RLG00000016196

NADPH adrenodoxin oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005068
Physical Location & Seq
Forward (+)
4639059 .. 4643186
4128 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016196

Sequence Viewer

Length: 1194 bp
ATGGCGGTTATTCAATGGAGGACATGGTTATCCAGAACCTTCTCAACCGCCGCTTCTCGTCCTCTCCGCGTCTGCGTCGTCGGAAGTGGACCCGCCGGCTTCTACACGGCGGAGAAGATGCTGAAGGCGCACCAGGAAGCTGAGGTTGACATCATTGACCGATTGCCGACGCCTTTCGGATTAGTCCGCTCCGGCGTAGCACCGGACCATCCTGAAACCAAGATTGTGGTGAACCAGTTTACGAGGGTTGCGCAACACGAACGCTGCTCATTCTTTGGAAATGTCACTCTTGGATCGTCTGTCACACTTCCCGAGCTCCGCGAGCTGTATGATGTGGTTGTGCTTGCATATGGTGCTGAAAGTGATAGAGGTCTTGGTATCGCAGAAGAAGATTTGAGTGGCATATATTCAGCTAGAGAATTTGTGTGGTGGTATAATGGGCATCCGGATTCCAGATACCTTAATCCTGAATTGAAGAGTTCGGATACAGCTGTAATTCTTGGCCAGGGAAATGTAGCTCTTGATGTTGCACGCATTCTCTTACGACCAACAACAGAATTGGCCACGACTGATATTGCCAGCCATGCTTTGTCAGCTCTTGAGAAGAGTATAAAAGATCTGCATGTTCACATAAAGGAAGCTGATCTACTGAAAACCCAAGCAGATGAAGTATGCTTACCTTTCTTTTCTCGCGTGAACCCTGGAGAACAAATGGCTGCAGGTACGGGACAATTTGAAGATCTTGGATGCGGAATCGTTTTAAAGAGCATTGGTTACAAATCAGTACCAGTTAATGGCTTACCCTTTGATGATCGGAAAGGTGTGGTTCCAAATGTTAGAGGGCGAGTTCTAAGTGATACATCTGGAGATCATACACGGCTAGAGAAGGGATTGTATGTATGTGGATGGTTAAAGCGAGGACCAACTGGGATCATTGCTACAAACCTCTATTGTGCAGAAGAAACTGTTGCAAGTATATCTGAAGACCTTAAGCAAGGCATAGTCACATTCTCATCATCTAGCTCAGGCAGGGAGGGTCTCCTCCAATTGCTAGACAACCGAAATGTAAGAGTTGTACCATTTAGTAGATGGGAAGAGATGGACTCACGAGAAAGAGAGCTTGGGAATTTTAAAAACAAGCCCCGGGAAAAATTAGCCACATTGGAGGAGCTTGAGAAAGCATCAGAGGAATAA

Protein Analysis

398

Amino Acids

43.76

Weight (kDa)

