Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018897

Physical Location & Seq

Genomic Coordinates Forward (+)

4493830 .. 4496939

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTGGCGATAGTGATGGAAGCTCTGCCGGCTCTCAGGAGTCCTTTGTGAAGTTGCCAACTACAAAGTTCACCAAGCTCTTCATCAATGGAGAACTCGTCGATTCCATTTCAGGTAAAACATTTGAGACGATCGATCCAAGAACAGGGGAGGTGACAACCAGAGTTGCAGAGGGGGATACGGAAGACGTGGATTTGGCCGTGAAAACTGCACGCGCTGCCTTTGACCATGGCCTCTGGCCTCGCTTGCCCGGCGTTGAGAGGAGAAAGATCATGATGAAGTTTTCGGACTTGATTGATGAACACACACAAGAACTAGCCGAGTTGGATACAGTTGATGCGGGGAAGTTGTTCAGTTCTGGCAAAGCCGCAGACATACCTCAGGTAGCACAAACTATACGTTACTATGCGGGTGCAGCTGATAAAATTCATGGAGAGGTGCTCAAAATGTCGCGCGAGTTTCAAGCTTATACTTTACTCGAACCAATTGGTGTTGTGGGACACATCATTCCGGCAGTGGAATTTTCCGAGCACCATGCTGGTGTTCCTGATGGAGTGATTAATGTCATAACTGGATATGGAGACACTGCTGGTGCGGCCATCACTCATCATATGGACATTGACAAAGTCAGTTTTACTGGTTCCACAGACGTAGGCCGTAAAGTGATGCAGGCTGCCGCAAAGAGCAACTTAAAAGCAGTTTCCCTTGAACTAGGGGGCAAGTCACCCCTTTTAATTTTTGATGATGCTGATGTAGATAAGGCTGCTGACCTTGCTCTCTTGAGAATCCTCTACAACAAGGTCAGGGAGAAACTTGTGTGGCAAGTTCTGGTGTTTTTGTTCAAGAAGGGATCTATGATGGAACTTGTGAAGAAATTAGAAGTAAAGGCAAAATCTTGGGCTGTTGGGGATCCTTTTGATCCTAATGTTCGTCGAGGACCCCAGGATGACACGCTCATAGCCAAGGATGAGATATTTGGACCTGTAATGTCACTGATGAAGTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

336

Amino Acids

36.58

Weight (kDa)

5.57

Isoelectric Point (pI)

19.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	36 - 171	1.5e-31	Aldehyde dehydrogenase family
Aldedh	PF00171	178 - 315	3.2e-36	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018897)

