAAATGTTCGTGCATCTTCTAAAGGACTTACTCTTGAGCTTTGCCGTTGGATAGGAAAAGACCCTGTAAAATCCATATTGTTTGAAAAAATGAGGGATACGATGAAAAAAGAATTGGAGTCTGAGCTCGTCAATGTTACCGGGACAGCCAGGCCATCTCGCAAAATCAGATCTGAGCAAGACAAGGAGCCAGAAAGGGAAGTTGTATCTGAAGTTGTTGGTCCTGGTCTTTCTGAGGAATCTACAGCGGATGCTCCTCAGGAAATAGATGAATATGAGCTCGTTGATCCTGTTGATATATTGACTCCTCTGGATAAGTCTGGTTTTTGGGATGGAGTGAAAGCATCCAAATGGTCAGAGCGAAAGGAGGCTGTTGCTGAGCTCACCAAGCTAGCTTCAACCAAAAGAATAGCTCCCGGTGACTTCACCGAAATATGTAGGACATTAAAGAAGCTTATAACAGATGTGAACATAGCTGTTGCAGTTGAAGCTATCCAAGCTCTCGGCAATCTTGCCAAGGGCCTAAGAACTCACTTCTCTGGGAGTTCGCGTTTTCTATTGCCAGGGTTACTTGAGAAATTGAAAGAGAAAAAGCCAACAATGAGTGAGGCACTTACCCAGACTCTTCAAGCTATGCATACAGCTGGCTGCTTAAATCTTGTTGACATTGTTGAAGGCAGAATTAACTATGTTAAGACAGCAGTTAAAAATAAAGTACCTCTTGTACGATCATCGACTTTGAACTGGGTGACATTCTGTATTGAAACAAGTAACAAGGCTGTTGTTTTAAAGTTACACAAGGATTATGTTCCTATATTTATGGAGTGCCTCAATGATGGAACCCCAGAAGTGAGGGATGCAGCCTTTTCAGCTCTGACAGCAGTAGCTAAGTCGGTTGGTATGAGGCCTTTGGAGAGGTCCCTGGAGAAACTTGATGATGTCAGAAGAAAGAAGCTTTCTGAAATGATTATGGGTTCCGAGGGCGGTACATCCACTGCTGCAAGTGCAGTTCAAAGCTCTGGTGTCACTGCAGCCTCTCTGGAGACTTCAGACAGTTCATTTGTTCGAAAGTCAGCTGCAAGCATGCTTAGTGGGAAGAGGCCTGTTCAGGCAGTTCCTGCTAAACAAAAAGTGGGATCTGGAAAATCTGGTGGCAGTAAGAAAGGGGAAGTAACTGTACAGGCAAAAGCTTCCAAGTCAGTTGAACCACCTGAAGACGTTGAGCCAGCAGAAATGAGTCTTGAAGAAATTGAAAGCAGATTAGGTTCTCTTATAAAAGCGGACACCATCTCTCAATTGAAGAGCACTGTGTGGAAAGAACGGCTTGAAGCCATATCCTCATTTAAACAAGAAGTGGAAGCTTTACAGGACATCAACCAGTCTGTTGAGTTATTAATTCGTTTACTTTGTGCTGTCCCTGGTTGGAGTGAAAAAAATGTTCAGGTTCAACAACAGGTAATTGAAGTTATTACCTACATAGCCTCTACTGCAATGAAATTTCCGAAGAAATGTGTGGTACTTTGTCTGCTGGGTATAAGCGAGCGGGTAGCAGATATCAAGACTCGGACTCATGCCATGAAGTGTCTGACTTCTTTCTCTGAAGCCATAGGTCCTGGATTTATTTTTGAAAGACTGTACAAAATAATGAAAGAGCACAAGAACCCTAAGGTTCTTAGTGAGGGAATATTGTGGATGGTTTCAGCTGTTGAAGATTTTGGTGTCTCACATTTGAAGCTTAAGGATTTGATTGATTTTTGCAAAGATACTGGACTGCAGTCCAGTGCTGCTGCTACTAGGAATTCTACTATAAAACTTTTGGGTGTTACGCATAAGTTTGTTGGTCCAGATATTAAAGGATTTCTTACGGATGTCAAACCTGCACTGCTTAGTGCACTGGAAGCAGAGTATGAAAAAAATCCATATGAGGGTGCTTCAGTGGTTCTGAAGAGAAATGTTCGAGCAACAGAATCTACTTCATCAATTTCTGCTAGTGGGTTGGACAGTCTTCCACGTGAAGATATTAGTGGAAAAATCACACCTACTCTGCTCAAGAATTTGGAGAGCCCTGATTGGAAGGTTCGCTTGGAGTCAATTGATGCTGTAAATAAAATTTTAGAAGAGGCTAATAAGCGCATCCAGCCAACTGGAACCGTGGAGTTATTTGGTGCCTTAAGGGGACGATTATATGACAGCAATAAGAACCTAGTTGCAGCAACCTTGACAGCTATTGGTAATGTTGCATCTGCAATGGGAGCACCGGTTGAAAAGGCGAGCAAGGGCATTCTGTCAGATATTTTGAAATGTATTGGAGACAATAAGAAGCATATGAGAGAATGCACTTTAGCTACTTTAGACTCATGGCTCTCTGCTGTGAATCTTGATAAAATGGTTCCTTATATCACGGCAGCTATAACAGAAACCAAGCTTGGTGCAGAAGGGCGCAAAGATCTTTTTGACTGGTTGACGAGGCAGCTTTCTGTGCTAAGTGATTATAATGATGCTGTACATCTTCTGAAACCAGCTTCCTCTGCTATGACGGATAAATCTTCAGATGTTCGTAAAGCAGCAGAGGCATGCATTGCTGAAATTTTGAGAGTTAGTGGACATGAAGCAGTTGAGAAAATTTTGAAAGATATTCAAGGGCCAGCTTTAGCTCTTGTTCTTGAACGGATGAAGCCTTTCGGATCTTTACAAGCAATATCAACGGGACCAACATCCAAAAGCATCCCAAAGGTTGGAAAATCTGCTTCCAATGGAGTGTTAAAGCCTGGAACGAAAGCCATATCTTCAAGGACCATTGCAATGAAGGGATCAAGGCCAGGTTCAATACTGTCTGTCCAAGATATAGCTGTCCAGTCACAGGCCTTGCTAAATGTTAAAGATTCAGTTAAGGTGGATAGGGAGAGAATAGTGGTTAAGAGGTTTAAGTTTGAAGAGCCACGAATAGAACAGATTCAAGATCTTGAGAATGATATGATGAAGTACTTCAGAGAGGATCTGCATAGGCGGCTTCTTAGTACAGATTTTAAGAAGCAAGTAGATGGGCTTGAGATGCTGCAGAAGGCACTTCCAACTATTAGAAAGGAAATTATTGAAGTTCTGGATATACTGCTTAGGTGGTTTGTTTTACAATTTTGTAAATCAAACACAACATCCCTGCTAAAGGTGCTGGAACTTCTTCATGACCTTTTTGACATGTTTAGGGATGAGGGATACATGTTGACCGAGTCAGAAGCAGCAATTCTTCTTCCATGCCTAATGGAGAAGCTTGGGCACAATGGTTCTGGAGTACGAAAAGAAATGAAGGAGCTGGCCAGACAAATTGTTCAGGCATATACTGCAGCAAAGAGTTTACCTTATATTTTGGAGGGATTGCGTTCTAAGAACTACCGGACACGAATTGAGTGTGCTGAACTTGTTGGATATTTGATCGATCATCATGGAGCTGAGATAAGTGGACAATTAAAATCTTTGCAAATTGTTGCAAGCTTGACTGCAGAAAGAGAGAATGAAATTAGGAAGGCTGCTCTAAATACGCTAGCTTCCGGTTATAAGCTTCTTGGGGAGGACATATGGAGATATGTCGGGAAGCTAACAGGTGCTCAGAAAAGCTTGATAGAAGAGAGATTTAAGTATACGGTTAAAGATATGGAGAAAAACAAGGAAGGAAAGCCTGGTGAAGCTAGGGCTTCTTTAAGGCGTTCTGTCAGGGAAATTGGGTCTGATGTAGCAGAGCAGAGTGGGGAGGTTGCACGATCTGTTGCTGCTCCAACACTTGCTAGGGGCAATTATGGTCATTCTGAGATTCACAGGGAGAGACAGCTGATGCCTCGTGGATTTGCTGCTGTTAATGGCCCAACAGACTGGAATGAAGCTTTGGAGATCATTTCTTCTGAGGATCCTGATCAGTCGGTTGAAGGAATGAAAGTTGTGTGTCATGAGTTGGCACAGTCGACCAGTGATCCAGAAGGCAGTGCAATGGATGACCTAGTGAAGGATGCAGATAAACTTGTTTCGTGCTTAGCAAAGAAGGTAGCAACGACTTTTGACTTCAGTTTGACAGGAGCTTCATCTAGGTCCTGTAAATATGTCCTGAACACTCTCATGCAGACATTTCAAAATAAAAGATTTGCACATGCTGTCAAGGAGAGCACTCTTGATAGTCTAATCACTGAGCTCCTGCTCTGGCTTTTGGATGAGAGGGTTCCCCATATGGATGATGGCAGCCAACTTCTCAAAGCCTTGAATGTCTTGATGCTAAAGATTCTGGATAATGCCGACCGCACTTCGTCCTTTGTGGTTCTTATCAATCTCTTACGTCCTTTAGATCCCTCAAGATGGCCTGCACCTCCAGCAAATGAAACGTTGGCTGCCAGAAACCAGAAGTTCTCTGATCTGGTTGTCAAATGTTTAATCAAACTTACAAAGGTTCTTCAAAGCACCATATATGATGTCGATCTGGACCACATCCTTCAAAGTATCCATTTATACCTTCAAGACTTGGGTATGGAAGAAATCAGGAGAAGAGCTGGTGCCGATGACAAACCATTGCGCATGGTGAAAACTGTTCTACATGAGCTTGTGAAGCTTCGCGGAGCTGCAATTAAAGGTCACCTTTCTATGGTTCCTATAGACATGAAGCCCCAGCCAATTATTCTTGCTTACATTGATCTTAATCTTGAGACTCTAGCGGCAGCAAGGATGTTGACATCAACTGGGTCTGGGGGCCAAACTCATTGGGGTGATTCAGCAGCTAATAATCCTTCCTCTGCTACACATTCTGCTGATGCACAATTAAAGCAAGAACTTGCTGCCATTTTCAAGAAGATTGGTGACAAGCAGACTTGCTCCATTGGCCTATATGAACTATATCGTATAACCCAACTCTACCCTAAAGTAGATATATTCTCCCAGCTCCAAAATGCCAGTGAGGCTTTTCGGACGTATATTAGAGATGGTTTAGCACAGATGGAGAAGAATGCAGCAGCTGGAAGGACACCTTCAAGTGTACCAATGCCTACTCCTCCCCCAGCTTCTCTTACCGTTTCTTCTCCTGAATTTGCACCCCTTTCCCCTGTACAAACAAATTCCTTAATGGATTCAAAATCATTTAATGTGAAGAGTGAACCAACTAGCTTTAATCTTCCACCGGCATATGCTGAAGACAACAGGCTTCACAATGCCAATACTGCTAGAGGCCTGGTTGAAAACTCGTTAGTTGACCCAAGGAATGAGAGATATATGGGTGGAGTGACTGGTGGGACACTAGATGCAATTAGAGAGAGGATGAAAAGCATGCAACTAGCGGCAGCTTCTGGGAACCTGGAGTCAGAAGCTAGGCCATTAATGTATGTAAATGACAACGAAAACCAGGGACTTTCTGGTCAGATAAATCGGGCATCAGAGAATCCCCTCCAAAGTGGGGTTCTCCCTATGGATGAAAGGGCATTATCTGGGCTTCAAGCTCGGATGGAGAGACTAAAAAGTGGGACACTTGAACCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

2026

Amino Acids

223.15

Weight (kDa)

8.32

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XMAP215_CLASP_TOG	PF21041	12 - 233	2.1e-56	XMAP215/Dis1/CLASP, TOG domain
XMAP215_CLASP_TOG	PF21041	307 - 512	1.6e-06	XMAP215/Dis1/CLASP, TOG domain
CLASP_N	PF12348	308 - 490	1.3e-08	CLASP N terminal
XMAP215_CLASP_TOG	PF21041	622 - 827	9.1e-11	XMAP215/Dis1/CLASP, TOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35630 AT2G35630
fragaria_vesca	FvH4_7g33390 FvH4_7g33390 FvH4_7g33390
malus_domestica	MD01G1232200.v1.1 MD07G1304000.v1.1
prunus_persica	Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1
pyrus_communis	pycom01g24060
rosa_chinensis	RchiOBHm_Chr1g0383361
rosa_laevigata	RLG00000026109
rosa_multiflora	Rmu_sc0007173.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277360
rosa_rugosa	Rorug01G0440800 Rorug01G0440800 Rorug01G0440900
rosa_samantha	Rh1AG466800 Rh1BG424100 Rh1CG437200 Rh1DG456800
rosa_wichuraiana	Rw1G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1031, 1847, 3066, 4125
AasI	GACNNNNNNGTC	1 cut(s)	5955
Acc16I	TGCGCA	1 cut(s)	5126
Acc36I	ACCTGC	1 cut(s)	2458
AccB1I	GGYRCC	2 cut(s)	2738, 5105
AccB7I	CCANNNNNTGG	1 cut(s)	3308
AccBSI	CCGCTC	2 cut(s)	248, 2116
AccI	GTMKAC	2 cut(s)	4208, 4526
AccII	CGCG	2 cut(s)	1123, 5166
AclI	AACGTT	1 cut(s)	4937
AcoI	YGGCCR	1 cut(s)	3885
AcvI	CACGTG	1 cut(s)	2585
AdeI	CACNNNGTG	1 cut(s)	1884
AfiI	CCNNNNNNNGG	9 cut(s)	174, 2498, 3308, 3433, 3736, 4567, 4911, 5194, 5995