5.55

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 23 - 281 9.1e-08 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 794
AccBSI CCGCTC 1 cut(s) 189
AccII CGCG 3 cut(s) 69, 321, 693
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 9 cut(s) 5, 48, 51, 67, 93, 110, 187, 319, 750
AclWI GGATC 2 cut(s) 301, 938
AcoI YGGCCR 2 cut(s) 502, 561
AcsI RAATTY 2 cut(s) 419, 1126
AcuI CTGAAG 2 cut(s) 143, 1002
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 3 cut(s) 724, 786, 1077
AfiI CCNNNNNNNGG 1 cut(s) 794
AflII CTTAAG 1 cut(s) 989
AgsI TTSAA 3 cut(s) 14, 475, 737
AjnI CCWGG 3 cut(s) 132, 504, 700
AjuI GAANNNNNNNTTGG 2 cut(s) 1104, 1136
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 1043
AlwI GGATC 2 cut(s) 301, 938
Ama87I CYCGRG 2 cut(s) 311, 1143
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 2 cut(s) 502, 561
ApeKI GCWGC 2 cut(s) 264, 716
ApoI RAATTY 2 cut(s) 419, 1126
AspLEI GCGC 2 cut(s) 130, 253
AspS9I GGNCC 3 cut(s) 89, 205, 920
AsuC2I CCSGG 2 cut(s) 1144, 1145
AsuHPI GGTGA 1 cut(s) 241
AvaI CYCGRG 2 cut(s) 311, 1143
AvaII GGWCC 3 cut(s) 89, 205, 920
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 2 cut(s) 504, 563
BanII GRGCYC 1 cut(s) 318
BarI GAAGNNNNNNTAC 4 cut(s) 630, 660, 662, 692
BauI CACGAG 1 cut(s) 1107
BbsI GAAGAC 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 251, 703
BccI CCATC 4 cut(s) 216, 900, 1083, 1093
BceAI ACGGC 2 cut(s) 123, 893
BciT130I CCWGG 3 cut(s) 134, 506, 702
BciVI GTATCC 1 cut(s) 478
BcnI CCSGG 2 cut(s) 1144, 1145
BcoDI GTCTC 1 cut(s) 1043
BfaI CTAG 4 cut(s) 414, 881, 1020, 1052
BfmI CTRYAG 1 cut(s) 717
BfrI CTTAAG 1 cut(s) 989
BfuAI ACCTGC 1 cut(s) 710
BfuI GTATCC 1 cut(s) 478
BglII AGATCT 2 cut(s) 616, 739
BisI GCNGC 3 cut(s) 51, 265, 717
BlsI GCNGC 3 cut(s) 52, 266, 718
Bme1390I CCNGG 5 cut(s) 134, 506, 702, 1144, 1145
Bme18I GGWCC 3 cut(s) 89, 205, 920
BmeT110I CYCGRG 2 cut(s) 311, 1143
BmgT120I GGNCC 3 cut(s) 89, 205, 920
BmiI GGNNCC 2 cut(s) 91, 828
BmrFI CCNGG 5 cut(s) 134, 506, 702, 1144, 1145
BmrI ACTGGG 1 cut(s) 936
BmsI GCATC 4 cut(s) 108, 451, 737, 1190
BmuI ACTGGG 1 cut(s) 936
BpiI GAAGAC 1 cut(s) 990
BplI GAGNNNNNCTC 2 cut(s) 1088, 1120
BpmI CTGGAG 2 cut(s) 723, 885
Bpu10I CCTNAGC 2 cut(s) 141, 1024
BpuEI CTTGAG 2 cut(s) 620, 1193
BpuMI CCSGG 2 cut(s) 1144, 1145
BsaHI GRCGYC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 1043
BsaJI CCNNGG 4 cut(s) 505, 700, 1142, 1143
BsaWI WCCGGW 2 cut(s) 202, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 794
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 3 cut(s) 235, 788, 931
Bse3DI GCAATG 1 cut(s) 933
BseAI TCCGGA 1 cut(s) 445
BseBI CCWGG 3 cut(s) 134, 506, 702
BseDI CCNNGG 4 cut(s) 505, 700, 1142, 1143
BseGI GGATG 4 cut(s) 208, 442, 752, 911
BseLI CCNNNNNNNGG 1 cut(s) 794
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 2 cut(s) 132, 1038
