pycom01g24280

Chromosome region maintenance protein 1 exportin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0009963
Physical Location & Seq
Reverse (-)
21242931 .. 21249382
6452 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2046 bp
ATGGCGGCTGAGAAGCTAAGGGACTTGAGCCAGCCGATTGACGTTGGCCTGCTCGATGCCACCGTCGCCGCCTTCTACGGCACCGGATCTAAGGAGGAGAGGACAGCTGCAGACCAGATATTGAGGGACTTGCAAAACAATCCTGATATGTGGCTCCAAGTTGTGCACATTTTACAGAGCACAAAGAACCTAAACACCAAGTTCTTTGCCTTGCAGGTCTTAGAAGGGGTTATCAAGTACAGGTGGAATGCATTGCCTGTTGAACAGCGAGACGGAATGAAAAATTATATCTCTGATGTCATTGTACAGCTATCAAGTAATGAGGCCTCTTTTCGAATGGAAAGACTTTATGTCAGCAAACTCAATGTTATATTGGTTCAGATTTTAAAGCATGATTGGCCCACTAAATGGCGAAGCTTTATTCCGGATCTTGTATCAGCAGCTAAAACTAGTGAAACCATTTGCGAAAATTGTATGGCCATATTGAAGCTTCTAAGTGAAGAGGTATTTGATTTCTCAAGAGGGGAAATGACACAGTTGAAGATTAAAGAGCTTAAACAATCATTGAACAGTGAGTTTCAACTCATTCATGAGTTATGCTTATATGTACTATCAGCCTCTCAACGAACCGAGCTGATACGTGCAACATTATCCACATTGCATGCTTTCCTCTCATGGATTCCCCTGGGCTATATTTTTGAGTCCCCTTTGCTTGAAACCCTTCTGAAGTTTTTTCCCATGCCTTCATATCGGAATCTTACCCTTCAGTGTCTAACGGAGGTTGCAGCACTTACTTTCGGTGAATTCTATAATGCGCAGTATGTTAAGATGTACAGTATATTCATGGTGCAATTACAGACTATTCTTCCACCCACCACAAACATACCTGAAGCTTACACAAATGGATCTGGCGAGGAACAGGCATTCATTCAGAACTTGGCACTGTTTCTCACTTCGTTTTACAAGGCGCATATCCGTGTTCTTGAAACCACACAAGAGACTATAGCTGCATTGCTGATGGGTCTTGAATATCTTGTAAACATCTCATATGTGGATGACACCGAAGTTTTTAAGGTTTGCTTAGACTATTGGAATGCTTTGGTTTTGGAACTGTTTGAGGCACATCATAATCTGGATAACCCTGCAGCATCTGCCAATATGATGGGGTTGCAGATGAATTTGCTTCCTAGTATGGTTGATGGCATTGGCTCACAACTTTTGCAAAGGCGGCAAATATATGTTGGTATTATGTCAAAGTTGAGGTTGCTCATGATCTGTCGTATGGCTAAGCCAGAAGAGGTTATCATTGTTGAAGATGAGAATGGCAACATTGTTCGTGAGACCTTGAAGGACAATGATGTTCTAGTTCAATATAAGATCATGAGGGAGACGCTGATATATTTGTCACATCTTGACCACGATGATACCGAGAAGCAGATGCTAAAGAAATTAAACAAACAACTGACTGGTGAGGATTGGGCATGGAACAACTTAAACACATTATGCTGGGCAATAGGGTCTATATCTGGTTCCATGATGGAAGAACAGGAAAATAGATTTTTGGTGATGGTCATTCGTGACTTGCTGAACTTGTGTGAAATCATAAAAGGGAAAGATAATAAAGCAGTTATTGCAAGCAACATCATGTATGTTGTCGGACAGTACCCAAGGTTCTTAAGAGCTCATTGGAAGTTCCTAAAGACTGTTGTCAATAAGTTGTTTGAGTTTATGCACGAAACACATCCTGGAGTCCAGGACATGGCCTGCGACACATTCTTGAAAATTGTTCAAAAGTGCAAGCGTAAATTTGTTATTGTACAGGTTGGAGAAAATGAACCATTTGTGTCTGAACTCCTGACAAGCCTGCCGAATACTGTTGGCGATCTTCAGCCTCACCAGATTCATACTTTCTATGAAGCTGTTGGTCATATGATTCAAGCAGAGTCTGATCCCAAGAAGAGAGAAGAATATCTACAGAGATTGATGAGTCTCCCAAATCAGAAATGGGCCGAGATCGATCATAGGGCAAGCACGCGTAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

682

Amino Acids

78.41

Weight (kDa)

5.75

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 37 - 103 2.6e-16 Importin-beta N-terminal domain
Xpo1 PF08389 115 - 258 9e-43 Exportin 1-like protein
CRM1_repeat PF18777 337 - 372 5.5e-18 Chromosome region maintenance or exportin repeat
CRM1_repeat_2 PF18784 409 - 476 1.4e-30 CRM1 / Exportin repeat 2
