Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0018897

Physical Location & Seq

Genomic Coordinates Forward (+)

2732063 .. 2734083

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04140.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGAGTGATTTCAACGGCAGCTCAGCTTCCTTCGTCAAGATTCCAGCAATAAAGTTTACCCAGCTGTTTATCAATGGAGGTTTCGTCGATTCCGTTTCAGGTAAAACATTTGAGACAATCGATCCAAGAACAGGGGAGGTGATAACAAGAGTTGCAGAAGGAGATAAGGAAGATGTTGACTTGGCTGTCAAGGCGGCACGTGCTGCCTTCGACCATGGAACTTGGCCTCGCTTGCCTGGCGCTGGGAGGGGAAGGATAATGATGAAGTTTGCAGACTTAATTGACCAACATGTAGAAGAACTAGCTACCTTGGATACCATTGATGCTGGGAAGTTGTTCAGTTTTGGCAAGACCAGAGACATACCGAAGGTAGCAGAAATGGTACGTTATTATGCAGGTGCAGCTGACAAAATCCATGGAGAGGTGCTCAAAATGTCGCGCAACCTTCAAGCATATACGATGCTTGAACCCATTGGTGTTGTGGGGCTCATTGTTCCCTGGAATTTCCCGAGCACCCTGCTTTTCGCAAAGGTTAGCCCTGCCTTAGCTGCTGGTTGCACCATGGTCATCAAACCTGCTGAGCAAACACCTCTATCAGCATTATACTTTGCTTATCTGGCTAAGTTGGCTGGTGTTCCTGACGGAGTGTTCAATGTCATAACTGGATTTGGAAAGACTGCTGGTGCTGCCATCAGCCATCATATGGGCATTGACAAAGTCAGTTTTACTGGTTCGACCGAGGTAGGGCGTGAAGTAATGCAGGCTGCAGCAAAGAGCAATCTGAAACAAGTTTCGCTTGAACTAGGAGGCAAATCACCCCTTGTGATATTTGAAGATGCTGATATAAATATGGCTGCTCGATCTTGCTCTCTTGGGAGTCCTTTACAACAAGGGAGAAATTTGTGTGGCAAGTTCCCGTATTTATGTTCAAGAAGGGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

316

Amino Acids

33.73

Weight (kDa)

8.26

Isoelectric Point (pI)

25.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018897)