BseNI ACTGG 3 cut(s) 235, 788, 931
BseRI GAGGAG 2 cut(s) 1031, 1181
BseXI GCAGC 2 cut(s) 251, 703
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 3 cut(s) 69, 321, 693
BshFI GGCC 2 cut(s) 504, 563
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 2 cut(s) 311, 1143
BsiSI CCGG 5 cut(s) 96, 192, 203, 446, 1144
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 1 cut(s) 794
BsmAI GTCTC 1 cut(s) 1043
BsmFI GGGAC 1 cut(s) 741
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 2 cut(s) 504, 563
Bso31I GGTCTC 1 cut(s) 1043
BsoBI CYCGRG 2 cut(s) 311, 1143
Bsp1286I GDGCHC 1 cut(s) 318
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 7 cut(s) 293, 616, 643, 739, 811, 868, 930
BspACI CCGC 9 cut(s) 5, 48, 51, 67, 93, 110, 187, 319, 750
BspANI GGCC 2 cut(s) 504, 563
BspCNI CTCAG 2 cut(s) 133, 1037
BspEI TCCGGA 1 cut(s) 445
BspFNI CGCG 3 cut(s) 69, 321, 693
BspLI GGNNCC 2 cut(s) 91, 828
BspMAI CTGCAG 1 cut(s) 721
BspMI ACCTGC 1 cut(s) 710
BspPI GGATC 2 cut(s) 301, 938
BspTI CTTAAG 1 cut(s) 989
BspTNI GGTCTC 1 cut(s) 1043
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 933
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 3 cut(s) 235, 788, 931
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 4 cut(s) 505, 700, 1142, 1143
BssMI GATC 7 cut(s) 293, 616, 643, 739, 811, 868, 930
BssNI GRCGYC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 1107
Bst2BI CACGAG 1 cut(s) 1107
Bst2UI CCWGG 3 cut(s) 134, 506, 702
Bst4CI ACNGT 1 cut(s) 967
Bst6I CTCTTC 3 cut(s) 470, 599, 1089
BstACI GRCGYC 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 989
BstAPI GCANNNNNTGC 1 cut(s) 353
BstC8I GCNNGC 5 cut(s) 97, 323, 345, 532, 580
BstDEI CTNAG 3 cut(s) 141, 851, 1024
BstF5I GGATG 4 cut(s) 208, 442, 752, 911
BstFNI CGCG 3 cut(s) 69, 321, 693
BstHHI GCGC 2 cut(s) 130, 253
BstKTI GATC 7 cut(s) 296, 619, 646, 742, 814, 871, 933
BstMAI GTCTC 1 cut(s) 1043
BstMBI GATC 7 cut(s) 293, 616, 643, 739, 811, 868, 930
BstMWI GCNNNNNNNGC 5 cut(s) 127, 322, 353, 584, 593
BstNI CCWGG 3 cut(s) 134, 506, 702
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 5 cut(s) 132, 504, 700, 1142, 1143
BstSFI CTRYAG 1 cut(s) 717
BstUI CGCG 3 cut(s) 69, 321, 693
BstV1I GCAGC 2 cut(s) 251, 703
BstV2I GAAGAC 1 cut(s) 990
BstX2I RGATCY 2 cut(s) 616, 739
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 2 cut(s) 616, 739
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 2 cut(s) 504, 563
BtsCI GGATG 4 cut(s) 208, 442, 752, 911
BveI ACCTGC 1 cut(s) 710
Cac8I GCNNGC 5 cut(s) 97, 323, 345, 532, 580
CfoI GCGC 2 cut(s) 130, 253
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 89, 205, 920
Cfr9I CCCGGG 1 cut(s) 1143
CseI GACGC 3 cut(s) 58, 64, 178
Csp6I GTAC 3 cut(s) 723, 785, 1076
CviAII CATG 3 cut(s) 24, 584, 623
CviQI GTAC 3 cut(s) 723, 785, 1076
DdeI CTNAG 3 cut(s) 141, 851, 1024
