Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005068

Physical Location & Seq

Genomic Coordinates Forward (+)

4979750 .. 4981296

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGAATAATCGAATTCGGAAAAGGGTTTATGAGTTGCTTTCTAAGGCTGCTACATCTAGACCTTCGCACCCCAGTTCAGATCAACGTGAACTCCACTTTGTTTTCTTTCGGAAGCCAGATAAGTTTTTAGAATCTGATGAGAGAACTGGCCATGTTTCTGGTGTCAGACTTGAGAAGACAAAGCTCATAGGCGTGAACCCTGGAGAACAAATGGCTGCGGGTACGGGACAATTTGAAGATCTTGGATGCAGAACCGTTTTAAAGAGCATTGGTTACAAATCAGTACCAGTTAATGGCTTACCCTTTGATGATCGGAAAGGTGTGGTTCCAAATGTTAGAGGGCGAGTTGTAGGTGATACATCTGGAGATCATACACGGCTAGAGAAGGGATTGTATGTATGTGGATGGTTAAAGCGAGGACCAACTGGGATTATTGCTACAAACCTCTATTGTGCAGAAGAAACTGTTGCAAGTATATCTGAAGACCTTAAGCAAGGCATAGTCACATTCTCATCAGCTAGCTCAGGCAGGGAGGGTCTCCTCCAATTGCTGGACAACCGAAATGTAAGAGTTGTACCATTTAGTAGATGGGAAGAGATGGACTCACGAGAAAGAGAGCTTGGGAATTTTAAAAACAAGCCCCGGGAAAAATTAGCCACATTGGAGGAGCTTGAGAAAGCATCAGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016491 GO:0016730 GO:0016731 GO:0022900 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

231

Amino Acids

25.88

Weight (kDa)