AflII	CTTAAG	3 cut(s)	493, 2309, 2743
AflIII	ACRYGT	2 cut(s)	3768, 3789
AgeI	ACCGGT	1 cut(s)	2830
Alw26I	GTCTC	6 cut(s)	1610, 2299, 2877, 4384, 5249, 6043
Alw44I	GTGCAC	1 cut(s)	2463
AlwNI	CAGNNNCTG	3 cut(s)	1691, 5561, 5888
ApaLI	GTGCAC	1 cut(s)	2463
ArsI	GACNNNNNNTTYG	2 cut(s)	1616, 1648
AseI	ATTAAT	2 cut(s)	1967, 5918
AsiGI	ACCGGT	1 cut(s)	2830
Asp700I	GAANNNNTTC	4 cut(s)	3251, 3525, 3557, 3750
AspLEI	GCGC	3 cut(s)	2706, 3015, 5127
AsuC2I	CCSGG	2 cut(s)	715, 990
AsuII	TTCGAA	1 cut(s)	1639
AsuNHI	GCTAGC	2 cut(s)	964, 4111
AvaII	GGWCC	8 cut(s)	794, 1491, 2183, 2414, 3281, 3366, 4650, 5035
AxyI	CCTNAGG	2 cut(s)	831, 2238
BaeGI	GKGCMC	2 cut(s)	2467, 3849
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BalI	TGGCCA	1 cut(s)	3887
BamHI	GGATCC	1 cut(s)	4471
BanI	GGYRCC	2 cut(s)	2738, 5105
BanII	GRGCYC	5 cut(s)	702, 855, 957, 2639, 4752
BarI	GAAGNNNNNNTAC	2 cut(s)	1734, 1766
BauI	CACGAG	1 cut(s)	4404
BbrPI	CACGTG	1 cut(s)	2585
BbsI	GAAGAC	6 cut(s)	143, 185, 332, 1794, 2570, 5742
BceAI	ACGGC	4 cut(s)	31, 603, 1910, 2991
BcgI	CGANNNNNNTGC	4 cut(s)	25, 59, 92, 126
BciVI	GTATCC	3 cut(s)	664, 3779, 5063
BclI	TGATCA	1 cut(s)	4477
BcnI	CCSGG	2 cut(s)	715, 990
BcoDI	GTCTC	6 cut(s)	1610, 2299, 2877, 4384, 5249, 6043
BfmI	CTRYAG	7 cut(s)	816, 1602, 2345, 3629, 3912, 4068, 5202
BfrI	CTTAAG	3 cut(s)	493, 2309, 2743
BfuAI	ACCTGC	1 cut(s)	2458
BfuI	GTATCC	3 cut(s)	664, 3779, 5063
BglI	GCCNNNNNGGC	2 cut(s)	315, 5504
BglII	AGATCT	3 cut(s)	743, 3019, 3532
BlpI	GCTNAGC	2 cut(s)	951, 4594
BmcAI	AGTACT	1 cut(s)	3557
Bme18I	GGWCC	8 cut(s)	794, 1491, 2183, 2414, 3281, 3366, 4650, 5035
BmrI	ACTGGG	2 cut(s)	1327, 5298
BmtI	GCTAGC	2 cut(s)	968, 4115
BmuI	ACTGGG	2 cut(s)	1327, 5298
BoxI	GACNNNNGTC	2 cut(s)	147, 2347
BpiI	GAAGAC	6 cut(s)	143, 185, 332, 1794, 2570, 5742
BpmI	CTGGAG	5 cut(s)	1517, 1634, 3879, 4908, 5918
Bpu10I	CCTNAGC	2 cut(s)	342, 3686
Bpu1102I	GCTNAGC	2 cut(s)	951, 4594
Bpu14I	TTCGAA	1 cut(s)	1639
BpuEI	CTTGAG	7 cut(s)	629, 1166, 2606, 3557, 3641, 4891, 5273
BpuMI	CCSGG	2 cut(s)	715, 990
Bsa29I	ATCGAT	1 cut(s)	4005
BsaAI	YACGTR	1 cut(s)	2585
BsaBI	GATNNNNATC	3 cut(s)	4476, 5028, 5247
BsaWI	WCCGGW	3 cut(s)	2830, 3963, 4118
BsaXI	ACNNNNNCTCC	4 cut(s)	1108, 1138, 2817, 2847
Bsc4I	CCNNNNNNNGG	9 cut(s)	174, 2498, 3308, 3433, 3736, 4567, 4911, 5194, 5995
Bse118I	RCCGGY	4 cut(s)	202, 314, 2830, 5722
