Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0017128

Physical Location & Seq

Genomic Coordinates Reverse (-)

5282988 .. 5284415

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCTTGTCCATTGCCTCTTCTGCAATTTCAAGCATTCCAACTAGGGAAGTGCCTTGGAAAATTTCCTCTGGAAAAGTAGTCACAACATGCTTGCTGGGAAGAACAACCACAGCCACCCGTTTACATGCAACAAAAGGAGGAGTCTCAAGTGTATGTGAGCCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGCAGCTCACCTCCTGAATGGCTTGATGGCAGCCTTCCTGGTGATTTTGGCTTTGACCCCCTTGGATTAGGGTCTGATCCAGAATTACTAAAGTGGAATGCACAAGCTGAGCTGATGCATGGCAGATGGGCAATGCTGGCAGTGGCTGGAATTCTAATTCCAGAGTGGCTTGAAAGATTAGGGTTCATAGAGAACTTCTCATGGTTTGAGGCTGGTGAGAGAGAGTACTTTGCAGACCCAACAACCTTATTTGTGGTACAATTAGCACTAATGGGGTGGGTTGAGGGAAGGAGATGGGCTGACATAATTAACCCTGGAAGTGTTGACATTGAGCCTAAGTTTCCCAACAAAAAGAACCCTAAACCAGATGTAGGGTACCCCGGTGGGCTCTGGTTTGACCCCATGATGTGGGGAAGAGGGTCTCCTGAGCCTGTCATGGTTTTGAGAACCAAGGAGATTAAAAACGGGCGTCTTGCGATGCTCGCTTTCGTAGGGTTCTTGTTTCAAGCCCTTTATACAGGGAAAGATCCCATTGACAATTTGATGGCTCATATTGCAGATCCTGGCCACTGCAACGTATTTTCGGTAACGCTTTCACTTCTCAGTATTGAAGCTGATGAGGACTCCTGGAATGAAGGCTTGCAAACACACCAAACTGCCTGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

288

Amino Acids

31.68

Weight (kDa)

5.0

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	69 - 235	1.3e-52	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19150
fragaria_vesca	FvH4_1g09040 FvH4_1g09040
malus_domestica	MD02G1095600.v1.1
prunus_persica	Prupe.7G195500_v2.0.a1
pyrus_communis	pycom02g07570
rosa_chinensis	RchiOBHm_Chr2g0095461
rosa_laevigata	RLG00000016569
rosa_multiflora	Rmu_sc0006076.1_g000012
rosa_roxburghii	Rroxscaffold_2G00146320
rosa_rugosa	Rorug02G0051300
rosa_samantha	Rh2DG100200
rosa_wichuraiana	Rw2G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	570
AccB1I	GGYRCC	1 cut(s)	570
AccB7I	CCANNNNNTGG	1 cut(s)	603
AclWI	GGATC	3 cut(s)	266, 716, 749
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	2 cut(s)	63, 345
AcyI	GRCGYC	1 cut(s)	664
AfaI	GTAC	3 cut(s)	422, 453, 572
AfiI	CCNNNNNNNGG	2 cut(s)	566, 603
AgsI	TTSAA	4 cut(s)	33, 368, 701, 806
AjnI	CCWGG	6 cut(s)	193, 232, 508, 757, 821, 854
AluBI	AGCT	4 cut(s)	201, 302, 307, 809
AluI	AGCT	4 cut(s)	201, 302, 307, 809
Alw26I	GTCTC	2 cut(s)	151, 621
AlwI	GGATC	3 cut(s)	266, 716, 749
AlwNI	CAGNNNCTG	2 cut(s)	341, 758
AoxI	GGCC	3 cut(s)	3, 179, 760
ApeKI	GCWGC	2 cut(s)	198, 225
ApoI	RAATTY	2 cut(s)	63, 345
Asp718I	GGTACC	1 cut(s)	570
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	195, 248, 422
BaeI	ACNNNNGTAYC	2 cut(s)	562, 595
BalI	TGGCCA	1 cut(s)	762
BanI	GGYRCC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	210, 237
BccI	CCATC	4 cut(s)	215, 315, 483, 733
BciT130I	CCWGG	6 cut(s)	195, 234, 510, 759, 823, 856
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	151, 621
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	199, 226
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	2 cut(s)	200, 227
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	7 cut(s)	195, 234, 510, 576, 759, 823, 856
BmiI	GGNNCC	2 cut(s)	191, 572
BmrFI	CCNGG	7 cut(s)	195, 234, 510, 576, 759, 823, 856
BmsI	GCATC	2 cut(s)	300, 663
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	664
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	6 cut(s)	56, 193, 256, 508, 574, 645
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 603
Bse3DI	GCAATG	2 cut(s)	12, 333
BseBI	CCWGG	6 cut(s)	195, 234, 510, 759, 823, 856
BseDI	CCNNGG	6 cut(s)	56, 193, 256, 508, 574, 645
BseLI	CCNNNNNNNGG	2 cut(s)	566, 603
BseMI	GCAATG	2 cut(s)	12, 333
BseMII	CTCAG	3 cut(s)	294, 612, 811
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	210, 237
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	3 cut(s)	5, 181, 762
BshNI	GGYRCC	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	576
BslI	CCNNNNNNNGG	2 cut(s)	566, 603
BsmAI	GTCTC	2 cut(s)	151, 621
BsmI	GAATGC	2 cut(s)	36, 298
BsnI	GGCC	3 cut(s)	5, 181, 762
Bso31I	GGTCTC	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	3 cut(s)	271, 721, 754
Bsp1720I	GCTNAGC	1 cut(s)	303
BspANI	GGCC	3 cut(s)	5, 181, 762
BspCNI	CTCAG	3 cut(s)	295, 613, 810
BspLI	GGNNCC	2 cut(s)	191, 572
BspPI	GGATC	3 cut(s)	266, 716, 749
BspT107I	GGYRCC	1 cut(s)	570
BspTNI	GGTCTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	12, 333
BssECI	CCNNGG	6 cut(s)	56, 193, 256, 508, 574, 645
BssMI	GATC	3 cut(s)	271, 721, 754
BssNI	GRCGYC	1 cut(s)	664
BssT1I	CCWWGG	3 cut(s)	56, 256, 645
Bst2UI	CCWGG	6 cut(s)	195, 234, 510, 759, 823, 856
Bst6I	CTCTTC	2 cut(s)	25, 604
BstACI	GRCGYC	1 cut(s)	664
BstC8I	GCNNGC	4 cut(s)	95, 333, 678, 836
BstDEI	CTNAG	4 cut(s)	303, 531, 621, 797
BstKTI	GATC	3 cut(s)	274, 724, 757
BstMAI	GTCTC	2 cut(s)	151, 621
BstMBI	GATC	3 cut(s)	271, 721, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 332, 677, 749
BstNI	CCWGG	6 cut(s)	195, 234, 510, 759, 823, 856
BstNSI	RCATGY	2 cut(s)	93, 131
BstSCI	CCNGG	7 cut(s)	193, 232, 508, 574, 757, 821, 854
BstV1I	GCAGC	2 cut(s)	210, 237
BstX2I	RGATCY	2 cut(s)	721, 754
BstYI	RGATCY	2 cut(s)	721, 754
BsuRI	GGCC	3 cut(s)	5, 181, 762
BtgZI	GCGATG	1 cut(s)	686
BtsI	GCAGTG	2 cut(s)	342, 763
BtsIMutI	CAGTG	2 cut(s)	342, 763
Cac8I	GCNNGC	4 cut(s)	95, 333, 678, 836
CaiI	CAGNNNCTG	2 cut(s)	341, 758
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	3 cut(s)	421, 452, 571
CviAII	CATG	6 cut(s)	90, 128, 314, 396, 598, 631
CviQI	GTAC	3 cut(s)	421, 452, 571
DdeI	CTNAG	4 cut(s)	303, 531, 621, 797
DpnI	GATC	3 cut(s)	273, 723, 756
DpnII	GATC	3 cut(s)	271, 721, 754
