Rh2CG057000

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018897
Physical Location & Seq
Forward (+)
4525408 .. 4537742
12335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG057000.1

Sequence Viewer

Length: 549 bp
ATGGGTGGCGATAGTGATGGAAGCTCTGCCGGCTCTCAGGAGTCCTTTGTGAAGTTGCCAACGACAAAGTTCACCAAGCTCTTCATCAATGGAGAATTCGACGATTCCATTTCAGGTAAAACATTTGAGACGATCGATCCAAGAACAGGGGAGGTGACAACCAGAGTTGCAGAGGGGGATACGGAAGACGTGGATTTGGCCGTGAAAACTGCACGCGCTGCCTTTGACCATGGCCTCTGGCCTCGCTTGCCCGGCGTTGAGAGGAGAAAGATCATGATGAAGTTTTCGGACTTGATTGATGAACACACAGAAGAACTAGCCGAGTTGGATACAGTTGATGCGGGGAAGTTGTTCAGTTTTGGCAAAGCCGCAGACATACCTCAGGTAGCACAAACTATACGTTACTATGCGGGTGCAGCTGATAAAATTCATGGAGAGGTGCTCAAAATGTCGCGCGAGTTTCAAGCTTATACTTTACTCGAACCAATTGGTGTTGTGGGACACATCATTCCGGCAGTGGAATTTTCCGAGCACCATGTTATCTGTTAA

Protein Analysis

182

Amino Acids

19.95

Weight (kDa)

4.87

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 38 - 171 2.1e-32 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018897)