Species	Orthologous Gene IDs
malus_domestica	MD02G1049000.v1.1
pyrus_communis	pycom02g04110 pycom02g04140
rosa_chinensis	RchiOBHm_Chr3g0491961
rosa_multiflora	Rmu_co8011570.1_g000001 Rmu_sc0004195.1_g000001
rosa_samantha	Rh2AG056100 Rh2BG054700 Rh2CG057000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc36I	ACCTGC	2 cut(s)	389, 586
AccB7I	CCANNNNNTGG	1 cut(s)	706
AccII	CGCG	1 cut(s)	442
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	505, 901
AcvI	CACGTG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	5 cut(s)	134, 245, 424, 706, 747
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	7 cut(s)	16, 452, 470, 655, 803, 836, 933
AjnI	CCWGG	2 cut(s)	238, 500
AluBI	AGCT	6 cut(s)	24, 29, 67, 308, 407, 551
AluI	AGCT	6 cut(s)	24, 29, 67, 308, 407, 551
Alw21I	GWGCWC	2 cut(s)	432, 518
Alw26I	GTCTC	2 cut(s)	110, 354
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	8 cut(s)	21, 206, 404, 551, 689, 767, 770, 857
ApoI	RAATTY	2 cut(s)	505, 901
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	245, 444
AsuHPI	GGTGA	2 cut(s)	154, 810
AvaI	CYCGRG	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	492
BbrPI	CACGTG	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	432, 518
BbvI	GCAGC	8 cut(s)	33, 193, 416, 538, 676, 754, 782, 844
BccI	CCATC	2 cut(s)	701, 708
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciT130I	CCWGG	2 cut(s)	240, 502
BciVI	GTATCC	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	110, 354
BfaI	CTAG	2 cut(s)	305, 806
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	2 cut(s)	389, 586
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	9 cut(s)	22, 198, 207, 405, 552, 690, 768, 771, 858
BlpI	GCTNAGC	2 cut(s)	25, 582
BlsI	GCNGC	9 cut(s)	23, 199, 208, 406, 553, 691, 769, 772, 859
Bme1390I	CCNGG	2 cut(s)	240, 502
BmeT110I	CYCGRG	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	240, 502
BmsI	GCATC	3 cut(s)	316, 453, 829
BplI	GAGNNNNNCTC	2 cut(s)	414, 446
Bpu10I	CCTNAGC	1 cut(s)	547
Bpu1102I	GCTNAGC	2 cut(s)	25, 582
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	203
BsaJI	CCNNGG	6 cut(s)	217, 312, 418, 500, 564, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 245, 424, 706, 747
Bse1I	ACTGG	2 cut(s)	670, 736
BseBI	CCWGG	2 cut(s)	240, 502
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	6 cut(s)	217, 312, 418, 500, 564, 741
BseLI	CCNNNNNNNGG	5 cut(s)	134, 245, 424, 706, 747
BseMII	CTCAG	2 cut(s)	39, 573
BseNI	ACTGG	2 cut(s)	670, 736
BseXI	GCAGC	8 cut(s)	33, 193, 416, 538, 676, 754, 782, 844
BseYI	CCCAGC	3 cut(s)	63, 245, 329
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	741
BshFI	GGCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	741
BsiHKAI	GWGCWC	2 cut(s)	432, 518
BsiHKCI	CYCGRG	1 cut(s)	511
BslI	CCNNNNNNNGG	5 cut(s)	134, 245, 424, 706, 747
BsmAI	GTCTC	2 cut(s)	110, 354
BsnI	GGCC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	511
Bsp1286I	GDGCHC	3 cut(s)	432, 492, 518
Bsp143I	GATC	2 cut(s)	124, 863
Bsp1720I	GCTNAGC	2 cut(s)	25, 582
Bsp19I	CCATGG	3 cut(s)	217, 418, 564
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	2 cut(s)	38, 574
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	772
BspMI	ACCTGC	2 cut(s)	389, 586
BspPI	GGATC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	670, 736
BssECI	CCNNGG	6 cut(s)	217, 312, 418, 500, 564, 741
BssMI	GATC	2 cut(s)	124, 863
BssT1I	CCWWGG	4 cut(s)	217, 312, 418, 564
Bst2UI	CCWGG	2 cut(s)	240, 502
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	236, 765
BstDEI	CTNAG	4 cut(s)	25, 547, 582, 624
BstDSI	CCRYGG	3 cut(s)	217, 418, 564
BstFNI	CGCG	1 cut(s)	442
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	245, 444
BstKTI	GATC	2 cut(s)	127, 866
BstMAI	GTCTC	2 cut(s)	110, 354
BstMBI	GATC	2 cut(s)	124, 863
BstMCI	CGRYCG	1 cut(s)	741
BstNI	CCWGG	2 cut(s)	240, 502
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	238, 500
BstSFI	CTRYAG	1 cut(s)	768
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	8 cut(s)	33, 193, 416, 538, 676, 754, 782, 844
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	229
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	3 cut(s)	217, 418, 564
BveI	ACCTGC	2 cut(s)	389, 586