Bse21I	CCTNAGG	2 cut(s)	831, 2238
Bse3DI	GCAATG	7 cut(s)	2070, 2826, 3150, 3369, 3381, 4557, 5120
Bse8I	GATNNNNATC	3 cut(s)	4476, 5028, 5247
BseCI	ATCGAT	1 cut(s)	4005
BseJI	GATNNNNATC	3 cut(s)	4476, 5028, 5247
BseLI	CCNNNNNNNGG	9 cut(s)	174, 2498, 3308, 3433, 3736, 4567, 4911, 5194, 5995
BseMI	GCAATG	7 cut(s)	2070, 2826, 3150, 3369, 3381, 4557, 5120
BseRI	GAGGAG	3 cut(s)	819, 870, 5586
BseSI	GKGCMC	2 cut(s)	2467, 3849
BseYI	CCCAGC	4 cut(s)	2101, 5217, 5484, 5602
BsgI	GTGCAG	4 cut(s)	1599, 2436, 3024, 4902
Bsh1236I	CGCG	2 cut(s)	1123, 5166
Bsh1285I	CGRYCG	1 cut(s)	4855
BshNI	GGYRCC	2 cut(s)	2738, 5105
BshTI	ACCGGT	1 cut(s)	2830
BshVI	ATCGAT	1 cut(s)	4005
BsiEI	CGRYCG	1 cut(s)	4855
BsiSI	CCGG	8 cut(s)	203, 315, 714, 990, 2831, 3964, 4119, 5723
BslFI	GGGAC	8 cut(s)	730, 1477, 1973, 2763, 3294, 5848, 5961, 6076
BslI	CCNNNNNNNGG	9 cut(s)	174, 2498, 3308, 3433, 3736, 4567, 4911, 5194, 5995
BsmAI	GTCTC	6 cut(s)	1610, 2299, 2877, 4384, 5249, 6043
BsmFI	GGGAC	8 cut(s)	730, 1477, 1973, 2763, 3294, 5848, 5961, 6076
BsmI	GAATGC	3 cut(s)	2853, 2912, 5557
Bsp119I	TTCGAA	1 cut(s)	1639
Bsp1407I	TGTACA	4 cut(s)	1750, 2208, 3076, 5650
Bsp1720I	GCTNAGC	2 cut(s)	951, 4594
Bsp19I	CCATGG	1 cut(s)	423
BspDI	ATCGAT	1 cut(s)	4005
BspFNI	CGCG	2 cut(s)	1123, 5166
BspHI	TCATGA	2 cut(s)	3754, 4510
BspMAI	CTGCAG	5 cut(s)	1606, 2349, 3633, 3916, 4072
BspMI	ACCTGC	1 cut(s)	2458
BspOI	GCTAGC	2 cut(s)	968, 4115
BspQI	GCTCTTC	3 cut(s)	1868, 3501, 5092
BspT104I	TTCGAA	1 cut(s)	1639
BspT107I	GGYRCC	2 cut(s)	2738, 5105
BspTI	CTTAAG	3 cut(s)	493, 2309, 2743
BsrBI	CCGCTC	2 cut(s)	248, 2116
BsrDI	GCAATG	7 cut(s)	2070, 2826, 3150, 3369, 3381, 4557, 5120
BsrFI	RCCGGY	4 cut(s)	202, 314, 2830, 5722
BsrGI	TGTACA	4 cut(s)	1750, 2208, 3076, 5650
BssAI	RCCGGY	4 cut(s)	202, 314, 2830, 5722
BssNAI	GTATAC	1 cut(s)	4209
BssSI	CACGAG	1 cut(s)	4404
BssT1I	CCWWGG	3 cut(s)	423, 1089, 5798
Bst1107I	GTATAC	1 cut(s)	4209
Bst2BI	CACGAG	1 cut(s)	4404
BstAFI	CTTAAG	3 cut(s)	493, 2309, 2743
BstAPI	GCANNNNNTGC	5 cut(s)	224, 233, 1691, 3152, 3911
BstAUI	TGTACA	4 cut(s)	1750, 2208, 3076, 5650
BstBAI	YACGTR	1 cut(s)	2585
BstBI	TTCGAA	1 cut(s)	1639
BstDSI	CCRYGG	3 cut(s)	47, 423, 2724
BstEII	GGTNACC	1 cut(s)	5183
BstENI	CCTNNNNNAGG	3 cut(s)	172, 3734, 4565
BstFNI	CGCG	2 cut(s)	1123, 5166
BstHHI	GCGC	3 cut(s)	2706, 3015, 5127
