Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005068

Physical Location & Seq

Genomic Coordinates Forward (+)

12054820 .. 12056357

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGACTAGACCTTCACACCCCAGCTCAGATCCACGTGAACTGCACTTTGTTTTCTTTCGGAAACCAAATAAATTTCTAGAGTCTTATGAGAGAAGTGGCCATGCTTCTGGTGTCAGACTTGAGAAGACAAAACTCATAGGTATTAGCCCAGGAGAACAAACGGCTGCAGGCACTGGACAGTTTGAAGAGCTTGGATGCGGGATTGTGCTAAAGAGCATTGGTTACAAATCAGTGCCAGTTGATGGCTTACCCTTCGATCATCGGAAAGGTGTGGTTCCAAATGTTAGAGGGTGTGTTCTAAGTGATACATCTGGAGATCCAACCCTGCTTGAGAAGGGTTTATATGTATGTGGATGGTTGAAGAGAGGACCAACCGGGATCATTGCTACAAACCTGTACTGTGCAGAAGAAACTGTTGCAAGCATATCTGACGACATTAAGCTAGGAAGATTGACATCCTCATCTAACTCAGGCAGGGAGGGTCTCCTCCAACTGCTGGACAATCGGAATGTCAGAGTTATACCATTTCGTGATTGGGAAAAGATAGACTCGGAAGAAAGACGGCTTGGGAACTTAAGAAACAAGCCGAGGGAAAAACTAGCCACGTTGGAGGAGCTTCAGAAAGTAGCAACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016491 GO:0016730 GO:0016731 GO:0022900 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

213

Amino Acids

23.45

Weight (kDa)

