Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0018897

Physical Location & Seq

Genomic Coordinates Forward (+)

2709611 .. 2714177

Gene Structure 4567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTAGTGATTCCAACGGCATCTTAGGTTCCGAGTCTTCCGTCAAAATTCCGACAATAAAGTACACCAAGCTCTTCATCAATGGAGAATTCGTTGATTCCGTTTCAGGGGAGGTGATAGCTAGGGTTGCAGAAGCAGATAAGGAAGATGTTGATTTGGCTGTCGAGGCTGCACGTGCTGCCTTCGAAAATGGCCCTTGGCCTCGCTTGCCCGGCAGTGAGAGAGGAAGAATAATGCTGAAATTTGCGGACTTAATTGACCAACATGTAGAAGAACTAGCCAGCCTGGATACCGTCAATGCCGGAAATTTGTTCGGCAATGGCAAGATCGCAGGCATACCTTCTGTGGCGAACTCTCTCCGTTATTATGCCGGCGCAGCCGACAAAATCCACGGGGAGGTGCTCAAAATGTCGCGTGATTTTCACGGGTATACGTTGCTCGAACCCATCGGTGTTGTAGGACACATCATTCCCTGGAATTTCCCGAGCACCCTGTTTTTCTCGAAGGTCAGCCCTTGCTTAGCCGCCGGGTGCACCATGGTCGTCAAACCTGCCGAGCAGACACCTCTATCGGCGATTTACTACGCTCATCTAGCTAAGCTGGCTGGTGTTCCTGATGGAGTGCTCAATGTCATAACTGGATTTGGACAGACTGCTGGTGCTGCCATCAGCCATCATATGGACATAGACAAGGTCACTTTTACTGGTTCGACGGAGGTAGGGCGTGAAGTTATGCAGGCAGCAGCAAAAAGCAATCTAAAACAAGTTTCACTCGAACTAGGAGGCAAGTCACCCCTTGTGATCTTTGATGATGCTGATATAAATATGGCTGTTGAGCTGGCTCTCTTGGGAATCTTTTACAACAAGGGAGAAATTTGTGTGGCAAGTTCGCGTGTTTACGTTCAAGACGGAATTTATGATGAATTTGTGAAGAAGTTAGAAGACAAGGTGAAAACTTGGGTAGTTGGGGATCCTTTTCGATCGATCCTAATGTTCGTCAAGGACCCCAGGTTGATAAGCAGCAGTTTGATAAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

347

Amino Acids

37.29

Weight (kDa)

5.45

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018897)