BstMAI	GTCTC	6 cut(s)	1610, 2299, 2877, 4384, 5249, 6043
BstMCI	CGRYCG	1 cut(s)	4855
BstNSI	RCATGY	6 cut(s)	1660, 3150, 3772, 3793, 4712, 5872
BstPAI	GACNNNNGTC	2 cut(s)	147, 2347
BstPI	GGTNACC	1 cut(s)	5183
BstSFI	CTRYAG	7 cut(s)	816, 1602, 2345, 3629, 3912, 4068, 5202
BstSLI	GKGCMC	2 cut(s)	2467, 3849
BstUI	CGCG	2 cut(s)	1123, 5166
BstV2I	GAAGAC	6 cut(s)	143, 185, 332, 1794, 2570, 5742
BstX2I	RGATCY	8 cut(s)	743, 1709, 3019, 3257, 3532, 3568, 4471, 4900
BstXI	CCANNNNNNTGG	2 cut(s)	2717, 4437
BstYI	RGATCY	8 cut(s)	743, 1709, 3019, 3257, 3532, 3568, 4471, 4900
BstZ17I	GTATAC	1 cut(s)	4209
Bsu15I	ATCGAT	1 cut(s)	4005
Bsu36I	CCTNAGG	2 cut(s)	831, 2238
BsuI	GTATCC	3 cut(s)	664, 3779, 5063
BsuTUI	ATCGAT	1 cut(s)	4005
BtgI	CCRYGG	3 cut(s)	47, 423, 2724
BtsI	GCAGTG	4 cut(s)	1566, 1599, 2453, 4552
BveI	ACCTGC	1 cut(s)	2458
CaiI	CAGNNNCTG	3 cut(s)	1691, 5561, 5888
CciI	TCATGA	2 cut(s)	3754, 4510
CfoI	GCGC	3 cut(s)	2706, 3015, 5127
Cfr10I	RCCGGY	4 cut(s)	202, 314, 2830, 5722
ClaI	ATCGAT	1 cut(s)	4005
CseI	GACGC	1 cut(s)	392
CspAI	ACCGGT	1 cut(s)	2830
DraI	TTTAAA	3 cut(s)	540, 1362, 1918
DraIII	CACNNNGTG	1 cut(s)	1884
DrdI	GACNNNNNNGTC	1 cut(s)	5955
DseDI	GACNNNNNNGTC	1 cut(s)	5955
EaeI	YGGCCR	1 cut(s)	3885
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	4 cut(s)	700, 853, 955, 4750
Eco130I	CCWWGG	3 cut(s)	423, 1089, 5798
Eco147I	AGGCCT	4 cut(s)	1480, 1675, 3437, 5772
Eco24I	GRGCYC	5 cut(s)	702, 855, 957, 2639, 4752
Eco32I	GATATC	1 cut(s)	2128
Eco47I	GGWCC	8 cut(s)	794, 1491, 2183, 2414, 3281, 3366, 4650, 5035
Eco53kI	GAGCTC	4 cut(s)	700, 853, 955, 4750
Eco72I	CACGTG	1 cut(s)	2585
Eco81I	CCTNAGG	2 cut(s)	831, 2238
Eco91I	GGTNACC	1 cut(s)	5183
EcoICRI	GAGCTC	4 cut(s)	700, 853, 955, 4750
EcoNI	CCTNNNNNAGG	3 cut(s)	172, 3734, 4565
EcoO109I	RGGNCCY	4 cut(s)	1093, 1491, 2183, 4650
EcoO65I	GGTNACC	1 cut(s)	5183
EcoRI	GAATTC	2 cut(s)	158, 2371
EcoRV	GATATC	1 cut(s)	2128
EcoT14I	CCWWGG	3 cut(s)	423, 1089, 5798
EcoT22I	ATGCAT	3 cut(s)	229, 1212, 3152
EcoT38I	GRGCYC	5 cut(s)	702, 855, 957, 2639, 4752
ErhI	CCWWGG	3 cut(s)	423, 1089, 5798
FaqI	GGGAC	8 cut(s)	730, 1477, 1973, 2763, 3294, 5848, 5961, 6076
FauI	CCCGC	1 cut(s)	2109
FauNDI	CATATG	5 cut(s)	2494, 2898, 4145, 4785, 5728
FbaI	TGATCA	1 cut(s)	4477
FblI	GTMKAC	2 cut(s)	4208, 4526
FriOI	GRGCYC	5 cut(s)	702, 855, 957, 2639, 4752
FspI	TGCGCA	1 cut(s)	5126
GlaI	GCGC	3 cut(s)	2705, 3014, 5126