Species	Orthologous Gene IDs
malus_domestica	MD02G1049000.v1.1
pyrus_communis	pycom02g04110 pycom02g04140
rosa_chinensis	RchiOBHm_Chr3g0491961
rosa_multiflora	Rmu_co8011570.1_g000001 Rmu_sc0004195.1_g000001
rosa_samantha	Rh2AG056100 Rh2BG054700 Rh2CG057000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	216, 454, 456
AciI	CCGC	5 cut(s)	341, 369, 410, 596, 678
AclWI	GGATC	5 cut(s)	131, 859, 905, 914, 918
AcoI	YGGCCR	2 cut(s)	198, 597
AcsI	RAATTY	2 cut(s)	426, 521
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	464, 710, 844, 1006
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	942
AluBI	AGCT	4 cut(s)	24, 79, 419, 467
AluI	AGCT	4 cut(s)	24, 79, 419, 467
Alw21I	GWGCWC	2 cut(s)	444, 534
Alw26I	GTCTC	2 cut(s)	122, 576
AlwI	GGATC	5 cut(s)	131, 859, 905, 914, 918
AoxI	GGCC	5 cut(s)	198, 232, 239, 597, 655
ApeKI	GCWGC	4 cut(s)	218, 416, 674, 764
ApoI	RAATTY	2 cut(s)	426, 521
AseI	ATTAAT	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	218, 456
AspS9I	GGNCC	2 cut(s)	938, 980
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	3 cut(s)	64, 166, 717
AvaII	GGWCC	2 cut(s)	938, 980
AxyI	CCTNAGG	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	910
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	444, 534
BbvI	GCAGC	4 cut(s)	205, 428, 661, 751
BccI	CCATC	4 cut(s)	11, 545, 608, 853
BceAI	ACGGC	2 cut(s)	185, 642
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	944
BciVI	GTATCC	2 cut(s)	172, 322
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	122, 576
BfaI	CTAG	2 cut(s)	317, 713
BfuI	GTATCC	2 cut(s)	172, 322
BisI	GCNGC	7 cut(s)	219, 369, 417, 597, 675, 678, 765
BlsI	GCNGC	7 cut(s)	220, 370, 418, 598, 676, 679, 766
Bme1390I	CCNGG	2 cut(s)	252, 944
Bme18I	GGWCC	2 cut(s)	938, 980
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	938, 980
BmiI	GGNNCC	3 cut(s)	643, 912, 940
BmrFI	CCNGG	2 cut(s)	252, 944
BmsI	GCATC	3 cut(s)	328, 657, 736
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
BpuEI	CTTGAG	1 cut(s)	802
BpuMI	CCSGG	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	229, 942, 963
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	577, 643
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	944
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	229, 942, 963
BseGI	GGATG	2 cut(s)	952, 973
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	50, 395
BseNI	ACTGG	2 cut(s)	577, 643
BseRI	GAGGAG	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	205, 428, 661, 751
BsgI	GTGCAG	2 cut(s)	195, 435
Bsh1236I	CGCG	3 cut(s)	216, 454, 456
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	5 cut(s)	200, 234, 241, 599, 657
BshVI	ATCGAT	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	444, 534
BsiSI	CCGG	3 cut(s)	30, 252, 512
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	122, 576
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	5 cut(s)	200, 234, 241, 599, 657
Bsp1286I	GDGCHC	2 cut(s)	444, 534
Bsp143I	GATC	6 cut(s)	132, 136, 270, 851, 910, 919
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	5 cut(s)	341, 369, 410, 596, 678
BspANI	GGCC	5 cut(s)	200, 234, 241, 599, 657
BspCNI	CTCAG	2 cut(s)	49, 394
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	3 cut(s)	216, 454, 456
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	643, 912, 940
BspPI	GGATC	5 cut(s)	131, 859, 905, 914, 918
BspQI	GCTCTTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	577, 643
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	229, 942, 963
BssMI	GATC	6 cut(s)	132, 136, 270, 851, 910, 919
BssT1I	CCWWGG	2 cut(s)	229, 963
Bst2UI	CCWGG	1 cut(s)	944
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	31, 214, 248, 672
BstDEI	CTNAG	2 cut(s)	36, 381
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	952, 973
BstFNI	CGCG	3 cut(s)	216, 454, 456
BstHHI	GCGC	2 cut(s)	218, 456
BstKTI	GATC	6 cut(s)	135, 139, 273, 854, 913, 922
BstMAI	GTCTC	2 cut(s)	122, 576
BstMBI	GATC	6 cut(s)	132, 136, 270, 851, 910, 919
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 218, 247, 252, 416, 596, 773
BstNI	CCWGG	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	250, 942
BstUI	CGCG	3 cut(s)	216, 454, 456
BstV1I	GCAGC	4 cut(s)	205, 428, 661, 751
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	851, 910
BstYI	RGATCY	2 cut(s)	851, 910
Bsu15I	ATCGAT	1 cut(s)	135
Bsu36I	CCTNAGG	1 cut(s)	381
BsuI	GTATCC	2 cut(s)	172, 322
BsuRI	GGCC	5 cut(s)	200, 234, 241, 599, 657
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	952, 973
BtsI	GCAGTG	2 cut(s)	522, 585
BtsIMutI	CAGTG	3 cut(s)	522, 585, 992
Cac8I	GCNNGC	4 cut(s)	31, 214, 248, 672
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	2 cut(s)	218, 456
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	938, 980
ClaI	ATCGAT	1 cut(s)	135
CviAII	CATG	4 cut(s)	230, 274, 431, 536
DdeI	CTNAG	2 cut(s)	36, 381
DpnI	GATC	6 cut(s)	134, 138, 272, 853, 912, 921
DpnII	GATC	6 cut(s)	132, 136, 270, 851, 910, 919
EaeI	YGGCCR	2 cut(s)	198, 597