Cac8I	GCNNGC	2 cut(s)	236, 765
CfoI	GCGC	2 cut(s)	245, 444
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	4 cut(s)	218, 293, 419, 565
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	4 cut(s)	25, 547, 582, 624
DpnI	GATC	2 cut(s)	126, 865
DpnII	GATC	2 cut(s)	124, 863
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eco130I	CCWWGG	4 cut(s)	217, 312, 418, 564
Eco24I	GRGCYC	1 cut(s)	492
Eco72I	CACGTG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	238, 500
EcoT14I	CCWWGG	4 cut(s)	217, 312, 418, 564
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	4 cut(s)	217, 312, 418, 564
FaeI	CATG	4 cut(s)	221, 296, 422, 568
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FatI	CATG	4 cut(s)	217, 292, 418, 564
FauNDI	CATATG	1 cut(s)	705
Fnu4HI	GCNGC	9 cut(s)	22, 198, 207, 405, 552, 690, 768, 771, 858
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	9 cut(s)	22, 198, 207, 405, 552, 690, 768, 771, 858
FspBI	CTAG	2 cut(s)	305, 806
GlaI	GCGC	2 cut(s)	244, 443
GluI	GCNGC	9 cut(s)	22, 198, 207, 405, 552, 690, 768, 771, 858
GsaI	CCCAGC	3 cut(s)	67, 249, 333
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	245, 444
Hin1II	CATG	4 cut(s)	221, 296, 422, 568
Hin6I	GCGC	2 cut(s)	243, 442
HinP1I	GCGC	2 cut(s)	243, 442
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	43, 92, 880
HphI	GGTGA	2 cut(s)	154, 810
Hpy166II	GTNNAC	2 cut(s)	60, 181
Hpy188I	TCNGA	1 cut(s)	786
Hpy188III	TCNNGA	4 cut(s)	40, 511, 641, 933
Hpy8I	GTNNAC	2 cut(s)	60, 181
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	7 cut(s)	43, 155, 220, 249, 364, 458, 930
HpyCH4IV	ACGT	2 cut(s)	202, 388
HpyCH4V	TGCA	7 cut(s)	158, 275, 398, 404, 561, 763, 770
HpyF3I	CTNAG	4 cut(s)	25, 547, 582, 624
HpySE526I	ACGT	2 cut(s)	202, 388
Hsp92II	CATG	4 cut(s)	221, 296, 422, 568
HspAI	GCGC	2 cut(s)	243, 442
Kzo9I	GATC	2 cut(s)	124, 863
Lsp1109I	GCAGC	8 cut(s)	33, 193, 416, 538, 676, 754, 782, 844
LweI	GCATC	3 cut(s)	316, 453, 829
MaeI	CTAG	2 cut(s)	305, 806
MaeII	ACGT	2 cut(s)	202, 388
MalI	GATC	2 cut(s)	126, 865
MboI	GATC	2 cut(s)	124, 863
MboII	GAAGA	3 cut(s)	185, 311, 848
MhlI	GDGCHC	3 cut(s)	432, 492, 518
MluCI	AATT	3 cut(s)	282, 505, 901
MlyI	GAGTC	1 cut(s)	889
MnlI	CCTC	8 cut(s)	74, 133, 240, 243, 418, 603, 736, 803
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	67, 407
MspR9I	CCNGG	2 cut(s)	240, 502
MvaI	CCWGG	2 cut(s)	240, 502
MvnI	CGCG	1 cut(s)	442
NcoI	CCATGG	3 cut(s)	217, 418, 564
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	2 cut(s)	124, 863
NlaIII	CATG	4 cut(s)	221, 296, 422, 568
NspI	RCATGY	1 cut(s)	296
PaqCI	CACCTGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	43, 92
PflFI	GACNNNGTC	1 cut(s)	719
PflMI	CCANNNNNTGG	1 cut(s)	706
PkrI	GCNGC	9 cut(s)	23, 199, 208, 406, 553, 691, 769, 772, 859
PleI	GAGTC	1 cut(s)	888
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	888
Ppu21I	YACGTR	1 cut(s)	203
PscI	ACATGT	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	238, 500
PspCI	CACGTG	1 cut(s)	203
PspFI	CCCAGC	3 cut(s)	63, 245, 329
PspGI	CCWGG	2 cut(s)	238, 500
PstI	CTGCAG	1 cut(s)	772
PsyI	GACNNNGTC	1 cut(s)	719
PvuII	CAGCTG	2 cut(s)	67, 407
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	9 cut(s)	22, 198, 207, 405, 552, 690, 768, 771, 858
Sau3AI	GATC	2 cut(s)	124, 863
SchI	GAGTC	1 cut(s)	889
ScrFI	CCNGG	2 cut(s)	240, 502
SduI	GDGCHC	3 cut(s)	432, 492, 518
SfaNI	GCATC	3 cut(s)	316, 453, 829
SfcI	CTRYAG	1 cut(s)	768
Sse9I	AATT	3 cut(s)	282, 505, 901
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	305, 806
StyD4I	CCNGG	2 cut(s)	238, 500
StyI	CCWWGG	4 cut(s)	217, 312, 418, 564
TaiI	ACGT	2 cut(s)	205, 391
TaqI	TCGA	5 cut(s)	90, 123, 213, 737, 862
TaqII	GACCGA	1 cut(s)	755
TasI	AATT	3 cut(s)	282, 505, 901
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	43, 92
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	8 cut(s)	21, 206, 404, 551, 689, 767, 770, 857
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	2 cut(s)	85, 660
Tth111I	GACNNNGTC	1 cut(s)	719
Van91I	CCANNNNNTGG	1 cut(s)	706
XapI	RAATTY	2 cut(s)	505, 901
XceI	RCATGY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	2 cut(s)	305, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.