Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007772

Physical Location & Seq

Genomic Coordinates Reverse (-)

68111904 .. 68126648

Gene Structure 14745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG466800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6042 bp

ATGTCGTCGGAGGAAGAGAAGCTGTTGAAGGAGGCGAAGAAATTGCCGTGGGATGATCGGCTTTTCCATAAGAACTGGAAGGTGCGGAATGAAGCCAACATCGACTTGGCTGCCCTGTGCGACTCCATCACCGATCCAAAGGACTCTCGTCTTCGTGAATTCGGTTCGTTTTTTAGGAAGACTCTGGCGGATGCCAATTCGCCGGTACAAGAGAAGGCACTTGATGCATTGATTGCTTATTTACGAGCGGCTGATGCTGATGCTGGAAGGCATGGCAAGGAAGTTTGCGATACTATCGTTGCGAAATGCCTCACCGGCAGGCCGAAGACGGTGGAGAAGGCTCAGGCTTCCTTTATGCTTTGGGTTGAATTGGAGGCTGTGGACGCTTTCTTGGATGCCATGGAGAAAGCAATAAAAGCCAAAGTTGCCAAAGCTGTTGTGCCTGCAATTGATGTCATGTTTCAAGCCTTAAGTGAATTTGGCTCAAAAATTATTCCTCCGAAAAGGATTTTAAAGATGCTTCCTGAACTATTTGACCATCAAGATCAAAATGTTCGTGCATCTTCTAAAGGACTTACTCTTGAGCTTTGCCGTTGGATAGGAAAAGACCCTGTAAAATCAATATTGTTTGAAAAAATGAGGGATACAATGAAAAAAGAATTGGAGGCTGAGCTCGTCAATGTTACCGTGACAGCCAGGCCATCTCGCAAAATCAGATCTGAGCAAGACAAGGAGCCAGAAAGGGAAGTTGTATCTGAAGTTGTTGGTCCTGGTCTTTCTGAGGAATCTACAGCGGATGCTCCTCAGGAAATAGATGAATATGAGCTTGTTGATCCTGTTGATATATTGACACCTCTAGATAAGTCTGGATTTTGGGATGGAGTGAAAGCATCCAAATGGTCAGAGCGAAAGGAGGCTGTTGCTGAGCTCACCAAGCTAGCTTCAACCAAAAGAATAGCTCCTGGTGACTTCACTGAAATATGTAGGACATTAAAGAAGCTTATAACAGATGTGAACATAGCTGTTGCAGTTGAAGCTATCCAAGCTCTCGGCAATCTTGCCAAGGGCCTAAGAACTCACTTCTCTGGGAGTTCGCGTTTTCTATTGCCAGGGTTACTTGAGAAATTGAAAGAGAAAAAGCCAACTATGAGTGAGGCGCTTACCCAGACTCTTCAAGCTATGCATACAGCTGGCTGCTTAAATCTTGTTGACATTGTTGAAGATATTAAGACAGCAGTTAAAAATAAAGTACCTCTTGTACGATCATCGGCTTTGAACTGGGTGACATTTTGTATTGAAACAAGTAACAAGGCTGTTGTTTTAAAGTTACACAAGGATTATGTTCCTATATTTATGGAGTGCCTTAATGATGGAACCCCAGAAGTGAGGGATGCAGCCTTTTCAGCTCTGACAGCAGTAGCTAAGTCGGTTGGTATGAGGCCTTTGGAGAGGTCCCTGGAGAAACTTGATGATGTCAGAAGAAAGAAGCTTTCTGAAATGATTATGGGTTCTGAGGGTGGTACATCCACCGCTGCAAGCGCAGTTCAAAGCTCTGGTGTCACTGCAGCCTCTCTGGAGACTTCAGACAGTTCATTTGTTCGAAAGTCAGCTGCAAGCATGCTTAGTGGGAAGAGGCCTGTTCAGGCAGTTCCTGCTAAACAAAAAGGGGGATCTGGAAAATCTGGTGGCAGTAAGAAAGGGGAAGTAACTGTACAGGCAAAAGCTTCCAAGTCAGTTGAACCACCTGAAGACGTTGAGCCAGCAGAAATGAGTCTTGAAGAAATTGAAAGCAGATTAGGTTCTCTTATAAAAGCGGCTACCATCTCTCAATTGAAGAGCACCGTGTGGAAAGAACGGCTTGAAGCCATATCCTCATTTAAACAAGAAGTGGAAGCTTTACAGGACATCAACCAGTCTGTTGAGTTATTGATTCGTTTACTTTGCGCTGTCCCTGGTTGGAGTGAAAAAAATGTTCAGGTTCAACAACAGGTAATTGAAGTTATTACCTACGTAGCCTCCACTGCAATGAAATTTCCGAAGAAATGTGTGGTACTTTGTCTGCTGGGTATAAGCGAGCGGGTAGCAGATATCAAGACTCGGACTCATGCCATGAAGTGTCTGACTTCTTTCTCTGAAGCCATAGGTCCAGGATTTGTTTTTGAAAGACTTTACAAAATTATGAAAGAGCACAAGAACCCTAAGGTTCTTAGCGAGGGAATATTGTGGATGGTTTCAGCCGTTGAAGATTTTGGCGTCTCACATTTGAAGCTTAAGGATTTGATTGATTTTTGCAAAGATACTGGACTGCAGTCCAGTGCTGCTGCTACTAGGAATTCTACTATAAAACTTTTGGGTGTTACGCATAAGTTTGTTGGTCCAGATATTAAAGGATTTCTTACGGATGTCAAACCTGCACTACTTAGTGCACTGGAAGCAGAGTATGAAAAAAATCCATTTGAGGGTGCTTCAGTGGTTCTTAAGAGAAATGTTCGAGCAACAGAATCTACTTCATCAATTTCTGCTAGTGGGTTGGACAGTCTTCCACGTGAAGATATTAGTGGAAAAATCACACCTACTCTGCTGAAGAATTTGGAGAGCCCTGATTGGAAGGTTCGCTTGGAGTCAATTGATGCTGTAAATAAAATTTTAGAAGAGGCTAATAAGCGCATCCAGCCAACTGGAACTGTGGAGTTATTTGGTGCCTTAAGGGGACGATTATATGACAGCAATAAGAACCTAGTTGCAGCAACCTTGACAGCTATTGGTAATGTTGCATCTGCAATGGGAGCACCGGTTGAAAAGGCGAGCAAGGGCATTCTGTCAGATATTTTGAAATGTATTGGAGACAATAAGAAGCATATGAGAGAATGCACTTTAGCTACTTTAGACTCATGGCTCTCTGCTGTGAATCTTGATAAAATGGTTCCTTATATCACGGCAGCTATAACAGAAACCAAGCTTGGTGCAGAAGGGCGCAAAGATCTTTTTGACTGGTTGACGAGGCAGCTTTCTGTGCTAAGTGATTATAATGATGCTGTACATCTTCTGAAACCAGCTTCCTCTGCTATGACGGATAAATCTTCAGATGTTCGTAAAGCAGCAGAGGCATGCATTGCTGAAATTTTGAGAGTTAGTGGACATGAAGCAGTTGAGAAAATTTTGAAAGATATTCAAGGGCCAGCTTTAGCTCTTGTTCTTGAACGGTTGAAGCCTTTTGGGTCTTTACAAGCAATATCAGTGGGACCAACATCCAAAAGTATCCCAAAGGTTGGAAAATCTGCTTCCAATGGAGTTTTAAAGCCTGGAACGAAAGCCATATCTTCAAGGACCATTGCAATGAAGGGATCAAGGCCAGGTTCAATACTGTCTGTCCAAGATATAGCTGTCCAGTCACAGGCCTTGCTAAATGTTAAAGATTCAGTTAAGGTGGATAGGGAGAGAATAGTGGTTAAGAGGTTTAAGTTTGAAGAGCCACGAATAGAACAGATTCAAGATCTTGAGAATGATATGATGAAGTACTTCAGAGAGGATCTGCATAGGCGGCTTCTTAGTACAGATTTTAAGAAGCAAGTAGATGGGCTTGAGATGCTGCAGAAGGCACTTCCAACTATTAGAAAGGAAATTATTGAAGTTCTGGATATACTGCTTAGGTGGTTTGTTTTACAATTTTGTAAATCGAACACAACATCCCTGTTAAAGGTGTTGGAATTTCTTCATGACCTTTTTGACATGTTTAGGGATGAGGGATACATGTTGACCGAATCAGAAGCAGCAATTCTTCTTCCATGCCTAATGGAGAAGCTTGGGCACAATGGTTCTGGAGTACGAAAAGAAATGAAGGAGCTGGCCAGACAAATTGTTCAGGCATATACTGCAGCAAAGAGTTTACCTTATATTTTGGAGGGATTGCGTTCTAAGAACTACCGGACACGAATTGAGTGTGCTGAACTTGTTGGATATTTGATCGATCATCATGGAGCTGAGATAAGTGGACAATTAAAATCTTTGCAAATTGTTGCAAGCTTGACTGCAGAAAGAGAGAATGAAATTAGGAAGGCTGCTCTAAATACGCTAGCTTCTGGTTATAAGCTTCTTGGGGAGGACATATGGAGATATGTCGGGAAGCTAACAGGTGCTCAGAAAAGCTTGATAGAAGAGAGATTTAAGTATACGGTTAAAGATATGGAGAAAAACAAGGAAGGAAAGCCTGGTGAAGCTAGGGCTTCTTTCAGGCGTTCTGTCAGGGAAATTGGGTCTGATGTAGCAGAGCAGAGTGGGGAGGTTGCACGATCTGTTGCTGCTCCAACACTTGCTAGGGGCAATTATGGTCATTCTGAGATTCACAGGGAGAGACAGGTGATGCCTCGTGGATTTGCTGCTGTTAATGGCCCAACAGACTGGAATGAAGCTTTGGAGATCATTTCTTCTGAGGATCCTGATCAGTCGGTTGAAGGAATGAAAGTTGTGTGTCATGAGTTGGCACAGTCAACCAGTGATCCAGAAGGCAGTGCAATGGATGACCTAGTGAAGGATGCAGATAAACTTGTTTCGTGCTTAGCGAAGAAGGTAGCAACGACTTTTGACTTCAGTTTGACAGGAGCTTCATCTAGGTCCTGTAAATATGTCCTGAACACTCTCATGCAGACATTTCAAAATAAAAGATTTGCACATGCTGTCAAGGAGAGCACTCTTGATAGTCTAATCACTGAGCTCCTGCTCTGGCTTTTGGATGAGAGGGTTCCCCATATGGATGATGGCAGCCAACTTCTCAAAGCCTTGAATGTCTTGATGCTAAAGATTCTGGATAATGCCGACCGCACTTCGTCCTTTGTGGTTCTTATCAATCTCTTACGTCCTTTAGATCCCTCAAGATGGCCTGCATCTCCAGCAAATGAAACATTGGCTGCCAGAAACCAGAAATTCTCTGATCTGGTTGTCAAATGTTTGATCAAACTTACAAAGGTTCTTCAAAGCACCATATATGATGTCGATCTGGACCACATCCTTCAAAGTATCCATTTATACCTTCAAGACTTGGGCATGGAAGAAATCAGGAGAAGAGCTGGTGCTGATGACAAACCATTGCGCATGGTGAAAACTGTTCTACATGAGCTTGTGAAGCTTCGTGGAGCTGCAATTAAAGGTCACCTTTCTATGGTTCCTATAGACATGAAGCCCCAGCCAATAATTCTTGCTTACATTGATCTTAATCTTGAGACTCTAGCGGCAGCAAGGATGTTGACATCAACCGGGTCTGGGGGCCAAACTCATTGGGGTGATTCAGCAGCTAATAATCCTTCCTCTGCTACACATTCTGCTGATGCACAATTAAAGCAAGAACTTGCTGCCATTTTCAAGAAGATTGGTGACAAGCAGACTTGCTCCATTGGTCTATATGAACTATATCGTATAACCCAACTCTACCCAAAAGTAGATATATTCTCCCAGCTCCAAAATGCCAGTGAGGCTTTTCGGACGTATATTAGAGATGGTTTAGCACAGATGGAGAAGAATGCAGCAGCTGGAAGGACACCTTCAAGTGTACCAATGCCTACTCCTCCCCCAGCTTCTCTTACCATTTCTTCTCCTGAATTTGCACCCCTTTCCCCTGTACACACAAATTCCTTAATGGATTCAAAATCATTTAATGTGAAGAGTGAACCAACTAGCTTTAATCTTCCACCGGCATATGCTGAAGACAACAGGCTTCACAATGCCAATACTGCTAGAGGCCTGGTTGAAAACTCGTTAGTTGACCCAAGGAATGATAGATATATGGGTGGAGTGACTAGTGGGACACTAGATGCAATTAGAGAGAGGATGAAAAGCATGCAACTAGCGGCAGCTTCTGGGAACCTGGAGTCAGAAGCTAGGCCATTAATGTATGTAAATGACAACCAAAATCAGGGACTCTCTGGTCAGATAAATCGGGCATCAGAGAATCCCCTCCAAAGTGGGGTTCTCCCTATGGATGAAAGGGCATTATCTGGGCTTCAAGCTCGGATGGAGAGACTAAAAAGTGGGACACTTGAACCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009574 GO:0009832 GO:0009920 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030054 GO:0030863 GO:0030951 GO:0030952 GO:0030981 GO:0031109 GO:0032506 GO:0032991 GO:0034622 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0051010 GO:0051258 GO:0051301 GO:0055044 GO:0061640 GO:0065003 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT

Protein Analysis

2013

Amino Acids

221.55

Weight (kDa)

8.26

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XMAP215_CLASP_TOG	PF21041	12 - 224	1.9e-59	XMAP215/Dis1/CLASP, TOG domain
XMAP215_CLASP_TOG	PF21041	298 - 499	2.2e-08	XMAP215/Dis1/CLASP, TOG domain
CLASP_N	PF12348	299 - 477	2e-10	CLASP N terminal
XMAP215_CLASP_TOG	PF21041	609 - 814	3.3e-11	XMAP215/Dis1/CLASP, TOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35630 AT2G35630
fragaria_vesca	FvH4_7g33390 FvH4_7g33390 FvH4_7g33390
malus_domestica	MD01G1232200.v1.1 MD07G1304000.v1.1
prunus_persica	Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1 Prupe.1G083500_v2.0.a1
pyrus_communis	pycom01g24060
rosa_chinensis	RchiOBHm_Chr1g0383361
rosa_laevigata	RLG00000026109
rosa_multiflora	Rmu_sc0007173.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277360
rosa_rugosa	Rorug01G0440800 Rorug01G0440800 Rorug01G0440900
rosa_samantha	Rh1AG466800 Rh1BG424100 Rh1CG437200 Rh1DG456800
rosa_wichuraiana	Rw1G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1004, 1808, 3027, 4086
