Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005068

Physical Location & Seq

Genomic Coordinates Forward (+)

4398881 .. 4402920

Gene Structure 4040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG059900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGTTCAGGAAGATTTGGGATTTTCCTCTTTTAGGGATTTGAGTGGCATATATTCAGCTAGAGAATTTGTGTGGTGGTATAATGGGCATCCGGATTCCAGATACCTTAATCCTGACTTGAAGAGTTCGGATACAGCTGTAATTCTTGGCCAGGGAAATGTAGCTCTTGATGTTGCACGCATTCTCTTACGACCAACAACAGAATTGGCCACGACTGATATTGCCAACCATGCTTTGTCAGCTCTTGAGAAGAGCTCTATAAGGAAAGTATATTTGGTTGGAAGGCGGGGTCCGGCACAAGCAGCTTGTACTGCTAAAGAGCTGCGTGAAATTCTTGGTATAAAAGATCTGCATGTTCACATAAAGGAAGCTGATCTACTGAAAACCCAAGCAGATGAAGAAGAGATGAAGAATAATCGAATTCGGAAAAGGGTTTATGAGTTGCTTTCTAAGGCTGCTACATCTAGACCTTCGCACCCCAGTTCAGATCAACGTGAACTCCACTTTGTTTTCTTTCGGAAGCCAGATAAGTTTTTAGAATCTGATGAGAGAACTGGCCATGTTTCTGGTGTCAGACTTGAGAAGACAAAGCTCATAGGCGTGAACCCTGGAGAACAAATGGCTGCGGGTACGGGACAATTTGAAGATCTTGGATGCGGAATCGTTTTAAAGAGCATTGGTTACAAATCAGTACCAGTTAATGGCTTACCCTTTGATGATCGGAAAGGTGTGGTTCCAAATGTTAGAGGGCGAGTTGTAAGTGATACATCTGGAGATCATACACGGCTAGAGAAGGGATTGTATGTATGTGGATGGTTAAAGCGAGGACCGACTGGGATCATTGCTACAAACCTCTATTGTGCAGAAGAAACTGTTGCAAGTATATCTGAAGACCTTAAGCAAGGCATAGTCACATTCTCATCAGCTAGCTCAGGCAGGGAGGGTCTCCTCCAATTGCTGGACAACCGAAATGTAAGAGTTGTACCATTTAGTAGATGGGAAGAGACGGACTCACGAGAAAGAGAGCTTGGGAATTTTAAAAACAAGCCCCGGGAAAAATTAGCCACATTGGAGGAGCTTGAGAAAGCATCAGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016491 GO:0016730 GO:0016731 GO:0022900 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

366

Amino Acids

40.8

Weight (kDa)