CRM1_repeat_3 PF18787 490 - 539 2.9e-26 CRM1 / Exportin repeat 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03110 AT5G17020 AT5G17020
fragaria_vesca FvH4_7g33850 FvH4_7g33850
malus_domestica MD01G1234500.v1.1 MD07G1307000.v1.1
prunus_persica Prupe.2G324800_v2.0.a1 Prupe.2G324800_v2.0.a1
pyrus_communis pycom01g24280 pycom07g28000
rosa_chinensis RchiOBHm_Chr1g0383961
rosa_laevigata RLG00000026083
rosa_multiflora Rmu_sc0005139.1_g000024
rosa_roxburghii Rroxscaffold_4G00277100
rosa_rugosa Rorug01G0443900
rosa_samantha Rh1AG469400 Rh1BG427100 Rh1CG439900 Rh1DG459900
rosa_wichuraiana Rw1G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 816
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 2 cut(s) 408, 1759
AccII CGCG 1 cut(s) 2035
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 3 cut(s) 5, 69, 1228
AclWI GGATC 4 cut(s) 94, 435, 913, 1943
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 3 cut(s) 803, 1177, 1805
AcuI CTGAAG 4 cut(s) 746, 749, 909, 1871
AfaI GTAC 6 cut(s) 239, 306, 609, 833, 1664, 1818
AfiI CCNNNNNNNGG 2 cut(s) 408, 1759
AflII CTTAAG 1 cut(s) 1675
AflIII ACRYGT 1 cut(s) 2033
AhdI GACNNNNNGTC 1 cut(s) 350
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 3 cut(s) 684, 1744, 1752
Alw21I GWGCWC 3 cut(s) 168, 182, 1684
Alw26I GTCTC 5 cut(s) 264, 992, 1334, 1382, 1994
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 4 cut(s) 94, 435, 913, 1943
AlwNI CAGNNNCTG 2 cut(s) 1151, 1946
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 6 cut(s) 46, 324, 398, 477, 1761, 2007
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 5 cut(s) 107, 440, 785, 1007, 1145
ApoI RAATTY 3 cut(s) 803, 1177, 1805
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 2 cut(s) 817, 970
AspS9I GGNCC 2 cut(s) 399, 2007
AsuHPI GGTGA 4 cut(s) 812, 1481, 1576, 1886
AsuII TTCGAA 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 1684
BarI GAAGNNNNNNTAC 2 cut(s) 1956, 1988
Bbv12I GWGCWC 3 cut(s) 168, 182, 1684
BbvI GCAGC 5 cut(s) 94, 452, 797, 994, 1157
BccI CCATC 5 cut(s) 1012, 1156, 1193, 1531, 1561
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 3 cut(s) 686, 1746, 1754
BcoDI GTCTC 5 cut(s) 264, 992, 1334, 1382, 1994
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 3 cut(s) 450, 1188, 1364
BfmI CTRYAG 4 cut(s) 108, 1002, 1143, 1973
BfrI CTTAAG 1 cut(s) 1675
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 8 cut(s) 6, 69, 108, 441, 786, 1008, 1146, 1229
BlpI GCTNAGC 1 cut(s) 1287
BlsI GCNGC 8 cut(s) 7, 70, 109, 442, 787, 1009, 1147, 1230
Bme1390I CCNGG 3 cut(s) 686, 1746, 1754
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 399, 2007
BmiI GGNNCC 3 cut(s) 82, 155, 1531
BmrFI CCNGG 3 cut(s) 686, 1746, 1754
BmsI GCATC 3 cut(s) 46, 1157, 1428
BoxI GACNNNNGTC 1 cut(s) 1706
BpmI CTGGAG 1 cut(s) 1767