Species	Orthologous Gene IDs
malus_domestica	MD02G1049000.v1.1
pyrus_communis	pycom02g04110 pycom02g04140
rosa_chinensis	RchiOBHm_Chr3g0491961
rosa_multiflora	Rmu_co8011570.1_g000001 Rmu_sc0004195.1_g000001
rosa_samantha	Rh2AG056100 Rh2BG054700 Rh2CG057000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	2 cut(s)	415, 892
AciI	CCGC	2 cut(s)	248, 525
AclWI	GGATC	3 cut(s)	965, 978, 979
AcsI	RAATTY	8 cut(s)	48, 89, 242, 307, 478, 873, 912, 923
AcvI	CACGTG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	108, 397, 679
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	905
AjnI	CCWGG	3 cut(s)	285, 473, 1007
AluBI	AGCT	5 cut(s)	73, 122, 596, 601, 838
AluI	AGCT	5 cut(s)	73, 122, 596, 601, 838
Alw21I	GWGCWC	4 cut(s)	405, 491, 536, 627
Alw44I	GTGCAC	1 cut(s)	532
AlwI	GGATC	3 cut(s)	965, 978, 979
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	2 cut(s)	193, 200
ApaLI	GTGCAC	1 cut(s)	532
ApeKI	GCWGC	7 cut(s)	170, 179, 377, 662, 740, 743, 1020
ApoI	RAATTY	8 cut(s)	48, 89, 242, 307, 478, 873, 912, 923
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	194, 1003
AsuC2I	CCSGG	2 cut(s)	213, 529
AsuHPI	GGTGA	3 cut(s)	127, 783, 961
AsuII	TTCGAA	1 cut(s)	186
AvaI	CYCGRG	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	1003
BaeGI	GKGCMC	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	970
BbrPI	CACGTG	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	30, 948
Bbv12I	GWGCWC	4 cut(s)	405, 491, 536, 627
BbvI	GCAGC	7 cut(s)	157, 166, 389, 649, 752, 755, 1032
BccI	CCATC	4 cut(s)	455, 611, 674, 681
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BciT130I	CCWGG	3 cut(s)	287, 475, 1009
BciVI	GTATCC	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	213, 529
BfaI	CTAG	5 cut(s)	6, 123, 278, 593, 779
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	8 cut(s)	171, 180, 378, 525, 663, 741, 744, 1021
BlpI	GCTNAGC	2 cut(s)	520, 597
BlsI	GCNGC	8 cut(s)	172, 181, 379, 526, 664, 742, 745, 1022
Bme1390I	CCNGG	5 cut(s)	213, 287, 475, 529, 1009
Bme18I	GGWCC	1 cut(s)	1003
BmeT110I	CYCGRG	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	194, 1003
BmiI	GGNNCC	3 cut(s)	31, 972, 1005
BmrFI	CCNGG	5 cut(s)	213, 287, 475, 529, 1009
BmsI	GCATC	2 cut(s)	30, 802
BpiI	GAAGAC	2 cut(s)	30, 948
Bpu1102I	GCTNAGC	2 cut(s)	520, 597
Bpu14I	TTCGAA	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	213, 529
Bsa29I	ATCGAT	1 cut(s)	983
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	5 cut(s)	197, 391, 473, 537, 1007
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 397, 679
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	643, 709
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	3 cut(s)	287, 475, 1009
BseCI	ATCGAT	1 cut(s)	983
BseDI	CCNNGG	5 cut(s)	197, 391, 473, 537, 1007
BseLI	CCNNNNNNNGG	3 cut(s)	108, 397, 679
BseMI	GCAATG	1 cut(s)	325
BseNI	ACTGG	2 cut(s)	643, 709
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	7 cut(s)	157, 166, 389, 649, 752, 755, 1032
BsgI	GTGCAG	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	415, 892
Bsh1285I	CGRYCG	1 cut(s)	983
BshFI	GGCC	2 cut(s)	195, 202
BshVI	ATCGAT	1 cut(s)	983
BsiEI	CGRYCG	1 cut(s)	983
BsiHKAI	GWGCWC	4 cut(s)	405, 491, 536, 627
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	4 cut(s)	213, 303, 372, 528
BslI	CCNNNNNNNGG	3 cut(s)	108, 397, 679
BsnI	GGCC	2 cut(s)	195, 202
BsoBI	CYCGRG	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	4 cut(s)	405, 491, 536, 627
Bsp143I	GATC	5 cut(s)	327, 801, 970, 980, 984