7.11

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360
fragaria_vesca	FvH4_1g05550
malus_domestica	MD02G1057100.v1.1 MD15G1191600.v1.1
prunus_persica	Prupe.7G225700_v2.0.a1 Prupe.7G225700_v2.0.a1
pyrus_communis	pycom02g04610 pycom02g04620 pycom15g17150 pycom15g17160
rosa_chinensis	RchiOBHm_Chr2g0091251
rosa_laevigata	RLG00000016196
rosa_multiflora	Rmu_sc0002270.1_g000019
rosa_roxburghii	Rroxscaffold_2G00150340
rosa_rugosa	Rorug02G0014900 Rorug02G0015000
rosa_samantha	Rh2AG060600 Rh2BG059400 Rh2CG061200 Rh2CG061300 Rh2DG059900
rosa_wichuraiana	Rw2G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	701, 958
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	3 cut(s)	286, 626, 657
AclWI	GGATC	1 cut(s)	845
AcoI	YGGCCR	3 cut(s)	148, 207, 556
AcsI	RAATTY	4 cut(s)	65, 330, 420, 1033
AcuI	CTGAAG	1 cut(s)	909
AfaI	GTAC	4 cut(s)	310, 631, 693, 984
AfiI	CCNNNNNNNGG	3 cut(s)	33, 701, 958
AflII	CTTAAG	1 cut(s)	896
AgsI	TTSAA	2 cut(s)	121, 644
AjnI	CCWGG	2 cut(s)	150, 607
AjuI	GAANNNNNNNTTGG	4 cut(s)	257, 289, 1011, 1043
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	950, 998
AlwI	GGATC	1 cut(s)	845
Ama87I	CYCGRG	1 cut(s)	1050
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	3 cut(s)	148, 207, 556
ApeKI	GCWGC	4 cut(s)	302, 322, 455, 623
ApoI	RAATTY	4 cut(s)	65, 330, 420, 1033
AspS9I	GGNCC	2 cut(s)	290, 827
AsuC2I	CCSGG	2 cut(s)	1051, 1052
AsuNHI	GCTAGC	1 cut(s)	926
AvaI	CYCGRG	1 cut(s)	1050
AvaII	GGWCC	2 cut(s)	290, 827
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BalI	TGGCCA	3 cut(s)	150, 209, 558
BanII	GRGCYC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	360, 392
BauI	CACGAG	1 cut(s)	1014
BbsI	GAAGAC	2 cut(s)	590, 897
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	309, 314, 442, 610
BccI	CCATC	2 cut(s)	807, 990
BceAI	ACGGC	1 cut(s)	800
BciT130I	CCWGG	2 cut(s)	152, 609
BciVI	GTATCC	1 cut(s)	124
BcnI	CCSGG	2 cut(s)	1051, 1052
BcoDI	GTCTC	2 cut(s)	950, 998
BfaI	CTAG	4 cut(s)	60, 465, 788, 927
BfrI	CTTAAG	1 cut(s)	896
BfuI	GTATCC	1 cut(s)	124
BglII	AGATCT	2 cut(s)	346, 646
BisI	GCNGC	4 cut(s)	303, 323, 456, 624
BlsI	GCNGC	4 cut(s)	304, 324, 457, 625
Bme1390I	CCNGG	4 cut(s)	152, 609, 1051, 1052
Bme18I	GGWCC	2 cut(s)	290, 827
BmeT110I	CYCGRG	1 cut(s)	1050
BmgT120I	GGNCC	2 cut(s)	290, 827
BmiI	GGNNCC	2 cut(s)	291, 735
BmrFI	CCNGG	4 cut(s)	152, 609, 1051, 1052
BmrI	ACTGGG	2 cut(s)	474, 843
BmsI	GCATC	3 cut(s)	97, 644, 1097
BmtI	GCTAGC	1 cut(s)	930
BmuI	ACTGGG	2 cut(s)	474, 843
BpiI	GAAGAC	2 cut(s)	590, 897
BplI	GAGNNNNNCTC	4 cut(s)	239, 271, 995, 1027
BpmI	CTGGAG	2 cut(s)	630, 792
Bpu10I	CCTNAGC	1 cut(s)	931
BpuEI	CTTGAG	3 cut(s)	266, 599, 1100
BpuMI	CCSGG	2 cut(s)	1051, 1052
BsaI	GGTCTC	1 cut(s)	950
BsaJI	CCNNGG	4 cut(s)	151, 607, 1049, 1050
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 701, 958
Bse1I	ACTGG	4 cut(s)	480, 559, 695, 838
Bse3DI	GCAATG	1 cut(s)	840
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	152, 609
BseDI	CCNNGG	4 cut(s)	151, 607, 1049, 1050
BseGI	GGATG	3 cut(s)	88, 659, 818
BseLI	CCNNNNNNNGG	3 cut(s)	33, 701, 958
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	1 cut(s)	945
BseNI	ACTGG	4 cut(s)	480, 559, 695, 838
BseRI	GAGGAG	2 cut(s)	938, 1088
BseXI	GCAGC	4 cut(s)	309, 314, 442, 610
BsgI	GTGCAG	1 cut(s)	882
BshFI	GGCC	3 cut(s)	150, 209, 558
BsiHKAI	GWGCWC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	1050
BsiSI	CCGG	3 cut(s)	92, 293, 1051
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	3 cut(s)	33, 701, 958
BsmAI	GTCTC	2 cut(s)	950, 998
BsmBI	CGTCTC	1 cut(s)	998
BsmFI	GGGAC	1 cut(s)	648
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	150, 209, 558