AasI	GACNNNNNNGTC	1 cut(s)	5916
Acc16I	TGCGCA	1 cut(s)	5087
Acc36I	ACCTGC	1 cut(s)	2419
AccB1I	GGYRCC	1 cut(s)	2699
AccB7I	CCANNNNNTGG	1 cut(s)	3269
AccBSI	CCGCTC	2 cut(s)	248, 2077
AccI	GTMKAC	1 cut(s)	4169
AccII	CGCG	1 cut(s)	1096
AclWI	GGATC	9 cut(s)	128, 827, 1678, 3352, 3537, 4427, 4440, 4490, 4856
AcoI	YGGCCR	1 cut(s)	3846
AcvI	CACGTG	1 cut(s)	2546
AcyI	GRCGYC	1 cut(s)	2253
AdeI	CACNNNGTG	1 cut(s)	1845
AflII	CTTAAG	4 cut(s)	469, 2270, 2477, 2704
AflIII	ACRYGT	2 cut(s)	3729, 3750
AgeI	ACCGGT	1 cut(s)	2791
AhlI	ACTAGT	1 cut(s)	5789
AloI	GAACNNNNNNTCC	2 cut(s)	3671, 3703
Alw21I	GWGCWC	9 cut(s)	675, 930, 1841, 2190, 2428, 2791, 4138, 4688, 4713
Alw26I	GTCTC	6 cut(s)	1571, 2260, 2838, 4345, 5210, 6004
Alw44I	GTGCAC	1 cut(s)	2424
AlwI	GGATC	9 cut(s)	128, 827, 1678, 3352, 3537, 4427, 4440, 4490, 4856
AlwNI	CAGNNNCTG	3 cut(s)	1652, 5522, 5849
ApaLI	GTGCAC	1 cut(s)	2424
ArsI	GACNNNNNNTTYG	2 cut(s)	1577, 1609
AseI	ATTAAT	1 cut(s)	5879
AsiGI	ACCGGT	1 cut(s)	2791
Asp700I	GAANNNNTTC	3 cut(s)	3486, 3518, 3711
AspLEI	GCGC	6 cut(s)	1159, 1541, 1946, 2667, 2976, 5088
AsuC2I	CCSGG	1 cut(s)	5251
AsuII	TTCGAA	1 cut(s)	1600
AsuNHI	GCTAGC	2 cut(s)	937, 4072
AvaII	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3242, 3327, 4611, 4996
AxyI	CCTNAGG	2 cut(s)	804, 2199
BaeGI	GKGCMC	2 cut(s)	2428, 3810
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BalI	TGGCCA	1 cut(s)	3848
BamHI	GGATCC	1 cut(s)	4432
BanI	GGYRCC	1 cut(s)	2699
BanII	GRGCYC	4 cut(s)	675, 930, 2600, 4713
BarI	GAAGNNNNNNTAC	2 cut(s)	1695, 1727
BauI	CACGAG	1 cut(s)	4365
BbrPI	CACGTG	1 cut(s)	2546
BbsI	GAAGAC	6 cut(s)	143, 185, 332, 1755, 2531, 5703
Bbv12I	GWGCWC	9 cut(s)	675, 930, 1841, 2190, 2428, 2791, 4138, 4688, 4713
BceAI	ACGGC	5 cut(s)	31, 576, 1871, 2222, 2952
BcgI	CGANNNNNNTGC	4 cut(s)	25, 59, 92, 126
BciVI	GTATCC	4 cut(s)	637, 3269, 3740, 5024
BclI	TGATCA	2 cut(s)	4438, 4947
BcnI	CCSGG	1 cut(s)	5251
BcoDI	GTCTC	6 cut(s)	1571, 2260, 2838, 4345, 5210, 6004
BcuI	ACTAGT	1 cut(s)	5789
BfmI	CTRYAG	7 cut(s)	789, 1563, 2306, 3590, 3873, 4029, 5163
BfoI	RGCGCY	1 cut(s)	1160
BfrI	CTTAAG	4 cut(s)	469, 2270, 2477, 2704
BfuAI	ACCTGC	1 cut(s)	2419
BfuI	GTATCC	4 cut(s)	637, 3269, 3740, 5024
BglI	GCCNNNNNGGC	2 cut(s)	315, 5465
BglII	AGATCT	3 cut(s)	716, 2980, 3493
BlpI	GCTNAGC	3 cut(s)	669, 924, 4555
BmcAI	AGTACT	1 cut(s)	3518
Bme18I	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3242, 3327, 4611, 4996
BmrI	ACTGGG	1 cut(s)	1288
BmtI	GCTAGC	2 cut(s)	941, 4076
BmuI	ACTGGG	1 cut(s)	1288
BoxI	GACNNNNGTC	2 cut(s)	147, 2308
BpiI	GAAGAC	6 cut(s)	143, 185, 332, 1755, 2531, 5703
