Rh2BG054700

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018897
Physical Location & Seq
Forward (+)
3967500 .. 3973025
5526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG054700.1

Sequence Viewer

Length: 537 bp
ATGGAGAGTATGCCAATTATAGTGGCAGACATCAAGGCAGAGCCAATAGGGAGGCTTTCGACGCTAAAGCGGCTCCAAGTGGAGTTCCCTCCGTCAGCGAGAAGTAAAACATTTGAGACGATCGATCCAAGAACAGGGGAGGTGACAACCAGAGTTGCAGAGGGGGATACGGAAGACGTGGATTTGGCCGTGAAAACTGCACGCGCTGCCTTTGACCATGGCCTCTGGCCTCGCTTGCCCGGCGTTGAGAGGAGAAAGATCATGATGAAGTTTTCGGACTTGATTGATGAACACACAGAAGAACTAGCCGAGTTGGATACAGTTGATGCGGGGAAGTTGTTCAGTTTTGGCAAAGCCGCAGACATACCTCAGGTAGCACAAACTATACGTTACTATGCGGGTGCAGCTGATAAAATTCATGGAGAGGTGCTCAAAATGTCGCGCGAGTTTCAAGCTTATACTTTACTCGAACCAATTGGTGTTGTGGGACACATCATTCCGGCAGTGGAATTTTCCGAGCACCATGTTATCTGTTAA

Protein Analysis

178

Amino Acids

19.77

Weight (kDa)

5.26

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 34 - 167 1.4e-32 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018897)