Bpu10I CCTNAGC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 1287
Bpu14I TTCGAA 1 cut(s) 334
BpuEI CTTGAG 2 cut(s) 46, 502
Bsa29I ATCGAT 1 cut(s) 2016
BsaAI YACGTR 1 cut(s) 641
BsaI GGTCTC 1 cut(s) 1334
BsaJI CCNNGG 3 cut(s) 684, 685, 1667
BsaWI WCCGGW 2 cut(s) 83, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 1759
Bse1I ACTGG 1 cut(s) 1471
Bse3DI GCAATG 3 cut(s) 251, 656, 1010
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 3 cut(s) 686, 1746, 1754
BseCI ATCGAT 1 cut(s) 2016
BseDI CCNNGG 3 cut(s) 684, 685, 1667
BseGI GGATG 2 cut(s) 1060, 1741
BseLI CCNNNNNNNGG 2 cut(s) 408, 1759
BseMI GCAATG 3 cut(s) 251, 656, 1010
BseNI ACTGG 1 cut(s) 1471
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 5 cut(s) 94, 452, 797, 994, 1157
BseYI CCCAGC 1 cut(s) 1506
Bsh1236I CGCG 1 cut(s) 2035
BshFI GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
BshNI GGYRCC 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 2016
BsiHKAI GWGCWC 3 cut(s) 168, 182, 1684
BsiSI CCGG 2 cut(s) 84, 425
BslFI GGGAC 3 cut(s) 35, 140, 688
BslI CCNNNNNNNGG 2 cut(s) 408, 1759
BsmAI GTCTC 5 cut(s) 264, 992, 1334, 1382, 1994
BsmBI CGTCTC 2 cut(s) 264, 1382
BsmFI GGGAC 3 cut(s) 35, 140, 688
BsmI GAATGC 3 cut(s) 253, 923, 1099
BsnI GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
Bso31I GGTCTC 1 cut(s) 1334
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 3 cut(s) 168, 182, 1684
Bsp13I TCCGGA 1 cut(s) 424
Bsp1407I TGTACA 3 cut(s) 304, 831, 1816
Bsp143I GATC 9 cut(s) 86, 427, 905, 1272, 1377, 1882, 1948, 2013, 2017
Bsp1720I GCTNAGC 1 cut(s) 1287
BspACI CCGC 3 cut(s) 5, 69, 1228
BspANI GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
BspDI ATCGAT 1 cut(s) 2016
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 1 cut(s) 2035
BspHI TCATGA 3 cut(s) 589, 1269, 1380
BspLI GGNNCC 3 cut(s) 82, 155, 1531
BspMAI CTGCAG 2 cut(s) 112, 1147
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 4 cut(s) 94, 435, 913, 1943
BspT104I TTCGAA 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 1675
BspTNI GGTCTC 1 cut(s) 1334
BsrDI GCAATG 3 cut(s) 251, 656, 1010
BsrGI TGTACA 3 cut(s) 304, 831, 1816
BsrI ACTGG 1 cut(s) 1471
BssECI CCNNGG 3 cut(s) 684, 685, 1667
BssMI GATC 9 cut(s) 86, 427, 905, 1272, 1377, 1882, 1948, 2013, 2017
BssT1I CCWWGG 1 cut(s) 1667
Bst2UI CCWGG 3 cut(s) 686, 1746, 1754
Bst4CI ACNGT 9 cut(s) 64, 537, 572, 836, 945, 1113, 1662, 1705, 1876
Bst6I CTCTTC 3 cut(s) 495, 1290, 1952
BstAFI CTTAAG 1 cut(s) 1675
BstAPI GCANNNNNTGC 2 cut(s) 1151, 1631
BstAUI TGTACA 3 cut(s) 304, 831, 1816
BstBAI YACGTR 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 9 cut(s) 32, 50, 663, 1636, 1765, 1799, 1865, 2029, 2033
BstDEI CTNAG 7 cut(s) 9, 17, 90, 220, 494, 1081, 1287
BstF5I GGATG 2 cut(s) 1060, 1741