8.66

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360
fragaria_vesca	FvH4_1g05550
malus_domestica	MD02G1057100.v1.1 MD15G1191600.v1.1
prunus_persica	Prupe.7G225700_v2.0.a1 Prupe.7G225700_v2.0.a1
pyrus_communis	pycom02g04610 pycom02g04620 pycom15g17150 pycom15g17160
rosa_chinensis	RchiOBHm_Chr2g0091251
rosa_laevigata	RLG00000016196
rosa_multiflora	Rmu_sc0002270.1_g000019
rosa_roxburghii	Rroxscaffold_2G00150340
rosa_rugosa	Rorug02G0014900 Rorug02G0015000
rosa_samantha	Rh2AG060600 Rh2BG059400 Rh2CG061200 Rh2CG061300 Rh2DG059900
rosa_wichuraiana	Rw2G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	242, 496
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	3 cut(s)	23, 311, 386
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	602
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	242, 496
AflII	CTTAAG	1 cut(s)	574
AgsI	TTSAA	2 cut(s)	185, 361
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	4 cut(s)	24, 190, 442, 616
AluI	AGCT	4 cut(s)	24, 190, 442, 616
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	3 cut(s)	23, 311, 386
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	99
BbrPI	CACGTG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	236, 348
BceAI	ACGGC	2 cut(s)	177, 578
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	4 cut(s)	6, 77, 443, 599
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	574
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	150, 376
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	2 cut(s)	150, 376
BmsI	GCATC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	140, 350
BpuMI	CCSGG	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	148, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 496
Bse1I	ACTGG	2 cut(s)	178, 236
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	148, 587
BseGI	GGATG	3 cut(s)	200, 359, 455
BseJI	GATNNNNATC	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	242, 496
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	39, 483
BseNI	ACTGG	2 cut(s)	178, 236
BseRI	GAGGAG	2 cut(s)	476, 626
BseXI	GCAGC	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	20
BsgI	GTGCAG	2 cut(s)	26, 423
BshFI	GGCC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	242, 496
BsmAI	GTCTC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	99
Bso31I	GGTCTC	1 cut(s)	488
Bsp143I	GATC	4 cut(s)	28, 256, 316, 378
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	38, 482
BspLI	GGNNCC	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	3 cut(s)	23, 311, 386
BspQI	GCTCTTC	1 cut(s)	180
BspTI	CTTAAG	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	178, 236
BssECI	CCNNGG	2 cut(s)	148, 587
BssMI	GATC	4 cut(s)	28, 256, 316, 378
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	180, 401, 415
Bst6I	CTCTTC	2 cut(s)	180, 356
BstAFI	CTTAAG	1 cut(s)	574
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	169, 421
BstDEI	CTNAG	3 cut(s)	25, 299, 469
BstF5I	GGATG	3 cut(s)	200, 359, 455
BstKTI	GATC	4 cut(s)	31, 259, 319, 381
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	4 cut(s)	28, 256, 316, 378
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	148, 374
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	28, 316
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	2 cut(s)	28, 316
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	200, 359, 455
BtsIMutI	CAGTG	2 cut(s)	171, 237
Cac8I	GCNNGC	2 cut(s)	169, 421
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	3 cut(s)	25, 299, 469
DpnI	GATC	4 cut(s)	30, 258, 318, 380
DpnII	GATC	4 cut(s)	28, 256, 316, 378
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	180, 356
EarI	CTCTTC	2 cut(s)	180, 356
Eco31I	GGTCTC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	602
Eco72I	CACGTG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	104
FaiI	YATR	8 cut(s)	87, 102, 137, 343, 345, 349, 425, 521
FatI	CATG	1 cut(s)	100
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	3 cut(s)	207, 366, 442
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	4 cut(s)	6, 77, 443, 599
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	2 cut(s)	80, 548
HpaII	CCGG	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	9 cut(s)	28, 60, 116, 264, 430, 507, 515, 553, 621
Hpy188III	TCNNGA	3 cut(s)	77, 312, 530
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	21, 262, 328
HpyCH4III	ACNGT	3 cut(s)	180, 401, 415
HpyCH4IV	ACGT	2 cut(s)	34, 605
HpyCH4V	TGCA	4 cut(s)	43, 167, 404, 419
HpyF3I	CTNAG	3 cut(s)	25, 299, 469
HpySE526I	ACGT	2 cut(s)	34, 605
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	28, 256, 316, 378
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	4 cut(s)	6, 77, 443, 599
MaeII	ACGT	2 cut(s)	34, 605
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	4 cut(s)	30, 258, 318, 380
MboI	GATC	4 cut(s)	28, 256, 316, 378
MboII	GAAGA	6 cut(s)	136, 197, 373, 419, 459, 566
MflI	RGATCY	2 cut(s)	28, 316
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	89, 542
MmeI	TCCRAC	3 cut(s)	344, 514, 588
MnlI	CCTC	7 cut(s)	281, 359, 469, 472, 497, 582, 604
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	438, 575, 637
Msp20I	TGGCCA	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	150, 376
MvaI	CCWGG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	4 cut(s)	28, 256, 316, 378
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	180
PflMI	CCANNNNNTGG	2 cut(s)	242, 496
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	2 cut(s)	88, 542
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
PpsI	GAGTC	2 cut(s)	88, 542
Ppu21I	YACGTR	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	148
PspCI	CACGTG	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	2 cut(s)	28, 316
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	438, 575, 637
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	4 cut(s)	28, 256, 316, 378
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	2 cut(s)	89, 542
ScrFI	CCNGG	2 cut(s)	150, 376
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	3 cut(s)	119, 329, 574
SmoI	CTYRAG	3 cut(s)	119, 329, 574
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	4 cut(s)	6, 77, 443, 599
StyD4I	CCNGG	2 cut(s)	148, 374
TaaI	ACNGT	3 cut(s)	180, 401, 415
TaiI	ACGT	2 cut(s)	37, 608
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	396
Tru1I	TTAA	3 cut(s)	438, 575, 637
Tru9I	TTAA	3 cut(s)	438, 575, 637
TscAI	CASTG	2 cut(s)	178, 237
TseI	GCWGC	1 cut(s)	164
TspRI	CASTG	2 cut(s)	178, 237
Van91I	CCANNNNNTGG	2 cut(s)	242, 496
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	71
XbaI	TCTAGA	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	531
XspI	CTAG	4 cut(s)	6, 77, 443, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.