Species Orthologous Gene IDs
malus_domestica MD02G1049000.v1.1
pyrus_communis pycom02g04110 pycom02g04140
rosa_chinensis RchiOBHm_Chr3g0491961
rosa_multiflora Rmu_co8011570.1_g000001 Rmu_sc0004195.1_g000001
rosa_samantha Rh2AG056100 Rh2BG054700 Rh2CG057000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 204, 442, 444
AciI CCGC 4 cut(s) 70, 329, 357, 398
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 414, 509
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 452
AjiI CACGTC 1 cut(s) 178
AluBI AGCT 2 cut(s) 407, 455
AluI AGCT 2 cut(s) 407, 455
Alw21I GWGCWC 2 cut(s) 432, 522
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 119
AoxI GGCC 3 cut(s) 186, 220, 227
ApeKI GCWGC 2 cut(s) 206, 404
ApoI RAATTY 2 cut(s) 414, 509
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 2 cut(s) 206, 444
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 154
AxyI CCTNAGG 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 432, 522
BbvI GCAGC 2 cut(s) 193, 416
BceAI ACGGC 1 cut(s) 173
BciVI GTATCC 2 cut(s) 160, 310
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 305
BfuI GTATCC 2 cut(s) 160, 310
BisI GCNGC 4 cut(s) 71, 207, 357, 405
BlsI GCNGC 4 cut(s) 72, 208, 358, 406
Bme1390I CCNGG 1 cut(s) 240
BmgBI CACGTC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 414, 446
BpuMI CCSGG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse21I CCTNAGG 1 cut(s) 369
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 193, 416
BsgI GTGCAG 2 cut(s) 183, 423
Bsh1236I CGCG 3 cut(s) 204, 442, 444
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 188, 222, 229
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 432, 522
BsiSI CCGG 2 cut(s) 240, 500
BslFI GGGAC 1 cut(s) 501
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 110
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 501
BsnI GGCC 3 cut(s) 188, 222, 229
Bsp1286I GDGCHC 2 cut(s) 432, 522
Bsp143I GATC 3 cut(s) 120, 124, 258
Bsp19I CCATGG 1 cut(s) 217
BspACI CCGC 4 cut(s) 70, 329, 357, 398
BspANI GGCC 3 cut(s) 188, 222, 229
BspCNI CTCAG 1 cut(s) 382
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 3 cut(s) 204, 442, 444
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 74
BspPI GGATC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 3 cut(s) 120, 124, 258
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 322
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 202, 236
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 217
BstFNI CGCG 3 cut(s) 204, 442, 444
BstHHI GCGC 2 cut(s) 206, 444
BstKTI GATC 3 cut(s) 123, 127, 261
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 120, 124, 258
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 6 cut(s) 61, 70, 206, 235, 240, 404
BstSCI CCNGG 1 cut(s) 238
BstUI CGCG 3 cut(s) 204, 442, 444
BstV1I GCAGC 2 cut(s) 193, 416
BstV2I GAAGAC 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 123
Bsu36I CCTNAGG 1 cut(s) 369
BsuI GTATCC 2 cut(s) 160, 310
BsuRI GGCC 3 cut(s) 188, 222, 229
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 217
BtrI CACGTC 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 2 cut(s) 202, 236
CciI TCATGA 1 cut(s) 261
CfoI GCGC 2 cut(s) 206, 444
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 70
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 4 cut(s) 218, 262, 419, 524
DdeI CTNAG 1 cut(s) 369
DpnI GATC 3 cut(s) 122, 126, 260
DpnII GATC 3 cut(s) 120, 124, 258
EaeI YGGCCR 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 4 cut(s) 221, 265, 422, 527
FaqI GGGAC 1 cut(s) 501
FatI CATG 4 cut(s) 217, 261, 418, 523
FauI CCCGC 2 cut(s) 322, 391
Fnu4HI GCNGC 4 cut(s) 71, 207, 357, 405
Fsp4HI GCNGC 4 cut(s) 71, 207, 357, 405
FspBI CTAG 1 cut(s) 305
GlaI GCGC 2 cut(s) 205, 443
GluI GCNGC 4 cut(s) 71, 207, 357, 405
HaeIII GGCC 3 cut(s) 188, 222, 229
HapII CCGG 2 cut(s) 240, 500
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 206, 444
Hin1II CATG 4 cut(s) 221, 265, 422, 527
Hin6I GCGC 2 cut(s) 204, 442
HinP1I GCGC 2 cut(s) 204, 442
HindIII AAGCTT 1 cut(s) 453
HpaII CCGG 2 cut(s) 240, 500
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 277, 517
Hpy188III TCNNGA 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 2 cut(s) 177, 388
HpyCH4V TGCA 3 cut(s) 158, 200, 404
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 70, 206, 235, 240, 404
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 177, 388
Hsp92II CATG 4 cut(s) 221, 265, 422, 527
HspAI GCGC 2 cut(s) 204, 442
Kzo9I GATC 3 cut(s) 120, 124, 258
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 6 cut(s) 120, 163, 211, 253, 356, 513
Lsp1109I GCAGC 2 cut(s) 193, 416
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 177, 388
MaeIII GTNAC 2 cut(s) 142, 389
MalI GATC 3 cut(s) 122, 126, 260
MboI GATC 3 cut(s) 120, 124, 258
MboII GAAGA 2 cut(s) 185, 311
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 2 cut(s) 432, 522
MluCI AATT 4 cut(s) 15, 414, 474, 509
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 9 cut(s) 45, 99, 133, 154, 233, 240, 243, 378, 418
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 1 cut(s) 535
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 2 cut(s) 240, 500
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 474
MvnI CGCG 3 cut(s) 204, 442, 444
MwoI GCNNNNNNNGC 6 cut(s) 61, 70, 206, 235, 240, 404
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 217
NdeII GATC 3 cut(s) 120, 124, 258
NlaIII CATG 4 cut(s) 221, 265, 422, 527
NlaIV GGNNCC 1 cut(s) 74
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 142
PagI TCATGA 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 338
PkrI GCNGC 4 cut(s) 72, 208, 358, 406
Ple19I CGATCG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 74
PvuI CGATCG 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 407
SaqAI TTAA 1 cut(s) 535
SatI GCNGC 4 cut(s) 71, 207, 357, 405
Sau3AI GATC 3 cut(s) 120, 124, 258
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 2 cut(s) 432, 522
SetI ASST 8 cut(s) 144, 180, 370, 375, 391, 409, 429, 457
SfaNI GCATC 1 cut(s) 316
Sse9I AATT 4 cut(s) 15, 414, 474, 509
SsiI CCGC 4 cut(s) 70, 329, 357, 398
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 2 cut(s) 180, 391
TaqI TCGA 3 cut(s) 59, 123, 468
TasI AATT 4 cut(s) 15, 414, 474, 509
TauI GCSGC 2 cut(s) 73, 359
Tru1I TTAA 1 cut(s) 535
Tru9I TTAA 1 cut(s) 535
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 206, 404
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 281, 303, 407
TspGWI ACGGA 2 cut(s) 81, 185
TspRI CASTG 1 cut(s) 510
XapI RAATTY 2 cut(s) 414, 509
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.