BpmI	CTGGAG	5 cut(s)	1478, 1595, 3840, 4869, 5879
Bpu10I	CCTNAGC	2 cut(s)	342, 3647
Bpu1102I	GCTNAGC	3 cut(s)	669, 924, 4555
Bpu14I	TTCGAA	1 cut(s)	1600
BpuEI	CTTGAG	6 cut(s)	602, 1139, 3518, 3602, 4852, 5234
BpuMI	CCSGG	1 cut(s)	5251
Bsa29I	ATCGAT	1 cut(s)	3966
BsaAI	YACGTR	2 cut(s)	2011, 2546
BsaBI	GATNNNNATC	3 cut(s)	4437, 4989, 5208
BsaHI	GRCGYC	1 cut(s)	2253
BsaJI	CCNNGG	7 cut(s)	47, 399, 1062, 1109, 1455, 1951, 5759
BsaWI	WCCGGW	2 cut(s)	2791, 3924
BsaXI	ACNNNNNCTCC	6 cut(s)	1081, 1111, 2000, 2030, 2778, 2808
Bse118I	RCCGGY	4 cut(s)	202, 314, 2791, 5683
Bse21I	CCTNAGG	2 cut(s)	804, 2199
Bse3DI	GCAATG	7 cut(s)	2031, 2787, 3111, 3330, 3342, 4518, 5081
Bse8I	GATNNNNATC	3 cut(s)	4437, 4989, 5208
BseCI	ATCGAT	1 cut(s)	3966
BseDI	CCNNGG	7 cut(s)	47, 399, 1062, 1109, 1455, 1951, 5759
BseJI	GATNNNNATC	3 cut(s)	4437, 4989, 5208
BseMI	GCAATG	7 cut(s)	2031, 2787, 3111, 3330, 3342, 4518, 5081
BseRI	GAGGAG	2 cut(s)	792, 5547
BseSI	GKGCMC	2 cut(s)	2428, 3810
BseYI	CCCAGC	4 cut(s)	2062, 5178, 5445, 5563
BsgI	GTGCAG	2 cut(s)	2397, 2985
Bsh1236I	CGCG	1 cut(s)	1096
Bsh1285I	CGRYCG	1 cut(s)	4816
BshNI	GGYRCC	1 cut(s)	2699
BshTI	ACCGGT	1 cut(s)	2791
BshVI	ATCGAT	1 cut(s)	3966
BsiEI	CGRYCG	1 cut(s)	4816
BsiHKAI	GWGCWC	9 cut(s)	675, 930, 1841, 2190, 2428, 2791, 4138, 4688, 4713
BsiSI	CCGG	6 cut(s)	203, 315, 2792, 3925, 5250, 5684
BslFI	GGGAC	7 cut(s)	1438, 1934, 2724, 3255, 5809, 5922, 6037
BsmAI	GTCTC	6 cut(s)	1571, 2260, 2838, 4345, 5210, 6004
BsmBI	CGTCTC	1 cut(s)	2260
BsmFI	GGGAC	7 cut(s)	1438, 1934, 2724, 3255, 5809, 5922, 6037
BsmI	GAATGC	3 cut(s)	2814, 2873, 5518
Bsp119I	TTCGAA	1 cut(s)	1600
Bsp1407I	TGTACA	3 cut(s)	1711, 3037, 5611
Bsp1720I	GCTNAGC	3 cut(s)	669, 924, 4555
Bsp19I	CCATGG	1 cut(s)	399
BspDI	ATCGAT	1 cut(s)	3966
BspFNI	CGCG	1 cut(s)	1096
BspHI	TCATGA	2 cut(s)	3715, 4471
BspMAI	CTGCAG	5 cut(s)	1567, 2310, 3594, 3877, 4033
BspMI	ACCTGC	1 cut(s)	2419
BspOI	GCTAGC	2 cut(s)	941, 4076
BspPI	GGATC	9 cut(s)	128, 827, 1678, 3352, 3537, 4427, 4440, 4490, 4856
BspQI	GCTCTTC	3 cut(s)	1829, 3462, 5053
BspT104I	TTCGAA	1 cut(s)	1600
BspT107I	GGYRCC	1 cut(s)	2699
BspTI	CTTAAG	4 cut(s)	469, 2270, 2477, 2704
BsrBI	CCGCTC	2 cut(s)	248, 2077
BsrDI	GCAATG	7 cut(s)	2031, 2787, 3111, 3330, 3342, 4518, 5081
BsrFI	RCCGGY	4 cut(s)	202, 314, 2791, 5683
BsrGI	TGTACA	3 cut(s)	1711, 3037, 5611
BssAI	RCCGGY	4 cut(s)	202, 314, 2791, 5683
BssECI	CCNNGG	7 cut(s)	47, 399, 1062, 1109, 1455, 1951, 5759
BssNAI	GTATAC	1 cut(s)	4170
BssNI	GRCGYC	1 cut(s)	2253
BssSI	CACGAG	1 cut(s)	4365
BssT1I	CCWWGG	3 cut(s)	399, 1062, 5759
Bst1107I	GTATAC	1 cut(s)	4170
Bst2BI	CACGAG	1 cut(s)	4365