Bsp1720I	GCTNAGC	2 cut(s)	520, 597
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	2 cut(s)	248, 525
BspANI	GGCC	2 cut(s)	195, 202
BspDI	ATCGAT	1 cut(s)	983
BspFNI	CGCG	2 cut(s)	415, 892
BspLI	GGNNCC	3 cut(s)	31, 972, 1005
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	3 cut(s)	965, 978, 979
BspQI	GCTCTTC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	643, 709
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	5 cut(s)	197, 391, 473, 537, 1007
BssMI	GATC	5 cut(s)	327, 801, 970, 980, 984
BssNAI	GTATAC	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	197, 537
Bst1107I	GTATAC	1 cut(s)	432
Bst2UI	CCWGG	3 cut(s)	287, 475, 1009
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	7 cut(s)	209, 283, 334, 373, 603, 738, 840
BstDEI	CTNAG	3 cut(s)	25, 520, 597
BstDSI	CCRYGG	2 cut(s)	391, 537
BstFNI	CGCG	2 cut(s)	415, 892
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	5 cut(s)	330, 804, 973, 983, 987
BstMBI	GATC	5 cut(s)	327, 801, 970, 980, 984
BstMCI	CGRYCG	1 cut(s)	983
BstNI	CCWGG	3 cut(s)	287, 475, 1009
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	5 cut(s)	211, 285, 473, 527, 1007
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	2 cut(s)	415, 892
BstV1I	GCAGC	7 cut(s)	157, 166, 389, 649, 752, 755, 1032
BstV2I	GAAGAC	2 cut(s)	30, 948
BstX2I	RGATCY	1 cut(s)	970
BstYI	RGATCY	1 cut(s)	970
BstZ17I	GTATAC	1 cut(s)	432
Bsu15I	ATCGAT	1 cut(s)	983
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	195, 202
BsuTUI	ATCGAT	1 cut(s)	983
BtgI	CCRYGG	2 cut(s)	391, 537
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	7 cut(s)	209, 283, 334, 373, 603, 738, 840
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	194, 1003
ClaI	ATCGAT	1 cut(s)	983
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	266, 538
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	25, 520, 597
DpnI	GATC	5 cut(s)	329, 803, 972, 982, 986
DpnII	GATC	5 cut(s)	327, 801, 970, 980, 984
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	197, 537
Eco47I	GGWCC	1 cut(s)	1003
Eco72I	CACGTG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	1003
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	3 cut(s)	285, 473, 1007
EcoT14I	CCWWGG	2 cut(s)	197, 537
ErhI	CCWWGG	2 cut(s)	197, 537
FaeI	CATG	2 cut(s)	269, 541
FatI	CATG	2 cut(s)	265, 537
FauNDI	CATATG	1 cut(s)	678
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	8 cut(s)	171, 180, 378, 525, 663, 741, 744, 1021
Fsp4HI	GCNGC	8 cut(s)	171, 180, 378, 525, 663, 741, 744, 1021
FspBI	CTAG	5 cut(s)	6, 123, 278, 593, 779
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	8 cut(s)	171, 180, 378, 525, 663, 741, 744, 1021
HaeIII	GGCC	2 cut(s)	195, 202
HapII	CCGG	4 cut(s)	213, 303, 372, 528
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	269, 541
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HinfI	GANTC	4 cut(s)	11, 35, 98, 852
HpaII	CCGG	4 cut(s)	213, 303, 372, 528
HphI	GGTGA	3 cut(s)	127, 783, 961
Hpy166II	GTNNAC	4 cut(s)	66, 432, 534, 898
Hpy188I	TCNGA	2 cut(s)	34, 54
Hpy188III	TCNNGA	4 cut(s)	484, 502, 614, 905
Hpy8I	GTNNAC	4 cut(s)	66, 432, 534, 898
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	3 cut(s)	193, 351, 499
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	3 cut(s)	175, 434, 900
HpyCH4V	TGCA	4 cut(s)	131, 173, 534, 736
HpyF3I	CTNAG	3 cut(s)	25, 520, 597
HpySE526I	ACGT	3 cut(s)	175, 434, 900
Hsp92II	CATG	2 cut(s)	269, 541
HspAI	GCGC	1 cut(s)	375