DpnI GATC 7 cut(s) 295, 618, 645, 741, 813, 870, 932
DpnII GATC 7 cut(s) 293, 616, 643, 739, 811, 868, 930
DraI TTTAAA 2 cut(s) 762, 1132
EaeI YGGCCR 2 cut(s) 502, 561
Eam1104I CTCTTC 3 cut(s) 470, 599, 1089
EarI CTCTTC 3 cut(s) 470, 599, 1089
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 1043
Eco47I GGWCC 3 cut(s) 89, 205, 920
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 2 cut(s) 143, 1002
Eco88I CYCGRG 2 cut(s) 311, 1143
EcoICRI GAGCTC 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 132, 504, 700
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 3 cut(s) 27, 587, 626
FaqI GGGAC 1 cut(s) 741
FatI CATG 3 cut(s) 23, 583, 622
FauI CCCGC 1 cut(s) 100
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 51, 265, 717
FokI GGATG 4 cut(s) 195, 429, 759, 918
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 3 cut(s) 51, 265, 717
FspBI CTAG 4 cut(s) 414, 881, 1020, 1052
FspI TGCGCA 1 cut(s) 252
GlaI GCGC 2 cut(s) 129, 252
GluI GCNGC 3 cut(s) 51, 265, 717
GsuI CTGGAG 2 cut(s) 723, 885
HaeIII GGCC 2 cut(s) 504, 563
HapII CCGG 5 cut(s) 96, 192, 203, 446, 1144
HgaI GACGC 3 cut(s) 58, 64, 178
HhaI GCGC 2 cut(s) 130, 253
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 3 cut(s) 27, 587, 626
Hin6I GCGC 2 cut(s) 128, 251
HinP1I GCGC 2 cut(s) 128, 251
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 449, 753, 1103
HpaII CCGG 5 cut(s) 96, 192, 203, 446, 1144
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 6 cut(s) 89, 148, 232, 240, 628, 697
Hpy188I TCNGA 6 cut(s) 83, 179, 484, 816, 982, 1186
Hpy8I GTNNAC 6 cut(s) 89, 148, 232, 240, 628, 697
Hpy99I CGWCG 3 cut(s) 80, 83, 172
HpyAV CCTTC 3 cut(s) 49, 118, 880
HpyCH4III ACNGT 1 cut(s) 967
HpyCH4V TGCA 6 cut(s) 347, 530, 622, 719, 956, 971
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 322, 353, 584, 593
HpyF3I CTNAG 3 cut(s) 141, 851, 1024
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 3 cut(s) 27, 587, 626
HspAI GCGC 2 cut(s) 128, 251
Kpn2I TCCGGA 1 cut(s) 445
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 7 cut(s) 293, 616, 643, 739, 811, 868, 930
LmnI GCTCC 3 cut(s) 194, 321, 1168
Lsp1109I GCAGC 2 cut(s) 251, 703
LweI GCATC 4 cut(s) 108, 451, 737, 1190
MaeI CTAG 4 cut(s) 414, 881, 1020, 1052
MaeIII GTNAC 4 cut(s) 283, 301, 773, 1003
MalI GATC 7 cut(s) 295, 618, 645, 741, 813, 870, 932
MbiI CCGCTC 1 cut(s) 189
MboI GATC 7 cut(s) 293, 616, 643, 739, 811, 868, 930
MboII GAAGA 9 cut(s) 127, 398, 401, 487, 616, 749, 971, 995, 1106
MfeI CAATTG 1 cut(s) 1046
MflI RGATCY 2 cut(s) 616, 739
MhlI GDGCHC 1 cut(s) 318
MlsI TGGCCA 2 cut(s) 504, 563
MluCI AATT 8 cut(s) 419, 470, 495, 557, 731, 1046, 1126, 1151
MluNI TGGCCA 2 cut(s) 504, 563
MlyI GAGTC 1 cut(s) 1097
MmeI TCCRAC 1 cut(s) 61
Mox20I TGGCCA 2 cut(s) 504, 563
MroI TCCGGA 1 cut(s) 445
MroNI GCCGGC 1 cut(s) 95