Bst6I	CTCTTC	9 cut(s)	9, 1176, 1625, 1829, 2646, 3462, 4149, 5053, 5648
BstACI	GRCGYC	1 cut(s)	2253
BstAFI	CTTAAG	4 cut(s)	469, 2270, 2477, 2704
BstAPI	GCANNNNNTGC	5 cut(s)	224, 233, 1652, 3113, 3872
BstAUI	TGTACA	3 cut(s)	1711, 3037, 5611
BstBAI	YACGTR	2 cut(s)	2011, 2546
BstBI	TTCGAA	1 cut(s)	1600
BstDSI	CCRYGG	2 cut(s)	47, 399
BstEII	GGTNACC	1 cut(s)	5144
BstENI	CCTNNNNNAGG	2 cut(s)	3695, 4526
BstFNI	CGCG	1 cut(s)	1096
BstH2I	RGCGCY	1 cut(s)	1160
BstHHI	GCGC	6 cut(s)	1159, 1541, 1946, 2667, 2976, 5088
BstMAI	GTCTC	6 cut(s)	1571, 2260, 2838, 4345, 5210, 6004
BstMCI	CGRYCG	1 cut(s)	4816
BstNSI	RCATGY	6 cut(s)	1621, 3111, 3733, 3754, 4673, 5833
BstPAI	GACNNNNGTC	2 cut(s)	147, 2308
BstPI	GGTNACC	1 cut(s)	5144
BstSFI	CTRYAG	7 cut(s)	789, 1563, 2306, 3590, 3873, 4029, 5163
BstSLI	GKGCMC	2 cut(s)	2428, 3810
BstSNI	TACGTA	1 cut(s)	2011
BstUI	CGCG	1 cut(s)	1096
BstV2I	GAAGAC	6 cut(s)	143, 185, 332, 1755, 2531, 5703
BstX2I	RGATCY	7 cut(s)	716, 1670, 2980, 3493, 3529, 4432, 4861
BstXI	CCANNNNNNTGG	2 cut(s)	2678, 4398
BstYI	RGATCY	7 cut(s)	716, 1670, 2980, 3493, 3529, 4432, 4861
BstZ17I	GTATAC	1 cut(s)	4170
Bsu15I	ATCGAT	1 cut(s)	3966
Bsu36I	CCTNAGG	2 cut(s)	804, 2199
BsuI	GTATCC	4 cut(s)	637, 3269, 3740, 5024
BsuTUI	ATCGAT	1 cut(s)	3966
BtgI	CCRYGG	2 cut(s)	47, 399
BtsI	GCAGTG	3 cut(s)	1560, 2019, 4513
BveI	ACCTGC	1 cut(s)	2419
CaiI	CAGNNNCTG	3 cut(s)	1652, 5522, 5849
CciI	TCATGA	2 cut(s)	3715, 4471
CfoI	GCGC	6 cut(s)	1159, 1541, 1946, 2667, 2976, 5088
Cfr10I	RCCGGY	4 cut(s)	202, 314, 2791, 5683
ClaI	ATCGAT	1 cut(s)	3966
CseI	GACGC	2 cut(s)	392, 2242
CspAI	ACCGGT	1 cut(s)	2791
CspCI	CAANNNNNGTGG	2 cut(s)	3219, 3254
DraI	TTTAAA	4 cut(s)	513, 1323, 1879, 3297
DraIII	CACNNNGTG	1 cut(s)	1845
DrdI	GACNNNNNNGTC	1 cut(s)	5916
DseDI	GACNNNNNNGTC	1 cut(s)	5916
EaeI	YGGCCR	1 cut(s)	3846
Eam1104I	CTCTTC	9 cut(s)	9, 1176, 1625, 1829, 2646, 3462, 4149, 5053, 5648
EarI	CTCTTC	9 cut(s)	9, 1176, 1625, 1829, 2646, 3462, 4149, 5053, 5648
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	3 cut(s)	673, 928, 4711
Eco105I	TACGTA	1 cut(s)	2011
Eco130I	CCWWGG	3 cut(s)	399, 1062, 5759
Eco147I	AGGCCT	4 cut(s)	1441, 1636, 3398, 5733
Eco24I	GRGCYC	4 cut(s)	675, 930, 2600, 4713
Eco32I	GATATC	1 cut(s)	2089
Eco47I	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3242, 3327, 4611, 4996
Eco53kI	GAGCTC	3 cut(s)	673, 928, 4711
Eco72I	CACGTG	1 cut(s)	2546
Eco81I	CCTNAGG	2 cut(s)	804, 2199
Eco91I	GGTNACC	1 cut(s)	5144
EcoICRI	GAGCTC	3 cut(s)	673, 928, 4711
EcoNI	CCTNNNNNAGG	2 cut(s)	3695, 4526
EcoO109I	RGGNCCY	3 cut(s)	1066, 1452, 4611
EcoO65I	GGTNACC	1 cut(s)	5144
EcoRI	GAATTC	2 cut(s)	158, 2332
