Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005068

Physical Location & Seq

Genomic Coordinates Forward (+)

3012837 .. 3013929

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04620.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCGGGTAAGGATTGTGTTAAAGAGCATTGGTTACAAATCAGTACCAGTTGATGGCTTACCCTTCGACCATCGGAAAGGTGTGGTTCCAAACATTAGAGGGCGAGTTCTAAGTGATACATCTGGAAATCCAACGCTGCTTGAGAAGGGTTTGTATGTATGTGGATGGTTGAAGAGAGGACCAACTGGGATCATTGCTACAAACCTCTACTGTGCAGAAGAAACTGTTTCGAGTATATCTGAAGACCTTAAGCAAGGAAAATTGACATCCTCGTCTAGCTCAGGCACCAACGGTCTCCTCCAACTGCTCGATGACCGAAATGTCAGAGTTATACCATTTGGTGAATGGGAAAAGATAGACTCAGAAGAAAGAAGGCTCGGGAATTTGAGAAACAAGCCGAGGGAAAAATTAGCGACCTTGGAGGAGCTTCGGAAAGTAGCAACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016491 GO:0016730 GO:0016731 GO:0022900 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

150

Amino Acids

16.55

Weight (kDa)

9.36

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360
fragaria_vesca	FvH4_1g05550
malus_domestica	MD02G1057100.v1.1 MD15G1191600.v1.1
prunus_persica	Prupe.7G225700_v2.0.a1 Prupe.7G225700_v2.0.a1
pyrus_communis	pycom02g04610 pycom02g04620 pycom15g17150 pycom15g17160
rosa_chinensis	RchiOBHm_Chr2g0091251
rosa_laevigata	RLG00000016196
rosa_multiflora	Rmu_sc0002270.1_g000019
rosa_roxburghii	Rroxscaffold_2G00150340
rosa_rugosa	Rorug02G0014900 Rorug02G0015000
rosa_samantha	Rh2AG060600 Rh2BG059400 Rh2CG061200 Rh2CG061300 Rh2DG059900
rosa_wichuraiana	Rw2G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	271, 320
AccB1I	GGYRCC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	53
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	53
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	279, 427
AluI	AGCT	2 cut(s)	279, 427
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	3 cut(s)	47, 78, 159
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	87, 286
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	398, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	47, 190
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	398, 417
BseGI	GGATG	2 cut(s)	170, 266
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	294, 375
BseNI	ACTGG	2 cut(s)	47, 190
BseRI	GAGGAG	2 cut(s)	287, 437
BseXI	GCAGC	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	2 cut(s)	293, 374
BspLI	GGNNCC	2 cut(s)	87, 286
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	47, 190
BssECI	CCNNGG	2 cut(s)	398, 417
BssMI	GATC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	212, 226, 293
Bst6I	CTCTTC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	110, 280, 361
BstF5I	GGATG	2 cut(s)	170, 266
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	170, 266
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	44
CviJI	RGCY	5 cut(s)	57, 279, 376, 397, 427
CviKI_1	RGCY	5 cut(s)	57, 279, 376, 397, 427
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	3 cut(s)	110, 280, 361
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DrdI	GACNNNNNNGTC	2 cut(s)	271, 320
DseDI	GACNNNNNNGTC	2 cut(s)	271, 320
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaiI	YATR	4 cut(s)	156, 160, 236, 332
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	2 cut(s)	177, 253
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	359
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	5 cut(s)	75, 241, 326, 364, 432
Hpy188III	TCNNGA	2 cut(s)	123, 379
HpyAV	CCTTC	3 cut(s)	73, 139, 366
HpyCH4III	ACNGT	3 cut(s)	212, 226, 293
HpyCH4V	TGCA	1 cut(s)	215
HpyF3I	CTNAG	3 cut(s)	110, 280, 361
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	4 cut(s)	60, 108, 171, 267
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	4 cut(s)	184, 230, 254, 377
MluCI	AATT	3 cut(s)	260, 382, 407
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	155, 325
MnlI	CCTC	7 cut(s)	92, 170, 215, 280, 308, 393, 415
MseI	TTAA	2 cut(s)	20, 249
MspCI	CTTAAG	1 cut(s)	248
NdeII	GATC	1 cut(s)	189
NlaIV	GGNNCC	2 cut(s)	87, 286
NmeAIII	GCCGAG	1 cut(s)	423
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	87, 286
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	20, 249
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	353
SetI	ASST	6 cut(s)	82, 207, 249, 281, 419, 429
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	140, 248
SmoI	CTYRAG	2 cut(s)	140, 248
Sse9I	AATT	3 cut(s)	260, 382, 407
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	212, 226, 293
TaqI	TCGA	3 cut(s)	66, 230, 309
TaqII	GACCGA	1 cut(s)	330
TasI	AATT	3 cut(s)	260, 382, 407
Tru1I	TTAA	2 cut(s)	20, 249
Tru9I	TTAA	2 cut(s)	20, 249
TseI	GCWGC	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.