MscI TGGCCA 2 cut(s) 504, 563
MseI TTAA 6 cut(s) 462, 761, 792, 911, 990, 1131
Msp20I TGGCCA 2 cut(s) 504, 563
MspA1I CMGCKG 1 cut(s) 491
MspCI CTTAAG 1 cut(s) 989
MspI CCGG 5 cut(s) 96, 192, 203, 446, 1144
MspR9I CCNGG 5 cut(s) 134, 506, 702, 1144, 1145
MunI CAATTG 1 cut(s) 1046
Mva1269I GAATGC 1 cut(s) 534
MvaI CCWGG 3 cut(s) 134, 506, 702
MvnI CGCG 3 cut(s) 69, 321, 693
MwoI GCNNNNNNNGC 5 cut(s) 127, 322, 353, 584, 593
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 2 cut(s) 1144, 1145
NdeI CATATG 1 cut(s) 349
NdeII GATC 7 cut(s) 293, 616, 643, 739, 811, 868, 930
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 3 cut(s) 27, 587, 626
NlaIV GGNNCC 2 cut(s) 91, 828
NmuCI GTSAC 3 cut(s) 283, 301, 1003
NsbI TGCGCA 1 cut(s) 252
NspI RCATGY 1 cut(s) 626
PctI GAATGC 1 cut(s) 534
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 449, 753
PflMI CCANNNNNTGG 1 cut(s) 794
PkrI GCNGC 3 cut(s) 52, 266, 718
PleI GAGTC 1 cut(s) 1097
PpsI GAGTC 1 cut(s) 1097
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 3 cut(s) 132, 504, 700
PspGI CCWGG 3 cut(s) 132, 504, 700
PspN4I GGNNCC 2 cut(s) 91, 828
PspPI GGNCC 3 cut(s) 89, 205, 920
PstI CTGCAG 1 cut(s) 721
PsuI RGATCY 2 cut(s) 616, 739
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 3 cut(s) 724, 786, 1077
RsaNI GTAC 3 cut(s) 723, 785, 1076
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 6 cut(s) 462, 761, 792, 911, 990, 1131
SatI GCNGC 3 cut(s) 51, 265, 717
Sau3AI GATC 7 cut(s) 293, 616, 643, 739, 811, 868, 930
Sau96I GGNCC 3 cut(s) 89, 205, 920
SchI GAGTC 1 cut(s) 1097
ScrFI CCNGG 5 cut(s) 134, 506, 702, 1144, 1145
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 4 cut(s) 108, 451, 737, 1190
SfcI CTRYAG 1 cut(s) 717
SinI GGWCC 3 cut(s) 89, 205, 920
SmaI CCCGGG 1 cut(s) 1145
SmlI CTYRAG 3 cut(s) 599, 989, 1172
SmoI CTYRAG 3 cut(s) 599, 989, 1172
Sse9I AATT 8 cut(s) 419, 470, 495, 557, 731, 1046, 1126, 1151
SsiI CCGC 9 cut(s) 5, 48, 51, 67, 93, 110, 187, 319, 750
SspMI CTAG 4 cut(s) 414, 881, 1020, 1052
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 5 cut(s) 132, 504, 700, 1142, 1143
TaaI ACNGT 1 cut(s) 967
TaqII GACCGA 1 cut(s) 174
TasI AATT 8 cut(s) 419, 470, 495, 557, 731, 1046, 1126, 1151
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 449, 753
Tru1I TTAA 6 cut(s) 462, 761, 792, 911, 990, 1131
Tru9I TTAA 6 cut(s) 462, 761, 792, 911, 990, 1131
TseFI GTSAC 3 cut(s) 283, 301, 1003
TseI GCWGC 2 cut(s) 264, 716
Tsp45I GTSAC 3 cut(s) 283, 301, 1003
TspDTI ATGAA 1 cut(s) 681
TspMI CCCGGG 1 cut(s) 1143
Van91I CCANNNNNTGG 1 cut(s) 794
Vha464I CTTAAG 1 cut(s) 989
VpaK11BI GGWCC 3 cut(s) 89, 205, 920
XapI RAATTY 2 cut(s) 419, 1126
XceI RCATGY 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 1086
XmaI CCCGGG 1 cut(s) 1143
XspI CTAG 4 cut(s) 414, 881, 1020, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.