EcoRV	GATATC	1 cut(s)	2089
EcoT14I	CCWWGG	3 cut(s)	399, 1062, 5759
EcoT22I	ATGCAT	3 cut(s)	229, 1185, 3113
EcoT38I	GRGCYC	4 cut(s)	675, 930, 2600, 4713
ErhI	CCWWGG	3 cut(s)	399, 1062, 5759
Esp3I	CGTCTC	1 cut(s)	2260
FaqI	GGGAC	7 cut(s)	1438, 1934, 2724, 3255, 5809, 5922, 6037
FauI	CCCGC	1 cut(s)	2070
FauNDI	CATATG	4 cut(s)	2859, 4106, 4746, 5689
FbaI	TGATCA	2 cut(s)	4438, 4947
FblI	GTMKAC	1 cut(s)	4169
FriOI	GRGCYC	4 cut(s)	675, 930, 2600, 4713
FspI	TGCGCA	1 cut(s)	5087
GlaI	GCGC	6 cut(s)	1158, 1540, 1945, 2666, 2975, 5087
GsaI	CCCAGC	4 cut(s)	2066, 5182, 5449, 5567
GsuI	CTGGAG	5 cut(s)	1478, 1595, 3840, 4869, 5879
HaeII	RGCGCY	1 cut(s)	1160
HapII	CCGG	6 cut(s)	203, 315, 2792, 3925, 5250, 5684
HgaI	GACGC	2 cut(s)	392, 2242
HhaI	GCGC	6 cut(s)	1159, 1541, 1946, 2667, 2976, 5088
Hin1I	GRCGYC	1 cut(s)	2253
Hin6I	GCGC	6 cut(s)	1157, 1539, 1944, 2665, 2974, 5086
HinP1I	GCGC	6 cut(s)	1157, 1539, 1944, 2665, 2974, 5086
HincII	GTYRAC	6 cut(s)	1210, 2997, 3756, 4488, 5241, 5755
HindII	GTYRAC	6 cut(s)	1210, 2997, 3756, 4488, 5241, 5755
HpaII	CCGG	6 cut(s)	203, 315, 2792, 3925, 5250, 5684
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	5 cut(s)	1752, 2010, 2545, 4852, 5477
HpySE526I	ACGT	5 cut(s)	1752, 2010, 2545, 4852, 5477
Hsp92I	GRCGYC	1 cut(s)	2253
HspAI	GCGC	6 cut(s)	1157, 1539, 1944, 2665, 2974, 5086
Ksp22I	TGATCA	2 cut(s)	4438, 4947
LguI	GCTCTTC	3 cut(s)	1829, 3462, 5053
MaeII	ACGT	5 cut(s)	1752, 2010, 2545, 4852, 5477
MbiI	CCGCTC	2 cut(s)	248, 2077
MfeI	CAATTG	3 cut(s)	447, 1829, 2625
MflI	RGATCY	7 cut(s)	716, 1670, 2980, 3493, 3529, 4432, 4861
MlsI	TGGCCA	1 cut(s)	3848
MluNI	TGGCCA	1 cut(s)	3848
MmeI	TCCRAC	8 cut(s)	575, 1937, 2511, 3250, 3629, 3684, 3934, 4328
Mox20I	TGGCCA	1 cut(s)	3848
Mph1103I	ATGCAT	3 cut(s)	229, 1185, 3113
MroXI	GAANNNNTTC	3 cut(s)	3486, 3518, 3711
MscI	TGGCCA	1 cut(s)	3848
MslI	CAYNNNNRTG	6 cut(s)	895, 2024, 3335, 4637, 4749, 5274
Msp20I	TGGCCA	1 cut(s)	3848
MspA1I	CMGCKG	5 cut(s)	794, 1190, 1532, 1610, 5522
MspCI	CTTAAG	4 cut(s)	469, 2270, 2477, 2704
MspI	CCGG	6 cut(s)	203, 315, 2792, 3925, 5250, 5684
MunI	CAATTG	3 cut(s)	447, 1829, 2625
Mva1269I	GAATGC	3 cut(s)	2814, 2873, 5518
MvnI	CGCG	1 cut(s)	1096
NciI	CCSGG	1 cut(s)	5251
NcoI	CCATGG	1 cut(s)	399
NdeI	CATATG	4 cut(s)	2859, 4106, 4746, 5689
NheI	GCTAGC	2 cut(s)	937, 4072
NmeAIII	GCCGAG	1 cut(s)	1029
NmuCI	GTSAC	8 cut(s)	688, 965, 1282, 1558, 3390, 5144, 5366, 5785
NsbI	TGCGCA	1 cut(s)	5087
NsiI	ATGCAT	3 cut(s)	229, 1185, 3113
NspI	RCATGY	6 cut(s)	1621, 3111, 3733, 3754, 4673, 5833
NspV	TTCGAA	1 cut(s)	1600
PaeI	GCATGC	3 cut(s)	1621, 3111, 5833
PagI	TCATGA	2 cut(s)	3715, 4471