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	229, 963
Eco47I	GGWCC	2 cut(s)	938, 980
Eco81I	CCTNAGG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRII	CCWGG	1 cut(s)	942
EcoT14I	CCWWGG	2 cut(s)	229, 963
ErhI	CCWWGG	2 cut(s)	229, 963
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	4 cut(s)	233, 277, 434, 539
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	229, 273, 430, 535
FauI	CCCGC	2 cut(s)	334, 403
FauNDI	CATATG	1 cut(s)	612
Fnu4HI	GCNGC	7 cut(s)	219, 369, 417, 597, 675, 678, 765
FokI	GGATG	2 cut(s)	959, 980
Fsp4HI	GCNGC	7 cut(s)	219, 369, 417, 597, 675, 678, 765
FspBI	CTAG	2 cut(s)	317, 713
GlaI	GCGC	2 cut(s)	217, 455
GluI	GCNGC	7 cut(s)	219, 369, 417, 597, 675, 678, 765
HaeIII	GGCC	5 cut(s)	200, 234, 241, 599, 657
HapII	CCGG	3 cut(s)	30, 252, 512
HhaI	GCGC	2 cut(s)	218, 456
Hin1II	CATG	4 cut(s)	233, 277, 434, 539
Hin6I	GCGC	2 cut(s)	216, 454
HinP1I	GCGC	2 cut(s)	216, 454
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	3 cut(s)	41, 104, 786
HpaII	CCGG	3 cut(s)	30, 252, 512
HphI	GGTGA	3 cut(s)	64, 166, 717
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	2 cut(s)	289, 529
Hpy188III	TCNNGA	5 cut(s)	38, 274, 548, 781, 844
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	2 cut(s)	104, 936
HpyAV	CCTTC	1 cut(s)	841
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	3 cut(s)	189, 400, 651
HpyCH4V	TGCA	4 cut(s)	170, 212, 416, 670
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 218, 247, 252, 416, 596, 773
HpyF3I	CTNAG	2 cut(s)	36, 381
HpySE526I	ACGT	3 cut(s)	189, 400, 651
Hsp92II	CATG	4 cut(s)	233, 277, 434, 539
HspAI	GCGC	2 cut(s)	216, 454
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	132, 136, 270, 851, 910, 919
LguI	GCTCTTC	1 cut(s)	86
Lsp1109I	GCAGC	4 cut(s)	205, 428, 661, 751
LweI	GCATC	3 cut(s)	328, 657, 736
MaeI	CTAG	2 cut(s)	317, 713
MaeII	ACGT	3 cut(s)	189, 400, 651
MaeIII	GTNAC	4 cut(s)	154, 401, 723, 990
MalI	GATC	6 cut(s)	134, 138, 272, 853, 912, 921
MboI	GATC	6 cut(s)	132, 136, 270, 851, 910, 919
MboII	GAAGA	3 cut(s)	73, 197, 883
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	2 cut(s)	851, 910
MhlI	GDGCHC	2 cut(s)	444, 534
MluCI	AATT	5 cut(s)	426, 486, 521, 735, 875
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	9 cut(s)	145, 166, 245, 252, 255, 390, 430, 800, 929
MroNI	GCCGGC	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	3 cut(s)	561, 692, 734
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	30, 252, 512
MspR9I	CCNGG	2 cut(s)	252, 944
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	944
MvnI	CGCG	3 cut(s)	216, 454, 456
MwoI	GCNNNNNNNGC	7 cut(s)	30, 218, 247, 252, 416, 596, 773
NaeI	GCCGGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	229
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	6 cut(s)	132, 136, 270, 851, 910, 919
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	4 cut(s)	233, 277, 434, 539
NlaIV	GGNNCC	3 cut(s)	643, 912, 940
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	3 cut(s)	154, 723, 990
PagI	TCATGA	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	104, 786
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	7 cut(s)	220, 370, 418, 598, 676, 679, 766
Ple19I	CGATCG	1 cut(s)	135
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	938
PshBI	ATTAAT	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	1 cut(s)	942
PspGI	CCWGG	1 cut(s)	942
PspN4I	GGNNCC	3 cut(s)	643, 912, 940
PspPI	GGNCC	2 cut(s)	938, 980
PspPPI	RGGWCCY	1 cut(s)	938
PsuI	RGATCY	2 cut(s)	851, 910
PsyI	GACNNNGTC	1 cut(s)	626
PvuI	CGATCG	1 cut(s)	135
PvuII	CAGCTG	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	561, 692, 734
SatI	GCNGC	7 cut(s)	219, 369, 417, 597, 675, 678, 765
Sau3AI	GATC	6 cut(s)	132, 136, 270, 851, 910, 919
Sau96I	GGNCC	2 cut(s)	938, 980
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	252, 944
SduI	GDGCHC	2 cut(s)	444, 534
SfaNI	GCATC	3 cut(s)	328, 657, 736
SinI	GGWCC	2 cut(s)	938, 980
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
Sse9I	AATT	5 cut(s)	426, 486, 521, 735, 875
SsiI	CCGC	5 cut(s)	341, 369, 410, 596, 678
SspMI	CTAG	2 cut(s)	317, 713
StyD4I	CCNGG	2 cut(s)	250, 942
StyI	CCWWGG	2 cut(s)	229, 963
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	3 cut(s)	192, 403, 654
TaqI	TCGA	4 cut(s)	102, 135, 480, 934
TasI	AATT	5 cut(s)	426, 486, 521, 735, 875
TauI	GCSGC	3 cut(s)	371, 599, 680
TfiI	GAWTC	2 cut(s)	104, 786
Tru1I	TTAA	3 cut(s)	561, 692, 734
Tru9I	TTAA	3 cut(s)	561, 692, 734
TscAI	CASTG	3 cut(s)	522, 592, 999
TseFI	GTSAC	3 cut(s)	154, 723, 990
TseI	GCWGC	4 cut(s)	218, 416, 674, 764
Tsp45I	GTSAC	3 cut(s)	154, 723, 990
TspDTI	ATGAA	4 cut(s)	73, 293, 315, 419
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	3 cut(s)	522, 592, 999
Tth111I	GACNNNGTC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	938, 980
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	2 cut(s)	426, 521
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	2 cut(s)	317, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.