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	2 cut(s)	25, 604
EarI	CTCTTC	2 cut(s)	25, 604
Eco130I	CCWWGG	3 cut(s)	56, 256, 645
Eco24I	GRGCYC	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	6 cut(s)	193, 232, 508, 757, 821, 854
EcoT14I	CCWWGG	3 cut(s)	56, 256, 645
EcoT22I	ATGCAT	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	3 cut(s)	56, 256, 645
FaeI	CATG	6 cut(s)	93, 131, 317, 399, 601, 634
FatI	CATG	6 cut(s)	89, 127, 313, 395, 597, 630
Fnu4HI	GCNGC	2 cut(s)	199, 226
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	2 cut(s)	199, 226
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	199, 226
GsaI	CCCAGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	5, 181, 762
HapII	CCGG	1 cut(s)	576
HgaI	GACGC	1 cut(s)	653
Hin1I	GRCGYC	1 cut(s)	664
Hin1II	CATG	6 cut(s)	93, 131, 317, 399, 601, 634
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	144, 818
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	3 cut(s)	195, 248, 422
Hpy166II	GTNNAC	2 cut(s)	125, 520
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	6 cut(s)	72, 173, 209, 275, 356, 620
Hpy8I	GTNNAC	2 cut(s)	125, 520
HpyAV	CCTTC	3 cut(s)	239, 477, 824
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	8 cut(s)	26, 131, 296, 313, 428, 752, 768, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 332, 677, 749
HpyF3I	CTNAG	4 cut(s)	303, 531, 621, 797
HpySE526I	ACGT	1 cut(s)	771
Hsp92I	GRCGYC	1 cut(s)	664
Hsp92II	CATG	6 cut(s)	93, 131, 317, 399, 601, 634
KpnI	GGTACC	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	271, 721, 754
Lsp1109I	GCAGC	2 cut(s)	210, 237
LweI	GCATC	2 cut(s)	300, 663
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	2 cut(s)	82, 781
MalI	GATC	3 cut(s)	273, 723, 756
MboI	GATC	3 cut(s)	271, 721, 754
MboII	GAAGA	3 cut(s)	12, 114, 621
MflI	RGATCY	2 cut(s)	721, 754
MhlI	GDGCHC	1 cut(s)	585
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	9 cut(s)	27, 63, 278, 345, 351, 455, 501, 733, 859
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	2 cut(s)	153, 812
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	28, 79, 134, 180, 216, 397, 472, 605, 808
Mox20I	TGGCCA	1 cut(s)	762
Mph1103I	ATGCAT	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	3 cut(s)	504, 654, 862
Msp20I	TGGCCA	1 cut(s)	762
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	7 cut(s)	195, 234, 510, 576, 759, 823, 856
Mva1269I	GAATGC	2 cut(s)	36, 298
MvaI	CCWGG	6 cut(s)	195, 234, 510, 759, 823, 856
MwoI	GCNNNNNNNGC	4 cut(s)	23, 332, 677, 749
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	3 cut(s)	271, 721, 754
NlaIII	CATG	6 cut(s)	93, 131, 317, 399, 601, 634
NlaIV	GGNNCC	2 cut(s)	191, 572
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	315
NspI	RCATGY	2 cut(s)	93, 131
PctI	GAATGC	2 cut(s)	36, 298
PflMI	CCANNNNNTGG	1 cut(s)	603
PfoI	TCCNGGA	1 cut(s)	821
PkrI	GCNGC	2 cut(s)	200, 227
PleI	GAGTC	2 cut(s)	152, 812
PpsI	GAGTC	2 cut(s)	152, 812
Psp6I	CCWGG	6 cut(s)	193, 232, 508, 757, 821, 854
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	6 cut(s)	193, 232, 508, 757, 821, 854
PspN4I	GGNNCC	2 cut(s)	191, 572
PstNI	CAGNNNCTG	2 cut(s)	341, 758
PsuI	RGATCY	2 cut(s)	721, 754
RsaI	GTAC	3 cut(s)	422, 453, 572
RsaNI	GTAC	3 cut(s)	421, 452, 571
SaqAI	TTAA	3 cut(s)	504, 654, 862
SatI	GCNGC	2 cut(s)	199, 226
Sau3AI	GATC	3 cut(s)	271, 721, 754
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	2 cut(s)	153, 812
ScrFI	CCNGG	7 cut(s)	195, 234, 510, 576, 759, 823, 856
SduI	GDGCHC	1 cut(s)	585
SetI	ASST	7 cut(s)	203, 208, 304, 309, 443, 774, 811
SfaNI	GCATC	2 cut(s)	300, 663
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	9 cut(s)	27, 63, 278, 345, 351, 455, 501, 733, 859
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	7 cut(s)	193, 232, 508, 574, 757, 821, 854
StyI	CCWWGG	3 cut(s)	56, 256, 645
TaiI	ACGT	1 cut(s)	774
TasI	AATT	9 cut(s)	27, 63, 278, 345, 351, 455, 501, 733, 859
TatI	WGTACW	1 cut(s)	420
Tru1I	TTAA	3 cut(s)	504, 654, 862
Tru9I	TTAA	3 cut(s)	504, 654, 862
TscAI	CASTG	2 cut(s)	342, 770
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	198, 225
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	370, 843
TspRI	CASTG	2 cut(s)	342, 770
Van91I	CCANNNNNTGG	1 cut(s)	603
XapI	RAATTY	2 cut(s)	63, 345
XceI	RCATGY	2 cut(s)	93, 131
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.