Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004195.1

Orthogroup ID

OG0018897

Physical Location & Seq

Genomic Coordinates Forward (+)

605 .. 3829

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgggtggccaaagtagtggaagctctgcatgttccgaggagtcttttgtgaagatgccaacgataaagttcaccaagctcttcatcaatggagaattcctcgattccgtttcagatccaagaacaggggaggtgataaccagagtggcagaaggagataaggaagacgtggatttggcagtgaaagctgcacgcgccgcctttgaccatggcccctggcctcgcttacccggcgctgagaggggagcgattatgttgaagttcgcagacttgattgatgaacacaccgaagaactagccaagttggatacagttgatgctgggaagttgttcagttttggcaaagccgtagacatacctcaggtagcacaaactctacgttactatgctggtgcagctgataaaattcacggagaggtgctcaaaatgtcgcgcgagcttcaagcttatacattacttgaacccattggagttgtcggacacatcattccatggaattttcccagcaccctgttatttgctaagattgctccttccttggcagctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

183

Amino Acids

19.72

Weight (kDa)

5.23

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018897)

Species	Orthologous Gene IDs
malus_domestica	MD02G1049000.v1.1
pyrus_communis	pycom02g04110 pycom02g04140
rosa_chinensis	RchiOBHm_Chr3g0491961
rosa_multiflora	Rmu_co8011570.1_g000001 Rmu_sc0004195.1_g000001
rosa_samantha	Rh2AG056100 Rh2BG054700 Rh2CG057000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	3 cut(s)	195, 433, 435
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	3 cut(s)	95, 405, 496
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	259, 443, 461
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	7 cut(s)	24, 79, 188, 398, 439, 446, 545
AluI	AGCT	7 cut(s)	24, 79, 188, 398, 439, 446, 545
Alw21I	GWGCWC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	3 cut(s)	7, 211, 218
ApeKI	GCWGC	3 cut(s)	188, 395, 542
ApoI	RAATTY	3 cut(s)	95, 405, 496
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	3 cut(s)	197, 236, 435
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	64, 145
AxyI	CCTNAGG	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	175, 407
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	217
BciVI	GTATCC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	231
BfaI	CTAG	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	4 cut(s)	189, 198, 396, 543
BlsI	GCNGC	4 cut(s)	190, 199, 397, 544
Bme1390I	CCNGG	2 cut(s)	217, 231
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	217, 231
BmsI	GCATC	2 cut(s)	45, 307
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	4 cut(s)	84, 116, 405, 437
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	5 cut(s)	36, 208, 215, 491, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse21I	CCTNAGG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	5 cut(s)	36, 208, 215, 491, 537
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	2 cut(s)	228, 374
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	175, 407
BseYI	CCCAGC	2 cut(s)	320, 503
BsgI	GTGCAG	2 cut(s)	174, 414
Bsh1236I	CGCG	3 cut(s)	195, 433, 435
BshFI	GGCC	3 cut(s)	9, 213, 220
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	125
BsnI	GGCC	3 cut(s)	9, 213, 220
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	2 cut(s)	208, 491
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	3 cut(s)	9, 213, 220
BspCNI	CTCAG	2 cut(s)	229, 373
BspFNI	CGCG	3 cut(s)	195, 433, 435
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	86
BssECI	CCNNGG	5 cut(s)	36, 208, 215, 491, 537
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	3 cut(s)	208, 491, 537
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	193, 437
BstDEI	CTNAG	3 cut(s)	237, 360, 522
BstDSI	CCRYGG	2 cut(s)	208, 491
BstFNI	CGCG	3 cut(s)	195, 433, 435
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	3 cut(s)	197, 236, 435
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 194, 197, 231, 395, 527
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	215, 229
BstUI	CGCG	3 cut(s)	195, 433, 435
BstV1I	GCAGC	2 cut(s)	175, 407
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	3 cut(s)	9, 213, 220
BtgI	CCRYGG	2 cut(s)	208, 491
BtrI	CACGTC	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	193, 437
CfoI	GCGC	3 cut(s)	197, 236, 435
Cfr13I	GGNCC	1 cut(s)	212
CviAII	CATG	3 cut(s)	30, 209, 492
DdeI	CTNAG	3 cut(s)	237, 360, 522
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	3 cut(s)	208, 491, 537
Eco81I	CCTNAGG	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	3 cut(s)	208, 491, 537
ErhI	CCWWGG	3 cut(s)	208, 491, 537
FaeI	CATG	3 cut(s)	33, 212, 495
FaiI	YATR	7 cut(s)	31, 210, 254, 356, 387, 450, 493
FatI	CATG	3 cut(s)	29, 208, 491
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	189, 198, 396, 543
Fsp4HI	GCNGC	4 cut(s)	189, 198, 396, 543
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	3 cut(s)	196, 235, 434
GluI	GCNGC	4 cut(s)	189, 198, 396, 543
GsaI	CCCAGC	2 cut(s)	324, 507
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	9, 213, 220
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	3 cut(s)	197, 236, 435
Hin1II	CATG	3 cut(s)	33, 212, 495
Hin6I	GCGC	3 cut(s)	195, 234, 433
HinP1I	GCGC	3 cut(s)	195, 234, 433
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	2 cut(s)	41, 104
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	64, 145
Hpy166II	GTNNAC	2 cut(s)	72, 352
Hpy188I	TCNGA	3 cut(s)	37, 115, 479
Hpy8I	GTNNAC	2 cut(s)	72, 352
HpyAV	CCTTC	2 cut(s)	146, 543
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	2 cut(s)	168, 379
HpyCH4V	TGCA	3 cut(s)	29, 191, 395
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 194, 197, 231, 395, 527
HpyF3I	CTNAG	3 cut(s)	237, 360, 522
HpySE526I	ACGT	2 cut(s)	168, 379
Hsp92II	CATG	3 cut(s)	33, 212, 495
HspAI	GCGC	3 cut(s)	195, 234, 433
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	245, 535
Lsp1109I	GCAGC	2 cut(s)	175, 407
LweI	GCATC	2 cut(s)	45, 307
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	2 cut(s)	168, 379
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	4 cut(s)	64, 73, 176, 302
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	3 cut(s)	95, 405, 496
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	285, 457
MnlI	CCTC	7 cut(s)	31, 110, 124, 231, 234, 369, 409
Mox20I	TGGCCA	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	9
MspA1I	CMGCKG	2 cut(s)	398, 545
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	217, 231
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	3 cut(s)	195, 433, 435
MwoI	GCNNNNNNNGC	6 cut(s)	185, 194, 197, 231, 395, 527
NciI	CCSGG	1 cut(s)	231
NcoI	CCATGG	2 cut(s)	208, 491
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	33, 212, 495
NlaIV	GGNNCC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	190, 199, 397, 544
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	215
PspFI	CCCAGC	2 cut(s)	320, 503
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	115
PvuII	CAGCTG	2 cut(s)	398, 545
SapI	GCTCTTC	1 cut(s)	86
SatI	GCNGC	4 cut(s)	189, 198, 396, 543
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	217, 231
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	2 cut(s)	45, 307
Sse9I	AATT	3 cut(s)	95, 405, 496
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	215, 229
StyI	CCWWGG	3 cut(s)	208, 491, 537
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	2 cut(s)	171, 382
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	95, 405, 496
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	3 cut(s)	188, 395, 542
TspDTI	ATGAA	2 cut(s)	73, 294
TspGWI	ACGGA	2 cut(s)	97, 426
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	3 cut(s)	95, 405, 496
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.