Bso31I	GGTCTC	1 cut(s)	950
BsoBI	CYCGRG	1 cut(s)	1050
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	7 cut(s)	346, 373, 487, 646, 718, 775, 837
BspACI	CCGC	3 cut(s)	286, 626, 657
BspANI	GGCC	3 cut(s)	150, 209, 558
BspCNI	CTCAG	1 cut(s)	944
BspEI	TCCGGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	291, 735
BspOI	GCTAGC	1 cut(s)	930
BspPI	GGATC	1 cut(s)	845
BspQI	GCTCTTC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	950
BsrDI	GCAATG	1 cut(s)	840
BsrI	ACTGG	4 cut(s)	480, 559, 695, 838
BssECI	CCNNGG	4 cut(s)	151, 607, 1049, 1050
BssMI	GATC	7 cut(s)	346, 373, 487, 646, 718, 775, 837
BssSI	CACGAG	1 cut(s)	1014
Bst2BI	CACGAG	1 cut(s)	1014
Bst2UI	CCWGG	2 cut(s)	152, 609
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	4 cut(s)	116, 245, 396, 996
BstAFI	CTTAAG	1 cut(s)	896
BstC8I	GCNNGC	2 cut(s)	178, 928
BstDEI	CTNAG	2 cut(s)	450, 931
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	3 cut(s)	88, 659, 818
BstKTI	GATC	7 cut(s)	349, 376, 490, 649, 721, 778, 840
BstMAI	GTCTC	2 cut(s)	950, 998
BstMBI	GATC	7 cut(s)	346, 373, 487, 646, 718, 775, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 239, 302, 311
BstNI	CCWGG	2 cut(s)	152, 609
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	4 cut(s)	150, 607, 1049, 1050
BstV1I	GCAGC	4 cut(s)	309, 314, 442, 610
BstV2I	GAAGAC	2 cut(s)	590, 897
BstX2I	RGATCY	2 cut(s)	346, 646
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	2 cut(s)	346, 646
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	150, 209, 558
BtsCI	GGATG	3 cut(s)	88, 659, 818
Cac8I	GCNNGC	2 cut(s)	178, 928
Cfr13I	GGNCC	2 cut(s)	290, 827
Cfr9I	CCCGGG	1 cut(s)	1050
Csp6I	GTAC	4 cut(s)	309, 630, 692, 983
CviAII	CATG	3 cut(s)	230, 353, 560
CviQI	GTAC	4 cut(s)	309, 630, 692, 983
DdeI	CTNAG	2 cut(s)	450, 931
DpnI	GATC	7 cut(s)	348, 375, 489, 648, 720, 777, 839
DpnII	GATC	7 cut(s)	346, 373, 487, 646, 718, 775, 837
DraI	TTTAAA	2 cut(s)	669, 1039
EaeI	YGGCCR	3 cut(s)	148, 207, 556
Eam1104I	CTCTTC	4 cut(s)	116, 245, 396, 996
EarI	CTCTTC	4 cut(s)	116, 245, 396, 996
Ecl136II	GAGCTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	2 cut(s)	290, 827
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	909
Eco88I	CYCGRG	1 cut(s)	1050
EcoICRI	GAGCTC	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	150, 607
EcoT38I	GRGCYC	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	998
FaeI	CATG	3 cut(s)	233, 356, 563
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	3 cut(s)	229, 352, 559
FauI	CCCGC	2 cut(s)	279, 619
Fnu4HI	GCNGC	4 cut(s)	303, 323, 456, 624
FokI	GGATG	3 cut(s)	75, 666, 825
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	4 cut(s)	303, 323, 456, 624
FspBI	CTAG	4 cut(s)	60, 465, 788, 927
GluI	GCNGC	4 cut(s)	303, 323, 456, 624
GsuI	CTGGAG	2 cut(s)	630, 792
HaeIII	GGCC	3 cut(s)	150, 209, 558
HapII	CCGG	3 cut(s)	92, 293, 1051
Hin1II	CATG	3 cut(s)	233, 356, 563
HinfI	GANTC	4 cut(s)	95, 539, 660, 1010
HpaII	CCGG	3 cut(s)	92, 293, 1051
Hpy166II	GTNNAC	3 cut(s)	358, 497, 604
Hpy188I	TCNGA	9 cut(s)	130, 426, 487, 519, 544, 575, 723, 889, 1093
Hpy188III	TCNNGA	9 cut(s)	8, 92, 99, 113, 167, 245, 465, 771, 1014
Hpy8I	GTNNAC	3 cut(s)	358, 497, 604
HpyAV	CCTTC	3 cut(s)	276, 480, 787
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	4 cut(s)	176, 352, 863, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 239, 302, 311
HpyF3I	CTNAG	2 cut(s)	450, 931
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	3 cut(s)	233, 356, 563
Kpn2I	TCCGGA	1 cut(s)	91
Kzo9I	GATC	7 cut(s)	346, 373, 487, 646, 718, 775, 837
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	1075