Species Orthologous Gene IDs
malus_domestica MD02G1049000.v1.1
pyrus_communis pycom02g04110 pycom02g04140
rosa_chinensis RchiOBHm_Chr3g0491961
rosa_multiflora Rmu_co8011570.1_g000001 Rmu_sc0004195.1_g000001
rosa_samantha Rh2AG056100 Rh2BG054700 Rh2CG057000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 216, 454, 456
AciI CCGC 3 cut(s) 341, 369, 410
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 3 cut(s) 95, 426, 521
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 464
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 4 cut(s) 24, 79, 419, 467
AluI AGCT 4 cut(s) 24, 79, 419, 467
Alw21I GWGCWC 2 cut(s) 444, 534
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 131
AoxI GGCC 3 cut(s) 198, 232, 239
ApeKI GCWGC 2 cut(s) 218, 416
ApoI RAATTY 3 cut(s) 95, 426, 521
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 2 cut(s) 218, 456
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 64, 166
AxyI CCTNAGG 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 444, 534
BbvI GCAGC 2 cut(s) 205, 428
BccI CCATC 1 cut(s) 11
BceAI ACGGC 1 cut(s) 185
BciVI GTATCC 2 cut(s) 172, 322
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 317
BfuI GTATCC 2 cut(s) 172, 322
BisI GCNGC 3 cut(s) 219, 369, 417
BlsI GCNGC 3 cut(s) 220, 370, 418
Bme1390I CCNGG 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 426, 458
BpuMI CCSGG 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 50, 395
BseRI GAGGAG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 205, 428
BsgI GTGCAG 2 cut(s) 195, 435
Bsh1236I CGCG 3 cut(s) 216, 454, 456
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 200, 234, 241
BshVI ATCGAT 1 cut(s) 135
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 444, 534
BsiSI CCGG 3 cut(s) 30, 252, 512
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 3 cut(s) 200, 234, 241
Bsp1286I GDGCHC 2 cut(s) 444, 534
Bsp143I GATC 3 cut(s) 132, 136, 270
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 3 cut(s) 341, 369, 410
BspANI GGCC 3 cut(s) 200, 234, 241
BspCNI CTCAG 2 cut(s) 49, 394
BspDI ATCGAT 1 cut(s) 135
BspFNI CGCG 3 cut(s) 216, 454, 456
BspHI TCATGA 1 cut(s) 273
BspPI GGATC 1 cut(s) 131
BspQI GCTCTTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 132, 136, 270
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 31, 214, 248
BstDEI CTNAG 2 cut(s) 36, 381
BstDSI CCRYGG 1 cut(s) 229
BstFNI CGCG 3 cut(s) 216, 454, 456
BstHHI GCGC 2 cut(s) 218, 456
BstKTI GATC 3 cut(s) 135, 139, 273
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 3 cut(s) 132, 136, 270
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 5 cut(s) 30, 218, 247, 252, 416
BstSCI CCNGG 1 cut(s) 250
BstUI CGCG 3 cut(s) 216, 454, 456
BstV1I GCAGC 2 cut(s) 205, 428
BstV2I GAAGAC 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 135
Bsu36I CCTNAGG 1 cut(s) 381
BsuI GTATCC 2 cut(s) 172, 322
BsuRI GGCC 3 cut(s) 200, 234, 241
BsuTUI ATCGAT 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 3 cut(s) 31, 214, 248
CciI TCATGA 1 cut(s) 273
CfoI GCGC 2 cut(s) 218, 456
Cfr10I RCCGGY 1 cut(s) 29
ClaI ATCGAT 1 cut(s) 135
CviAII CATG 4 cut(s) 230, 274, 431, 536
DdeI CTNAG 2 cut(s) 36, 381
DpnI GATC 3 cut(s) 134, 138, 272
DpnII GATC 3 cut(s) 132, 136, 270
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 229
Eco81I CCTNAGG 1 cut(s) 381
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 4 cut(s) 233, 277, 434, 539
FaiI YATR 8 cut(s) 231, 275, 377, 398, 408, 432, 471, 537
FaqI GGGAC 1 cut(s) 513
FatI CATG 4 cut(s) 229, 273, 430, 535
FauI CCCGC 2 cut(s) 334, 403
Fnu4HI GCNGC 3 cut(s) 219, 369, 417
Fsp4HI GCNGC 3 cut(s) 219, 369, 417
FspBI CTAG 1 cut(s) 317
GlaI GCGC 2 cut(s) 217, 455
GluI GCNGC 3 cut(s) 219, 369, 417
HaeIII GGCC 3 cut(s) 200, 234, 241
HapII CCGG 3 cut(s) 30, 252, 512
HhaI GCGC 2 cut(s) 218, 456
Hin1II CATG 4 cut(s) 233, 277, 434, 539
Hin6I GCGC 2 cut(s) 216, 454
HinP1I GCGC 2 cut(s) 216, 454
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 2 cut(s) 41, 104
HpaII CCGG 3 cut(s) 30, 252, 512
HphI GGTGA 2 cut(s) 64, 166
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 289, 529
Hpy188III TCNNGA 2 cut(s) 38, 274
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 2 cut(s) 189, 400
HpyCH4V TGCA 3 cut(s) 170, 212, 416
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 218, 247, 252, 416
HpyF3I CTNAG 2 cut(s) 36, 381
HpySE526I ACGT 2 cut(s) 189, 400
Hsp92II CATG 4 cut(s) 233, 277, 434, 539
HspAI GCGC 2 cut(s) 216, 454
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 132, 136, 270
LguI GCTCTTC 1 cut(s) 86
LpnPI CCDG 9 cut(s) 23, 43, 99, 132, 175, 223, 265, 368, 525
Lsp1109I GCAGC 2 cut(s) 205, 428
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 317
MaeII ACGT 2 cut(s) 189, 400
MaeIII GTNAC 2 cut(s) 154, 401
MalI GATC 3 cut(s) 134, 138, 272
MboI GATC 3 cut(s) 132, 136, 270
MboII GAAGA 3 cut(s) 73, 197, 323
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 444, 534
MluCI AATT 4 cut(s) 95, 426, 486, 521
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 7 cut(s) 145, 166, 245, 252, 255, 390, 430
MroNI GCCGGC 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 1 cut(s) 547
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 3 cut(s) 30, 252, 512
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 486
MvnI CGCG 3 cut(s) 216, 454, 456
MwoI GCNNNNNNNGC 5 cut(s) 30, 218, 247, 252, 416
NaeI GCCGGC 1 cut(s) 31
NciI CCSGG 1 cut(s) 252
NcoI CCATGG 1 cut(s) 229
NdeII GATC 3 cut(s) 132, 136, 270
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 4 cut(s) 233, 277, 434, 539
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 154
PagI TCATGA 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 86
PdiI GCCGGC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 220, 370, 418
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PvuI CGATCG 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 547
SatI GCNGC 3 cut(s) 219, 369, 417
Sau3AI GATC 3 cut(s) 132, 136, 270
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 444, 534
SfaNI GCATC 1 cut(s) 328
Sse9I AATT 4 cut(s) 95, 426, 486, 521
SsiI CCGC 3 cut(s) 341, 369, 410
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 2 cut(s) 192, 403
TaqI TCGA 3 cut(s) 99, 135, 480
TasI AATT 4 cut(s) 95, 426, 486, 521
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 547
Tru9I TTAA 1 cut(s) 547
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 218, 416
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 4 cut(s) 73, 293, 315, 419
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 522
XapI RAATTY 3 cut(s) 95, 426, 521
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.