BstFNI CGCG 1 cut(s) 2035
BstHHI GCGC 2 cut(s) 817, 970
BstKTI GATC 9 cut(s) 89, 430, 908, 1275, 1380, 1885, 1951, 2016, 2020
BstMAI GTCTC 5 cut(s) 264, 992, 1334, 1382, 1994
BstMBI GATC 9 cut(s) 86, 427, 905, 1272, 1377, 1882, 1948, 2013, 2017
BstMWI GCNNNNNNNGC 5 cut(s) 65, 397, 1151, 1228, 1631
BstNI CCWGG 3 cut(s) 686, 1746, 1754
BstNSI RCATGY 1 cut(s) 665
BstPAI GACNNNNGTC 1 cut(s) 1706
BstSCI CCNGG 3 cut(s) 684, 1744, 1752
BstSFI CTRYAG 4 cut(s) 108, 1002, 1143, 1973
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 2035
BstV1I GCAGC 5 cut(s) 94, 452, 797, 994, 1157
BstX2I RGATCY 3 cut(s) 86, 427, 905
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 3 cut(s) 86, 427, 905
Bsu15I ATCGAT 1 cut(s) 2016
BsuRI GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
BsuTUI ATCGAT 1 cut(s) 2016
BtsCI GGATG 2 cut(s) 1060, 1741
BtsIMutI CAGTG 3 cut(s) 577, 773, 941
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 9 cut(s) 32, 50, 663, 1636, 1765, 1799, 1865, 2029, 2033
CaiI CAGNNNCTG 2 cut(s) 1151, 1946
CciI TCATGA 3 cut(s) 589, 1269, 1380
CfoI GCGC 2 cut(s) 817, 970
Cfr13I GGNCC 2 cut(s) 399, 2007
ClaI ATCGAT 1 cut(s) 2016
CseI GACGC 1 cut(s) 1399
Csp6I GTAC 6 cut(s) 238, 305, 608, 832, 1663, 1817
CviQI GTAC 6 cut(s) 238, 305, 608, 832, 1663, 1817
DdeI CTNAG 7 cut(s) 9, 17, 90, 220, 494, 1081, 1287
DpnI GATC 9 cut(s) 88, 429, 907, 1274, 1379, 1884, 1950, 2015, 2019
DpnII GATC 9 cut(s) 86, 427, 905, 1272, 1377, 1882, 1948, 2013, 2017
DraI TTTAAA 1 cut(s) 387
DriI GACNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 3 cut(s) 495, 1290, 1952
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 3 cut(s) 495, 1290, 1952
Ecl136II GAGCTC 1 cut(s) 1682
Eco130I CCWWGG 1 cut(s) 1667
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 1684
Eco31I GGTCTC 1 cut(s) 1334
Eco53kI GAGCTC 1 cut(s) 1682
Eco57I CTGAAG 4 cut(s) 746, 749, 909, 1871
EcoICRI GAGCTC 1 cut(s) 1682
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 3 cut(s) 684, 1744, 1752
EcoT14I CCWWGG 1 cut(s) 1667
EcoT22I ATGCAT 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 1684
ErhI CCWWGG 1 cut(s) 1667
Esp3I CGTCTC 2 cut(s) 264, 1382
FalI AAGNNNNNCTT 2 cut(s) 1064, 1096
FaqI GGGAC 3 cut(s) 35, 140, 688
FauNDI CATATG 2 cut(s) 1048, 1929
Fnu4HI GCNGC 8 cut(s) 6, 69, 108, 441, 786, 1008, 1146, 1229
FokI GGATG 2 cut(s) 1067, 1728
FriOI GRGCYC 1 cut(s) 1684
Fsp4HI GCNGC 8 cut(s) 6, 69, 108, 441, 786, 1008, 1146, 1229
FspBI CTAG 3 cut(s) 450, 1188, 1364
FspI TGCGCA 1 cut(s) 816
GlaI GCGC 2 cut(s) 816, 969
GluI GCNGC 8 cut(s) 6, 69, 108, 441, 786, 1008, 1146, 1229
GsaI CCCAGC 1 cut(s) 1510
GsuI CTGGAG 1 cut(s) 1767
HaeIII GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
HapII CCGG 2 cut(s) 84, 425
HgaI GACGC 1 cut(s) 1399