Lsp1109I	GCAGC	4 cut(s)	309, 314, 442, 610
LweI	GCATC	3 cut(s)	97, 644, 1097
MaeI	CTAG	4 cut(s)	60, 465, 788, 927
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	680, 910
MalI	GATC	7 cut(s)	348, 375, 489, 648, 720, 777, 839
MboI	GATC	7 cut(s)	346, 373, 487, 646, 718, 775, 837
MfeI	CAATTG	1 cut(s)	953
MflI	RGATCY	2 cut(s)	346, 646
MhlI	GDGCHC	1 cut(s)	257
MlsI	TGGCCA	3 cut(s)	150, 209, 558
MluCI	AATT	9 cut(s)	65, 141, 203, 330, 420, 638, 953, 1033, 1058
MluNI	TGGCCA	3 cut(s)	150, 209, 558
MlyI	GAGTC	1 cut(s)	1004
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	8 cut(s)	37, 740, 818, 863, 934, 959, 1066, 1087
Mox20I	TGGCCA	3 cut(s)	150, 209, 558
MroI	TCCGGA	1 cut(s)	91
MscI	TGGCCA	3 cut(s)	150, 209, 558
MseI	TTAA	6 cut(s)	108, 668, 699, 818, 897, 1038
MslI	CAYNNNNRTG	1 cut(s)	599
Msp20I	TGGCCA	3 cut(s)	150, 209, 558
MspA1I	CMGCKG	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	896
MspI	CCGG	3 cut(s)	92, 293, 1051
MspR9I	CCNGG	4 cut(s)	152, 609, 1051, 1052
MunI	CAATTG	1 cut(s)	953
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	152, 609
MwoI	GCNNNNNNNGC	4 cut(s)	230, 239, 302, 311
NciI	CCSGG	2 cut(s)	1051, 1052
NdeII	GATC	7 cut(s)	346, 373, 487, 646, 718, 775, 837
NheI	GCTAGC	1 cut(s)	926
NlaIII	CATG	3 cut(s)	233, 356, 563
NlaIV	GGNNCC	2 cut(s)	291, 735
NmuCI	GTSAC	1 cut(s)	910
NspI	RCATGY	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	245
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	95, 539, 660
PflMI	CCANNNNNTGG	2 cut(s)	701, 958
PkrI	GCNGC	4 cut(s)	304, 324, 457, 625
PleI	GAGTC	1 cut(s)	1004
PpsI	GAGTC	1 cut(s)	1004
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	150, 607
PspGI	CCWGG	2 cut(s)	150, 607
PspN4I	GGNNCC	2 cut(s)	291, 735
PspPI	GGNCC	2 cut(s)	290, 827
PsuI	RGATCY	2 cut(s)	346, 646
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	4 cut(s)	310, 631, 693, 984
RsaNI	GTAC	4 cut(s)	309, 630, 692, 983
RseI	CAYNNNNRTG	1 cut(s)	599
SacI	GAGCTC	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	6 cut(s)	108, 668, 699, 818, 897, 1038
SatI	GCNGC	4 cut(s)	303, 323, 456, 624
Sau3AI	GATC	7 cut(s)	346, 373, 487, 646, 718, 775, 837
Sau96I	GGNCC	2 cut(s)	290, 827
SchI	GAGTC	1 cut(s)	1004
ScrFI	CCNGG	4 cut(s)	152, 609, 1051, 1052
SduI	GDGCHC	1 cut(s)	257
SfaNI	GCATC	3 cut(s)	97, 644, 1097
SinI	GGWCC	2 cut(s)	290, 827
SmaI	CCCGGG	1 cut(s)	1052
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	4 cut(s)	245, 578, 896, 1079
SmoI	CTYRAG	4 cut(s)	245, 578, 896, 1079
Sse9I	AATT	9 cut(s)	65, 141, 203, 330, 420, 638, 953, 1033, 1058
SsiI	CCGC	3 cut(s)	286, 626, 657
SspMI	CTAG	4 cut(s)	60, 465, 788, 927
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	4 cut(s)	150, 607, 1049, 1050
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	418
TaqII	GACCGA	1 cut(s)	844
TasI	AATT	9 cut(s)	65, 141, 203, 330, 420, 638, 953, 1033, 1058
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	3 cut(s)	95, 539, 660
Tru1I	TTAA	6 cut(s)	108, 668, 699, 818, 897, 1038
Tru9I	TTAA	6 cut(s)	108, 668, 699, 818, 897, 1038
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	4 cut(s)	302, 322, 455, 623
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	2 cut(s)	411, 422
TspGWI	ACGGA	1 cut(s)	1022
TspMI	CCCGGG	1 cut(s)	1050
Van91I	CCANNNNNTGG	2 cut(s)	701, 958
Vha464I	CTTAAG	1 cut(s)	896
VpaK11BI	GGWCC	2 cut(s)	290, 827
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	4 cut(s)	65, 330, 420, 1033
XbaI	TCTAGA	1 cut(s)	464
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	993
XmaI	CCCGGG	1 cut(s)	1050
XspI	CTAG	4 cut(s)	60, 465, 788, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.