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	5 cut(s)	327, 801, 970, 980, 984
LguI	GCTCTTC	1 cut(s)	80
Lsp1109I	GCAGC	7 cut(s)	157, 166, 389, 649, 752, 755, 1032
LweI	GCATC	2 cut(s)	30, 802
MaeI	CTAG	5 cut(s)	6, 123, 278, 593, 779
MaeII	ACGT	3 cut(s)	175, 434, 900
MaeIII	GTNAC	2 cut(s)	694, 789
MalI	GATC	5 cut(s)	329, 803, 972, 982, 986
MboI	GATC	5 cut(s)	327, 801, 970, 980, 984
MboII	GAAGA	7 cut(s)	30, 67, 158, 240, 284, 943, 953
MflI	RGATCY	1 cut(s)	970
MhlI	GDGCHC	4 cut(s)	405, 491, 536, 627
MluCI	AATT	9 cut(s)	48, 89, 242, 255, 307, 478, 873, 912, 923
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	39, 77
MnlI	CCTC	8 cut(s)	106, 160, 213, 218, 391, 576, 709, 776
MroNI	GCCGGC	1 cut(s)	371
MseI	TTAA	2 cut(s)	254, 1039
MspI	CCGG	4 cut(s)	213, 303, 372, 528
MspR9I	CCNGG	5 cut(s)	213, 287, 475, 529, 1009
MvaI	CCWGG	3 cut(s)	287, 475, 1009
MvnI	CGCG	2 cut(s)	415, 892
NaeI	GCCGGC	1 cut(s)	373
NciI	CCSGG	2 cut(s)	213, 529
NcoI	CCATGG	1 cut(s)	537
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	5 cut(s)	327, 801, 970, 980, 984
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	269, 541
NlaIV	GGNNCC	3 cut(s)	31, 972, 1005
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	2 cut(s)	694, 789
NspI	RCATGY	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	186
PciI	ACATGT	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	11, 98, 852
PflFI	GACNNNGTC	1 cut(s)	692
PflMI	CCANNNNNTGG	1 cut(s)	679
PkrI	GCNGC	8 cut(s)	172, 181, 379, 526, 664, 742, 745, 1022
Ple19I	CGATCG	1 cut(s)	983
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	1003
PscI	ACATGT	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	1003
Psp6I	CCWGG	3 cut(s)	285, 473, 1007
PspCI	CACGTG	1 cut(s)	176
PspGI	CCWGG	3 cut(s)	285, 473, 1007
PspN4I	GGNNCC	3 cut(s)	31, 972, 1005
PspPI	GGNCC	2 cut(s)	194, 1003
PspPPI	RGGWCCY	1 cut(s)	1003
PsuI	RGATCY	1 cut(s)	970
PsyI	GACNNNGTC	1 cut(s)	692
PvuI	CGATCG	1 cut(s)	983
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	254, 1039
SatI	GCNGC	8 cut(s)	171, 180, 378, 525, 663, 741, 744, 1021
Sau3AI	GATC	5 cut(s)	327, 801, 970, 980, 984
Sau96I	GGNCC	2 cut(s)	194, 1003
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	5 cut(s)	213, 287, 475, 529, 1009
SduI	GDGCHC	4 cut(s)	405, 491, 536, 627
SfaNI	GCATC	2 cut(s)	30, 802
SfuI	TTCGAA	1 cut(s)	186
SinI	GGWCC	1 cut(s)	1003
Sse9I	AATT	9 cut(s)	48, 89, 242, 255, 307, 478, 873, 912, 923
SsiI	CCGC	2 cut(s)	248, 525
SspMI	CTAG	5 cut(s)	6, 123, 278, 593, 779
StyD4I	CCNGG	5 cut(s)	211, 285, 473, 527, 1007
StyI	CCWWGG	2 cut(s)	197, 537
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	3 cut(s)	178, 437, 903
TaqI	TCGA	8 cut(s)	165, 186, 441, 503, 710, 774, 979, 983
TasI	AATT	9 cut(s)	48, 89, 242, 255, 307, 478, 873, 912, 923
TatI	WGTACW	1 cut(s)	63
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	3 cut(s)	11, 98, 852
Tru1I	TTAA	2 cut(s)	254, 1039
Tru9I	TTAA	2 cut(s)	254, 1039
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	694, 789
TseI	GCWGC	7 cut(s)	170, 179, 377, 662, 740, 743, 1020
Tsp45I	GTSAC	2 cut(s)	694, 789
TspDTI	ATGAA	2 cut(s)	67, 936
TspGWI	ACGGA	5 cut(s)	31, 91, 350, 728, 924
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	692
Van91I	CCANNNNNTGG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	1003
XapI	RAATTY	8 cut(s)	48, 89, 242, 307, 478, 873, 912, 923
XceI	RCATGY	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	5 cut(s)	6, 123, 278, 593, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.