GsaI	CCCAGC	4 cut(s)	2105, 5221, 5488, 5606
GsuI	CTGGAG	5 cut(s)	1517, 1634, 3879, 4908, 5918
HapII	CCGG	8 cut(s)	203, 315, 714, 990, 2831, 3964, 4119, 5723
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	3 cut(s)	2706, 3015, 5127
Hin6I	GCGC	3 cut(s)	2704, 3013, 5125
HinP1I	GCGC	3 cut(s)	2704, 3013, 5125
HincII	GTYRAC	6 cut(s)	1237, 3036, 3795, 4527, 5280, 5794
HindII	GTYRAC	6 cut(s)	1237, 3036, 3795, 4527, 5280, 5794
HpaII	CCGG	8 cut(s)	203, 315, 714, 990, 2831, 3964, 4119, 5723
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	5 cut(s)	1791, 2584, 4891, 4937, 5516
HpySE526I	ACGT	5 cut(s)	1791, 2584, 4891, 4937, 5516
HspAI	GCGC	3 cut(s)	2704, 3013, 5125
Ksp22I	TGATCA	1 cut(s)	4477
LguI	GCTCTTC	3 cut(s)	1868, 3501, 5092
MaeII	ACGT	5 cut(s)	1791, 2584, 4891, 4937, 5516
MbiI	CCGCTC	2 cut(s)	248, 2116
MfeI	CAATTG	3 cut(s)	471, 1868, 2664
MflI	RGATCY	8 cut(s)	743, 1709, 3019, 3257, 3532, 3568, 4471, 4900
MlsI	TGGCCA	1 cut(s)	3887
MluNI	TGGCCA	1 cut(s)	3887
MmeI	TCCRAC	7 cut(s)	602, 1976, 2550, 3289, 3668, 3973, 4367
Mox20I	TGGCCA	1 cut(s)	3887
Mph1103I	ATGCAT	3 cut(s)	229, 1212, 3152
MroXI	GAANNNNTTC	4 cut(s)	3251, 3525, 3557, 3750
MscI	TGGCCA	1 cut(s)	3887
MslI	CAYNNNNRTG	5 cut(s)	922, 3374, 4676, 4788, 5313
Msp20I	TGGCCA	1 cut(s)	3887
MspA1I	CMGCKG	6 cut(s)	821, 1217, 1649, 2276, 4396, 5561
MspCI	CTTAAG	3 cut(s)	493, 2309, 2743
MspI	CCGG	8 cut(s)	203, 315, 714, 990, 2831, 3964, 4119, 5723
MunI	CAATTG	3 cut(s)	471, 1868, 2664
Mva1269I	GAATGC	3 cut(s)	2853, 2912, 5557
MvnI	CGCG	2 cut(s)	1123, 5166
NciI	CCSGG	2 cut(s)	715, 990
NcoI	CCATGG	1 cut(s)	423
NdeI	CATATG	5 cut(s)	2494, 2898, 4145, 4785, 5728
NheI	GCTAGC	2 cut(s)	964, 4111
NmeAIII	GCCGAG	1 cut(s)	1056
NmuCI	GTSAC	7 cut(s)	992, 1321, 1597, 3429, 5183, 5405, 5824
NsbI	TGCGCA	1 cut(s)	5126
NsiI	ATGCAT	3 cut(s)	229, 1212, 3152
NspI	RCATGY	6 cut(s)	1660, 3150, 3772, 3793, 4712, 5872
NspV	TTCGAA	1 cut(s)	1639
PaeI	GCATGC	3 cut(s)	1660, 3150, 5872
PagI	TCATGA	2 cut(s)	3754, 4510
PceI	AGGCCT	4 cut(s)	1480, 1675, 3437, 5772
PciI	ACATGT	2 cut(s)	3768, 3789
PciSI	GCTCTTC	3 cut(s)	1868, 3501, 5092
PctI	GAATGC	3 cut(s)	2853, 2912, 5557
PdmI	GAANNNNTTC	4 cut(s)	3251, 3525, 3557, 3750
PflFI	GACNNNGTC	1 cut(s)	3799
PflMI	CCANNNNNTGG	1 cut(s)	3308
PfoI	TCCNGGA	1 cut(s)	2185
PinAI	ACCGGT	1 cut(s)	2830
PmaCI	CACGTG	1 cut(s)	2585