HhaI GCGC 2 cut(s) 817, 970
Hin6I GCGC 2 cut(s) 815, 968
HinP1I GCGC 2 cut(s) 815, 968
HindIII AAGCTT 3 cut(s) 415, 488, 891
HinfI GANTC 8 cut(s) 679, 701, 754, 1749, 1900, 1933, 1943, 1987
HpaII CCGG 2 cut(s) 84, 425
HphI GGTGA 4 cut(s) 812, 1481, 1576, 1886
Hpy166II GTNNAC 2 cut(s) 166, 1039
Hpy188I TCNGA 9 cut(s) 295, 381, 726, 753, 933, 1658, 1849, 1948, 2001
Hpy8I GTNNAC 2 cut(s) 166, 1039
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 6 cut(s) 82, 218, 731, 753, 773, 1342
HpyCH4III ACNGT 9 cut(s) 64, 537, 572, 836, 945, 1113, 1662, 1705, 1876
HpyCH4IV ACGT 2 cut(s) 42, 640
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 397, 1151, 1228, 1631
HpyF3I CTNAG 7 cut(s) 9, 17, 90, 220, 494, 1081, 1287
HpySE526I ACGT 2 cut(s) 42, 640
HspAI GCGC 2 cut(s) 815, 968
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 9 cut(s) 86, 427, 905, 1272, 1377, 1882, 1948, 2013, 2017
LmnI GCTCC 1 cut(s) 159
Lsp1109I GCAGC 5 cut(s) 94, 452, 797, 994, 1157
LweI GCATC 3 cut(s) 46, 1157, 1428
MaeI CTAG 3 cut(s) 450, 1188, 1364
MaeII ACGT 2 cut(s) 42, 640
MaeIII GTNAC 2 cut(s) 1404, 1577
MalI GATC 9 cut(s) 88, 429, 907, 1274, 1379, 1884, 1950, 2015, 2019
MboI GATC 9 cut(s) 86, 427, 905, 1272, 1377, 1882, 1948, 2013, 2017
MboII GAAGA 9 cut(s) 512, 553, 857, 1307, 1325, 1553, 1877, 1969, 1976
MflI RGATCY 3 cut(s) 86, 427, 905
MhlI GDGCHC 3 cut(s) 168, 182, 1684
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 8 cut(s) 283, 469, 803, 851, 1177, 1448, 1782, 1805
MluI ACGCGT 1 cut(s) 2033
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 4 cut(s) 710, 1758, 1952, 1996
MmeI TCCRAC 2 cut(s) 1636, 1804
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 253
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 720
MscI TGGCCA 1 cut(s) 479
MseI TTAA 8 cut(s) 386, 546, 555, 825, 1071, 1451, 1493, 1676
MslI CAYNNNNRTG 1 cut(s) 975
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 1675
MspI CCGG 2 cut(s) 84, 425
MspR9I CCNGG 3 cut(s) 686, 1746, 1754
Mva1269I GAATGC 3 cut(s) 253, 923, 1099
MvaI CCWGG 3 cut(s) 686, 1746, 1754
MvnI CGCG 1 cut(s) 2035
MwoI GCNNNNNNNGC 5 cut(s) 65, 397, 1151, 1228, 1631
NdeI CATATG 2 cut(s) 1048, 1929
NdeII GATC 9 cut(s) 86, 427, 905, 1272, 1377, 1882, 1948, 2013, 2017
NlaIV GGNNCC 3 cut(s) 82, 155, 1531
NmeAIII GCCGAG 1 cut(s) 2035
NmuCI GTSAC 2 cut(s) 1404, 1577
NsbI TGCGCA 1 cut(s) 816
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 1 cut(s) 665
NspV TTCGAA 1 cut(s) 334
PaeI GCATGC 1 cut(s) 665
PagI TCATGA 3 cut(s) 589, 1269, 1380
PasI CCCWGGG 1 cut(s) 685
PceI AGGCCT 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 1425
PctI GAATGC 3 cut(s) 253, 923, 1099
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 4 cut(s) 679, 754, 1900, 1933