9.09

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360
fragaria_vesca	FvH4_1g05550
malus_domestica	MD02G1057100.v1.1 MD15G1191600.v1.1
prunus_persica	Prupe.7G225700_v2.0.a1 Prupe.7G225700_v2.0.a1
pyrus_communis	pycom02g04610 pycom02g04620 pycom15g17150 pycom15g17160
rosa_chinensis	RchiOBHm_Chr2g0091251
rosa_laevigata	RLG00000016196
rosa_multiflora	Rmu_sc0002270.1_g000019
rosa_roxburghii	Rroxscaffold_2G00150340
rosa_rugosa	Rorug02G0014900 Rorug02G0015000
rosa_samantha	Rh2AG060600 Rh2BG059400 Rh2CG061200 Rh2CG061300 Rh2DG059900
rosa_wichuraiana	Rw2G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	296, 553
AciI	CCGC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	15, 628
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	3 cut(s)	226, 288, 579
AfiI	CCNNNNNNNGG	2 cut(s)	296, 553
AflII	CTTAAG	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	5 cut(s)	187, 521, 525, 622, 673
AluI	AGCT	5 cut(s)	187, 521, 525, 622, 673
Alw26I	GTCTC	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	645
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	50, 218
ApoI	RAATTY	2 cut(s)	15, 628
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	2 cut(s)	646, 647
AsuHPI	GGTGA	1 cut(s)	368
AsuNHI	GCTAGC	1 cut(s)	521
AvaI	CYCGRG	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	153
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	2 cut(s)	185, 492
BbvI	GCAGC	2 cut(s)	37, 205
BccI	CCATC	3 cut(s)	402, 585, 595
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	646, 647
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	3 cut(s)	60, 383, 522
BfrI	CTTAAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	2 cut(s)	51, 219
BlsI	GCNGC	2 cut(s)	52, 220
Bme1390I	CCNGG	3 cut(s)	204, 646, 647
Bme18I	GGWCC	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	645
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	3 cut(s)	204, 646, 647
BmrI	ACTGGG	2 cut(s)	69, 438
BmsI	GCATC	2 cut(s)	239, 692
BmtI	GCTAGC	1 cut(s)	525
BmuI	ACTGGG	2 cut(s)	69, 438
BpiI	GAAGAC	2 cut(s)	185, 492
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BpmI	CTGGAG	2 cut(s)	225, 387
Bpu10I	CCTNAGC	1 cut(s)	526
BpuEI	CTTGAG	2 cut(s)	194, 695
BpuMI	CCSGG	2 cut(s)	646, 647
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	202, 644, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 553
Bse1I	ACTGG	4 cut(s)	75, 154, 290, 433
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	202, 644, 645
BseGI	GGATG	2 cut(s)	254, 413
BseLI	CCNNNNNNNGG	2 cut(s)	296, 553
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	4 cut(s)	75, 154, 290, 433
BseRI	GAGGAG	2 cut(s)	533, 683
BseXI	GCAGC	2 cut(s)	37, 205
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	645
BsiSI	CCGG	1 cut(s)	646
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	296, 553
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	645
Bsp143I	GATC	4 cut(s)	82, 241, 313, 370
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	539
BspLI	GGNNCC	1 cut(s)	330
BspOI	GCTAGC	1 cut(s)	525
BspTI	CTTAAG	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	4 cut(s)	75, 154, 290, 433
BssECI	CCNNGG	3 cut(s)	202, 644, 645
BssMI	GATC	4 cut(s)	82, 241, 313, 370
BssSI	CACGAG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	259, 469
Bst6I	CTCTTC	1 cut(s)	591
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	45, 526
BstF5I	GGATG	2 cut(s)	254, 413
BstKTI	GATC	4 cut(s)	85, 244, 316, 373
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	82, 241, 313, 370
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	3 cut(s)	202, 644, 645
BstV1I	GCAGC	2 cut(s)	37, 205
BstV2I	GAAGAC	2 cut(s)	185, 492
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	254, 413
Cac8I	GCNNGC	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	422
Cfr9I	CCCGGG	1 cut(s)	645
Csp6I	GTAC	3 cut(s)	225, 287, 578
CviAII	CATG	1 cut(s)	155
CviQI	GTAC	3 cut(s)	225, 287, 578
DdeI	CTNAG	2 cut(s)	45, 526
DpnI	GATC	4 cut(s)	84, 243, 315, 372
DpnII	GATC	4 cut(s)	82, 241, 313, 370
DraI	TTTAAA	2 cut(s)	264, 634
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	158
FaiI	YATR	8 cut(s)	33, 156, 191, 375, 399, 403, 479, 503
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	1 cut(s)	154
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	51, 219
FokI	GGATG	2 cut(s)	261, 420
Fsp4HI	GCNGC	2 cut(s)	51, 219
FspBI	CTAG	3 cut(s)	60, 383, 522
GluI	GCNGC	2 cut(s)	51, 219
GsuI	CTGGAG	2 cut(s)	225, 387
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	646
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	2 cut(s)	134, 605
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	92, 199
Hpy188I	TCNGA	8 cut(s)	21, 82, 114, 139, 170, 318, 484, 688
Hpy188III	TCNNGA	3 cut(s)	60, 366, 609
Hpy8I	GTNNAC	2 cut(s)	92, 199
HpyAV	CCTTC	2 cut(s)	75, 382
HpyCH4III	ACNGT	2 cut(s)	259, 469
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	252, 458, 473
HpyF3I	CTNAG	2 cut(s)	45, 526
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	158
Kzo9I	GATC	4 cut(s)	82, 241, 313, 370
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	2 cut(s)	37, 205
LweI	GCATC	2 cut(s)	239, 692
MaeI	CTAG	3 cut(s)	60, 383, 522
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	275, 505
MalI	GATC	4 cut(s)	84, 243, 315, 372
MboI	GATC	4 cut(s)	82, 241, 313, 370
MboII	GAAGA	6 cut(s)	16, 190, 251, 473, 497, 608
MfeI	CAATTG	1 cut(s)	548
MflI	RGATCY	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	5 cut(s)	15, 233, 548, 628, 653
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	599
MnlI	CCTC	7 cut(s)	335, 413, 458, 529, 554, 661, 682
Mox20I	TGGCCA	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	5 cut(s)	263, 294, 413, 492, 633
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	1 cut(s)	646
MspR9I	CCNGG	3 cut(s)	204, 646, 647
MunI	CAATTG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	204
NciI	CCSGG	2 cut(s)	646, 647
NdeII	GATC	4 cut(s)	82, 241, 313, 370
NheI	GCTAGC	1 cut(s)	521
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	2 cut(s)	296, 553
PkrI	GCNGC	2 cut(s)	52, 220
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	3 cut(s)	226, 288, 579
RsaNI	GTAC	3 cut(s)	225, 287, 578
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	5 cut(s)	263, 294, 413, 492, 633
SatI	GCNGC	2 cut(s)	51, 219
Sau3AI	GATC	4 cut(s)	82, 241, 313, 370
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	3 cut(s)	204, 646, 647
SfaNI	GCATC	2 cut(s)	239, 692
SinI	GGWCC	1 cut(s)	422
SmaI	CCCGGG	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	3 cut(s)	173, 491, 674
SmoI	CTYRAG	3 cut(s)	173, 491, 674
Sse9I	AATT	5 cut(s)	15, 233, 548, 628, 653
SsiI	CCGC	1 cut(s)	221
SspMI	CTAG	3 cut(s)	60, 383, 522
StyD4I	CCNGG	3 cut(s)	202, 644, 645
TaaI	ACNGT	2 cut(s)	259, 469
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	13
TasI	AATT	5 cut(s)	15, 233, 548, 628, 653
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	5 cut(s)	263, 294, 413, 492, 633
Tru9I	TTAA	5 cut(s)	263, 294, 413, 492, 633
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	50, 218
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	645
Van91I	CCANNNNNTGG	2 cut(s)	296, 553
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	2 cut(s)	15, 628
XbaI	TCTAGA	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	588
XmaI	CCCGGG	1 cut(s)	645
XspI	CTAG	3 cut(s)	60, 383, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.