PceI	AGGCCT	4 cut(s)	1441, 1636, 3398, 5733
PciI	ACATGT	2 cut(s)	3729, 3750
PciSI	GCTCTTC	3 cut(s)	1829, 3462, 5053
PcsI	WCGNNNNNNNCGW	1 cut(s)	4556
PctI	GAATGC	3 cut(s)	2814, 2873, 5518
PdmI	GAANNNNTTC	3 cut(s)	3486, 3518, 3711
PflMI	CCANNNNNTGG	1 cut(s)	3269
PfoI	TCCNGGA	1 cut(s)	2146
PinAI	ACCGGT	1 cut(s)	2791
PmaCI	CACGTG	1 cut(s)	2546
PmlI	CACGTG	1 cut(s)	2546
Ppu21I	YACGTR	2 cut(s)	2011, 2546
PpuMI	RGGWCCY	2 cut(s)	1452, 4611
PscI	ACATGT	2 cut(s)	3729, 3750
PshAI	GACNNNNGTC	2 cut(s)	147, 2308
PshBI	ATTAAT	1 cut(s)	5879
PsiI	TTATAA	4 cut(s)	1004, 1808, 3027, 4086
Psp124BI	GAGCTC	3 cut(s)	675, 930, 4713
Psp5II	RGGWCCY	2 cut(s)	1452, 4611
PspCI	CACGTG	1 cut(s)	2546
PspEI	GGTNACC	1 cut(s)	5144
PspFI	CCCAGC	4 cut(s)	2062, 5178, 5445, 5563
PspPPI	RGGWCCY	2 cut(s)	1452, 4611
PstI	CTGCAG	5 cut(s)	1567, 2310, 3594, 3877, 4033
PstNI	CAGNNNCTG	3 cut(s)	1652, 5522, 5849
PsuI	RGATCY	7 cut(s)	716, 1670, 2980, 3493, 3529, 4432, 4861
PvuII	CAGCTG	3 cut(s)	1190, 1610, 5522
RseI	CAYNNNNRTG	6 cut(s)	895, 2024, 3335, 4637, 4749, 5274
SacI	GAGCTC	3 cut(s)	675, 930, 4713
SapI	GCTCTTC	3 cut(s)	1829, 3462, 5053
ScaI	AGTACT	1 cut(s)	3518
SfcI	CTRYAG	7 cut(s)	789, 1563, 2306, 3590, 3873, 4029, 5163
SfuI	TTCGAA	1 cut(s)	1600
SinI	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3242, 3327, 4611, 4996
SmiMI	CAYNNNNRTG	6 cut(s)	895, 2024, 3335, 4637, 4749, 5274
SnaBI	TACGTA	1 cut(s)	2011
SpeI	ACTAGT	1 cut(s)	5789
SphI	GCATGC	3 cut(s)	1621, 3111, 5833
SseBI	AGGCCT	4 cut(s)	1441, 1636, 3398, 5733
SspI	AATATT	2 cut(s)	624, 2220
SstI	GAGCTC	3 cut(s)	675, 930, 4713
StuI	AGGCCT	4 cut(s)	1441, 1636, 3398, 5733
StyI	CCWWGG	3 cut(s)	399, 1062, 5759
TaiI	ACGT	5 cut(s)	1755, 2013, 2548, 4855, 5480
TaqI	TCGA	6 cut(s)	102, 1600, 2491, 3677, 3966, 4989
TaqII	GACCGA	1 cut(s)	3773
TatI	WGTACW	5 cut(s)	1711, 3037, 3516, 3551, 5611
TauI	GCSGC	5 cut(s)	251, 1817, 3544, 5228, 5843
TseFI	GTSAC	8 cut(s)	688, 965, 1282, 1558, 3390, 5144, 5366, 5785
Tsp45I	GTSAC	8 cut(s)	688, 965, 1282, 1558, 3390, 5144, 5366, 5785
TspGWI	ACGGA	2 cut(s)	2414, 3086
Van91I	CCANNNNNTGG	1 cut(s)	3269
Vha464I	CTTAAG	4 cut(s)	469, 2270, 2477, 2704
VneI	GTGCAC	1 cut(s)	2424
VpaK11BI	GGWCC	8 cut(s)	767, 1452, 2144, 2375, 3242, 3327, 4611, 4996
VspI	ATTAAT	1 cut(s)	5879
XagI	CCTNNNNNAGG	2 cut(s)	3695, 4526
XbaI	TCTAGA	1 cut(s)	856
XceI	RCATGY	6 cut(s)	1621, 3111, 3733, 3754, 4673, 5833
XcmI	CCANNNNNNNNNTGG	2 cut(s)	103, 4751
XmiI	GTMKAC	1 cut(s)	4169
XmnI	GAANNNNTTC	3 cut(s)	3486, 3518, 3711
ZrmI	AGTACT	1 cut(s)	3518
Zsp2I	ATGCAT	3 cut(s)	229, 1185, 3113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.