PmlI	CACGTG	1 cut(s)	2585
Ppu21I	YACGTR	1 cut(s)	2585
PpuMI	RGGWCCY	3 cut(s)	1491, 2183, 4650
PscI	ACATGT	2 cut(s)	3768, 3789
PshAI	GACNNNNGTC	2 cut(s)	147, 2347
PshBI	ATTAAT	2 cut(s)	1967, 5918
PsiI	TTATAA	4 cut(s)	1031, 1847, 3066, 4125
Psp124BI	GAGCTC	4 cut(s)	702, 855, 957, 4752
Psp1406I	AACGTT	1 cut(s)	4937
Psp5II	RGGWCCY	3 cut(s)	1491, 2183, 4650
PspCI	CACGTG	1 cut(s)	2585
PspEI	GGTNACC	1 cut(s)	5183
PspFI	CCCAGC	4 cut(s)	2101, 5217, 5484, 5602
PspPPI	RGGWCCY	3 cut(s)	1491, 2183, 4650
PstI	CTGCAG	5 cut(s)	1606, 2349, 3633, 3916, 4072
PstNI	CAGNNNCTG	3 cut(s)	1691, 5561, 5888
PsuI	RGATCY	8 cut(s)	743, 1709, 3019, 3257, 3532, 3568, 4471, 4900
PsyI	GACNNNGTC	1 cut(s)	3799
PvuII	CAGCTG	5 cut(s)	1217, 1649, 2276, 4396, 5561
RseI	CAYNNNNRTG	5 cut(s)	922, 3374, 4676, 4788, 5313
SacI	GAGCTC	4 cut(s)	702, 855, 957, 4752
SalI	GTCGAC	1 cut(s)	4525
SapI	GCTCTTC	3 cut(s)	1868, 3501, 5092
ScaI	AGTACT	1 cut(s)	3557
SfcI	CTRYAG	7 cut(s)	816, 1602, 2345, 3629, 3912, 4068, 5202
SfuI	TTCGAA	1 cut(s)	1639
SinI	GGWCC	8 cut(s)	794, 1491, 2183, 2414, 3281, 3366, 4650, 5035
SmiMI	CAYNNNNRTG	5 cut(s)	922, 3374, 4676, 4788, 5313
SphI	GCATGC	3 cut(s)	1660, 3150, 5872
SseBI	AGGCCT	4 cut(s)	1480, 1675, 3437, 5772
SspI	AATATT	1 cut(s)	2259
SstI	GAGCTC	4 cut(s)	702, 855, 957, 4752
StuI	AGGCCT	4 cut(s)	1480, 1675, 3437, 5772
StyI	CCWWGG	3 cut(s)	423, 1089, 5798
TaiI	ACGT	5 cut(s)	1794, 2587, 4894, 4940, 5519
TaqI	TCGA	8 cut(s)	102, 509, 1307, 1639, 2530, 4005, 4526, 5028
TaqII	GACCGA	1 cut(s)	3812
TatI	WGTACW	6 cut(s)	1750, 2208, 3076, 3555, 3590, 5650
TauI	GCSGC	4 cut(s)	251, 3583, 5267, 5882
TseFI	GTSAC	7 cut(s)	992, 1321, 1597, 3429, 5183, 5405, 5824
Tsp45I	GTSAC	7 cut(s)	992, 1321, 1597, 3429, 5183, 5405, 5824
TspGWI	ACGGA	3 cut(s)	2453, 3125, 3256
Tth111I	GACNNNGTC	1 cut(s)	3799
Van91I	CCANNNNNTGG	1 cut(s)	3308
Vha464I	CTTAAG	3 cut(s)	493, 2309, 2743
VneI	GTGCAC	1 cut(s)	2463
VpaK11BI	GGWCC	8 cut(s)	794, 1491, 2183, 2414, 3281, 3366, 4650, 5035
VspI	ATTAAT	2 cut(s)	1967, 5918
XagI	CCTNNNNNAGG	3 cut(s)	172, 3734, 4565
XceI	RCATGY	6 cut(s)	1660, 3150, 3772, 3793, 4712, 5872
XcmI	CCANNNNNNNNNTGG	3 cut(s)	103, 4790, 5951
XmiI	GTMKAC	2 cut(s)	4208, 4526
XmnI	GAANNNNTTC	4 cut(s)	3251, 3525, 3557, 3750
ZrmI	AGTACT	1 cut(s)	3557
Zsp2I	ATGCAT	3 cut(s)	229, 1212, 3152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.