Rh2CG061200

NADPH adrenodoxin oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005068
Physical Location & Seq
Forward (+)
4977285 .. 4979667
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG061200.1

Sequence Viewer

Length: 798 bp
ATGGCGGTTATTCAATTGAGGACATGGTTATCCAGAACCTTCTCAACCGCCGCTTCTCGTCCTCTCCGCGTCTGCGTCGTCGGAAGTGGGCCCGCCGGCTTCTACACGGCGGAGAAGATGCTGAAGGCGCACCAGGAAGCTGAGGTTGACATCATTGACCGATTGCCGACGCCTTTCGGATTAGTCCGCTCCGGCGTAGCACCGGACCATCCTGAAACCAAGATTGTGGTGAACCAGTTTACGAGGGTTGCGCAACACAAACGCTGCTCATTCTTTGGAAATGTCACTCTTGGATCGTCTGTCACACTTCCCGAGCTCCGCGAGCTGTATGATGTGGTTGTGCTTGCATATGGTGCTGAAAGTGATAGAGTTCTTGGTATCCCAGGAGAAGATTTGAGTGGCATATATTCAGCTAGAGAATTTGTGTGGTGGTATAATGGGCATCCGGATTCCAGATACCTTAATCCTGACTTGAAGAGTTCGGATACAGCTGTAATTCTTGGCCAGGGAAATGTAGCTCTTGATGTTGCACGCATTCTCTTACGACCAACAACAGAATTGGCCACGACTGATATTGCCAACCATGCTTTGTCAGCTCTTGAGAAGAGCTCTATAAGGAAAGTATATTTGGTTGGAAGGCGAGGTCCGGCACAAGCAGCTTGTACTGCTAAAGAGCTGCGTGAAATTCTTGGTATAAAAGATCTGCATGTTCACATAAAGGAAGCTGATCTACTGAAAACCCAAGTAGATGAAGTATGCTTACCTTTCTTTTTTCGTTCTCTCTCTCAATATGGGTGA

Protein Analysis

265

Amino Acids

29.24

Weight (kDa)