PflMI CCANNNNNTGG 2 cut(s) 408, 1759
PfoI TCCNGGA 2 cut(s) 1744, 1752
PkrI GCNGC 8 cut(s) 7, 70, 109, 442, 787, 1009, 1147, 1230
PleI GAGTC 4 cut(s) 709, 1757, 1951, 1995
PpsI GAGTC 4 cut(s) 709, 1757, 1951, 1995
Ppu21I YACGTR 1 cut(s) 641
PshAI GACNNNNGTC 1 cut(s) 1706
Psp124BI GAGCTC 1 cut(s) 1684
Psp6I CCWGG 3 cut(s) 684, 1744, 1752
PspFI CCCAGC 1 cut(s) 1506
PspGI CCWGG 3 cut(s) 684, 1744, 1752
PspN4I GGNNCC 3 cut(s) 82, 155, 1531
PspPI GGNCC 2 cut(s) 399, 2007
PsrI GAACNNNNNNTAC 2 cut(s) 1655, 1687
PstI CTGCAG 2 cut(s) 112, 1147
PstNI CAGNNNCTG 2 cut(s) 1151, 1946
PsuI RGATCY 3 cut(s) 86, 427, 905
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 6 cut(s) 239, 306, 609, 833, 1664, 1818
RsaNI GTAC 6 cut(s) 238, 305, 608, 832, 1663, 1817
RseI CAYNNNNRTG 1 cut(s) 975
SacI GAGCTC 1 cut(s) 1684
SaqAI TTAA 8 cut(s) 386, 546, 555, 825, 1071, 1451, 1493, 1676
SatI GCNGC 8 cut(s) 6, 69, 108, 441, 786, 1008, 1146, 1229
Sau3AI GATC 9 cut(s) 86, 427, 905, 1272, 1377, 1882, 1948, 2013, 2017
Sau96I GGNCC 2 cut(s) 399, 2007
SchI GAGTC 4 cut(s) 710, 1758, 1952, 1996
ScrFI CCNGG 3 cut(s) 686, 1746, 1754
SduI GDGCHC 3 cut(s) 168, 182, 1684
SfaNI GCATC 3 cut(s) 46, 1157, 1428
SfcI CTRYAG 4 cut(s) 108, 1002, 1143, 1973
SfuI TTCGAA 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 3 cut(s) 25, 517, 1675
SmoI CTYRAG 3 cut(s) 25, 517, 1675
SpeI ACTAGT 1 cut(s) 449
SphI GCATGC 1 cut(s) 665
Sse9I AATT 8 cut(s) 283, 469, 803, 851, 1177, 1448, 1782, 1805
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 3 cut(s) 5, 69, 1228
SspMI CTAG 3 cut(s) 450, 1188, 1364
SstI GAGCTC 1 cut(s) 1684
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 3 cut(s) 684, 1744, 1752
StyI CCWWGG 1 cut(s) 1667
TaaI ACNGT 9 cut(s) 64, 537, 572, 836, 945, 1113, 1662, 1705, 1876
TaiI ACGT 2 cut(s) 45, 643
TaqI TCGA 3 cut(s) 54, 334, 2016
TasI AATT 8 cut(s) 283, 469, 803, 851, 1177, 1448, 1782, 1805
TatI WGTACW 5 cut(s) 237, 304, 607, 831, 1816
TauI GCSGC 3 cut(s) 8, 71, 1231
TfiI GAWTC 4 cut(s) 679, 754, 1900, 1933
Tru1I TTAA 8 cut(s) 386, 546, 555, 825, 1071, 1451, 1493, 1676
Tru9I TTAA 8 cut(s) 386, 546, 555, 825, 1071, 1451, 1493, 1676
TscAI CASTG 3 cut(s) 577, 773, 948
TseFI GTSAC 2 cut(s) 1404, 1577
TseI GCWGC 5 cut(s) 107, 440, 785, 1007, 1145
Tsp45I GTSAC 2 cut(s) 1404, 1577
TspDTI ATGAA 9 cut(s) 293, 578, 735, 832, 916, 1190, 1848, 1892, 1929
TspGWI ACGGA 3 cut(s) 288, 791, 965
TspRI CASTG 3 cut(s) 577, 773, 948
Van91I CCANNNNNTGG 2 cut(s) 408, 1759
Vha464I CTTAAG 1 cut(s) 1675
VneI GTGCAC 1 cut(s) 164
XapI RAATTY 3 cut(s) 803, 1177, 1805
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 2001
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 3 cut(s) 450, 1188, 1364
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.