7.72

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 23 - 197 3.2e-09 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 252
AccBSI CCGCTC 1 cut(s) 189
AccII CGCG 2 cut(s) 69, 321
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 8 cut(s) 5, 48, 51, 67, 93, 110, 187, 319
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 2 cut(s) 502, 561
AcsI RAATTY 2 cut(s) 419, 684
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 1 cut(s) 664
AgsI TTSAA 2 cut(s) 14, 475
AjnI CCWGG 3 cut(s) 132, 382, 504
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
Alw21I GWGCWC 2 cut(s) 318, 611
AlwI GGATC 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 3 cut(s) 89, 502, 561
ApaI GGGCCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 264, 656, 676
ApoI RAATTY 2 cut(s) 419, 684
AspLEI GCGC 2 cut(s) 130, 253
AspS9I GGNCC 4 cut(s) 89, 90, 205, 644
AsuHPI GGTGA 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 2 cut(s) 205, 644
BaeGI GKGCMC 1 cut(s) 93
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 2 cut(s) 504, 563
BanII GRGCYC 3 cut(s) 93, 318, 611
BarI GAAGNNNNNNTAC 4 cut(s) 714, 744, 746, 776
Bbv12I GWGCWC 2 cut(s) 318, 611
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 251, 663, 668
BccI CCATC 1 cut(s) 216
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 3 cut(s) 134, 384, 506
BciVI GTATCC 2 cut(s) 389, 478
BfaI CTAG 1 cut(s) 414
BfuI GTATCC 2 cut(s) 389, 478
BglII AGATCT 1 cut(s) 700
BisI GCNGC 4 cut(s) 51, 265, 657, 677
BlsI GCNGC 4 cut(s) 52, 266, 658, 678
Bme1390I CCNGG 3 cut(s) 134, 384, 506
Bme18I GGWCC 2 cut(s) 205, 644
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 4 cut(s) 89, 90, 205, 644
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 3 cut(s) 134, 384, 506
BmsI GCATC 2 cut(s) 108, 451
BplI GAGNNNNNCTC 2 cut(s) 593, 625
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 620
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 382, 505
BsaWI WCCGGW 2 cut(s) 202, 445
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 445
BseBI CCWGG 3 cut(s) 134, 384, 506
BseDI CCNNGG 2 cut(s) 382, 505
BseGI GGATG 2 cut(s) 208, 442
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 235
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 3 cut(s) 251, 663, 668
Bsh1236I CGCG 2 cut(s) 69, 321
BshFI GGCC 3 cut(s) 91, 504, 563
BsiHKAI GWGCWC 2 cut(s) 318, 611
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 5 cut(s) 96, 192, 203, 446, 647
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 3 cut(s) 91, 504, 563
BsoBI CYCGRG 1 cut(s) 311
Bsp120I GGGCCC 1 cut(s) 89
Bsp1286I GDGCHC 3 cut(s) 93, 318, 611
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 3 cut(s) 293, 700, 727
BspACI CCGC 8 cut(s) 5, 48, 51, 67, 93, 110, 187, 319
BspANI GGCC 3 cut(s) 91, 504, 563
BspCNI CTCAG 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 445
BspFNI CGCG 2 cut(s) 69, 321
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 301
BspQI GCTCTTC 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 382, 505
BssMI GATC 3 cut(s) 293, 700, 727
BssNI GRCGYC 1 cut(s) 170
Bst2UI CCWGG 3 cut(s) 134, 384, 506
Bst6I CTCTTC 2 cut(s) 470, 599
BstACI GRCGYC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 353
BstC8I GCNNGC 5 cut(s) 93, 97, 323, 345, 532
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 208, 442
BstFNI CGCG 2 cut(s) 69, 321
BstHHI GCGC 2 cut(s) 130, 253
BstKTI GATC 3 cut(s) 296, 703, 730
BstMBI GATC 3 cut(s) 293, 700, 727
BstMWI GCNNNNNNNGC 7 cut(s) 127, 322, 353, 584, 593, 656, 665
BstNI CCWGG 3 cut(s) 134, 384, 506
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 3 cut(s) 132, 382, 504
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 2 cut(s) 69, 321
BstV1I GCAGC 3 cut(s) 251, 663, 668
BstX2I RGATCY 1 cut(s) 700
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 700
BsuI GTATCC 2 cut(s) 389, 478
BsuRI GGCC 3 cut(s) 91, 504, 563
BtsCI GGATG 2 cut(s) 208, 442
Cac8I GCNNGC 5 cut(s) 93, 97, 323, 345, 532
CfoI GCGC 2 cut(s) 130, 253
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 4 cut(s) 89, 90, 205, 644
CseI GACGC 3 cut(s) 58, 64, 178
Csp6I GTAC 1 cut(s) 663
CviAII CATG 3 cut(s) 24, 584, 707
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 1 cut(s) 141
DpnI GATC 3 cut(s) 295, 702, 729
DpnII GATC 3 cut(s) 293, 700, 727
EaeI YGGCCR 2 cut(s) 502, 561
Eam1104I CTCTTC 2 cut(s) 470, 599
EarI CTCTTC 2 cut(s) 470, 599
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 2 cut(s) 316, 609
Eco24I GRGCYC 3 cut(s) 93, 318, 611
Eco47I GGWCC 2 cut(s) 205, 644
Eco53kI GAGCTC 2 cut(s) 316, 609
Eco57I CTGAAG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 2 cut(s) 316, 609
EcoRII CCWGG 3 cut(s) 132, 382, 504
EcoT38I GRGCYC 3 cut(s) 93, 318, 611
FaeI CATG 3 cut(s) 27, 587, 710
FatI CATG 3 cut(s) 23, 583, 706
FauI CCCGC 1 cut(s) 100
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 4 cut(s) 51, 265, 657, 677
FokI GGATG 2 cut(s) 195, 429
FriOI GRGCYC 3 cut(s) 93, 318, 611
Fsp4HI GCNGC 4 cut(s) 51, 265, 657, 677
FspBI CTAG 1 cut(s) 414
FspI TGCGCA 1 cut(s) 252
GlaI GCGC 2 cut(s) 129, 252
GluI GCNGC 4 cut(s) 51, 265, 657, 677
HaeIII GGCC 3 cut(s) 91, 504, 563
HapII CCGG 5 cut(s) 96, 192, 203, 446, 647
HgaI GACGC 3 cut(s) 58, 64, 178
HhaI GCGC 2 cut(s) 130, 253
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 3 cut(s) 27, 587, 710
Hin6I GCGC 2 cut(s) 128, 251
HinP1I GCGC 2 cut(s) 128, 251
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 449
HpaII CCGG 5 cut(s) 96, 192, 203, 446, 647
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 4 cut(s) 148, 232, 240, 712
Hpy188I TCNGA 3 cut(s) 83, 179, 484
Hpy188III TCNNGA 8 cut(s) 33, 212, 311, 446, 453, 467, 521, 599
Hpy8I GTNNAC 4 cut(s) 148, 232, 240, 712
Hpy99I CGWCG 3 cut(s) 80, 83, 172
HpyAV CCTTC 3 cut(s) 49, 118, 630
HpyCH4V TGCA 3 cut(s) 347, 530, 706
HpyF10VI GCNNNNNNNGC 7 cut(s) 127, 322, 353, 584, 593, 656, 665
HpyF3I CTNAG 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 3 cut(s) 27, 587, 710
HspAI GCGC 2 cut(s) 128, 251
Kpn2I TCCGGA 1 cut(s) 445
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 293, 700, 727
LguI GCTCTTC 1 cut(s) 599
LmnI GCTCC 2 cut(s) 194, 321
Lsp1109I GCAGC 3 cut(s) 251, 663, 668
LweI GCATC 2 cut(s) 108, 451
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 283, 301
MalI GATC 3 cut(s) 295, 702, 729
MbiI CCGCTC 1 cut(s) 189
MboI GATC 3 cut(s) 293, 700, 727
MboII GAAGA 4 cut(s) 127, 401, 487, 616
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 3 cut(s) 93, 318, 611
MlsI TGGCCA 2 cut(s) 504, 563
MluCI AATT 5 cut(s) 14, 419, 495, 557, 684
MluNI TGGCCA 2 cut(s) 504, 563
MmeI TCCRAC 2 cut(s) 61, 613
MnlI CCTC 5 cut(s) 12, 72, 136, 237, 635
Mox20I TGGCCA 2 cut(s) 504, 563
MroI TCCGGA 1 cut(s) 445
MroNI GCCGGC 1 cut(s) 95
MscI TGGCCA 2 cut(s) 504, 563
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 2 cut(s) 504, 563
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 5 cut(s) 96, 192, 203, 446, 647
MspR9I CCNGG 3 cut(s) 134, 384, 506
MunI CAATTG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 534
MvaI CCWGG 3 cut(s) 134, 384, 506
MvnI CGCG 2 cut(s) 69, 321
MwoI GCNNNNNNNGC 7 cut(s) 127, 322, 353, 584, 593, 656, 665
NaeI GCCGGC 1 cut(s) 97
NdeI CATATG 1 cut(s) 349
NdeII GATC 3 cut(s) 293, 700, 727
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 3 cut(s) 27, 587, 710
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 283, 301
NsbI TGCGCA 1 cut(s) 252
NspI RCATGY 1 cut(s) 710
PciSI GCTCTTC 1 cut(s) 599
PctI GAATGC 1 cut(s) 534
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 4 cut(s) 52, 266, 658, 678
Psp124BI GAGCTC 2 cut(s) 318, 611
Psp6I CCWGG 3 cut(s) 132, 382, 504
PspGI CCWGG 3 cut(s) 132, 382, 504
PspN4I GGNNCC 1 cut(s) 91
PspOMI GGGCCC 1 cut(s) 89
PspPI GGNCC 4 cut(s) 89, 90, 205, 644
PsuI RGATCY 1 cut(s) 700
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
SacI GAGCTC 2 cut(s) 318, 611
SapI GCTCTTC 1 cut(s) 599
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 4 cut(s) 51, 265, 657, 677
Sau3AI GATC 3 cut(s) 293, 700, 727
Sau96I GGNCC 4 cut(s) 89, 90, 205, 644
ScrFI CCNGG 3 cut(s) 134, 384, 506
SduI GDGCHC 3 cut(s) 93, 318, 611
SfaNI GCATC 2 cut(s) 108, 451
SinI GGWCC 2 cut(s) 205, 644
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 5 cut(s) 14, 419, 495, 557, 684
SsiI CCGC 8 cut(s) 5, 48, 51, 67, 93, 110, 187, 319
SspMI CTAG 1 cut(s) 414
SstI GAGCTC 2 cut(s) 318, 611
StyD4I CCNGG 3 cut(s) 132, 382, 504
TaqII GACCGA 1 cut(s) 174
TasI AATT 5 cut(s) 14, 419, 495, 557, 684
TatI WGTACW 1 cut(s) 662
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseFI GTSAC 2 cut(s) 283, 301
TseI GCWGC 3 cut(s) 264, 656, 676
Tsp45I GTSAC 2 cut(s) 283, 301
TspDTI ATGAA 1 cut(s) 765
VpaK11BI GGWCC 2 cut(s) 205, 644
XapI RAATTY 2 cut(s) 419, 684
XceI RCATGY 1 cut(s) 710
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.