pycom02g07690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013587
Physical Location & Seq
Forward (+)
5401684 .. 5403273
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGGGGACGCGAAACGACGTCGTGGAGATTGATAGCTTGGAGGAGGGGTTGCTGTCAGAAACTGCAACCGAAGCAGAAGGTGAAGAACCAGTTCTGTATTCAGCTTCGTTTCAGGAAACGGAGGAGAATTTTGTGAAGTACCAAACTGCACGATGGCTTCTCTACTCTGGGCTTTTGGTACTGGCATGGGGGATTGGGATTTTTATGCTGCTTTATCTGCCCGTCCGCCGCTACATTCTGCGAAAGGATATTCGATCGCGGAAGCTCTATCTAACTCCCAATGCCATTGTCTACAAGTATGCAAAGCCGGTTCCATTTCCAATTTTCGGGGTGTTGAAGAAGGAGAAGCATTTTTTGTTGCCTTCAGTAGCGGATGTTGTGATCGAGCAAGGATATCTGCAGTCTCTCTTCGGTGTCTACTCACTTAGAATAGAACATGTTGGTGTCAGAAGGCCGGCAAGCGATGATGTTCATATTCATGGCATTGCGAATCCCAGTGCTTTCAGGAAGGCAGTCCTCATGCGCCTTTCAAGCATGACTAACGAGGTCTTCTCTAGACAAATTTCCACACTTGAAGATATTCCAAATTTGAAGCTTCAAGGGTCCCCGTCAAAGTCTCTCAGGTATGGGGATCTAGTGCTACTGCAAAAACTTGAGGAAGTTGGAAGTTCTGTAAAGAGGGTTCAAACTATACTCGAGGAGCAACACCCTCAAACACCAGAACCTACAGATGGAAGCGTGCGAAGAGTGTTAAATTTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.82

Weight (kDa)

6.99

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 82 - 180 1.1e-47 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09130
malus_domestica MD02G1096900.v1.1 MD15G1221700.v1.1
prunus_persica Prupe.7G194000_v2.0.a1
pyrus_communis pycom02g07690 pycom15g19620
rosa_chinensis RchiOBHm_Chr2g0095521
rosa_laevigata RLG00000016575
rosa_multiflora Rmu_sc0002541.1_g000031
rosa_roxburghii Rroxscaffold_2G00146230
rosa_rugosa Rorug02G0052100 Rorug02G0471700
rosa_samantha Rh2AG099900 Rh2BG101300 Rh2CG103500 Rh2DG100800
rosa_wichuraiana Rw2G007580 Rw7G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 21
AccI GTMKAC 2 cut(s) 291, 417
AccII CGCG 2 cut(s) 10, 259
AciI CCGC 4 cut(s) 226, 229, 259, 371
AclWI GGATC 1 cut(s) 639
AcsI RAATTY 4 cut(s) 127, 561, 586, 754
AcuI CTGAAG 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 2 cut(s) 140, 180
AfiI CCNNNNNNNGG 2 cut(s) 326, 731
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 6 cut(s) 337, 531, 575, 592, 599, 686
AluBI AGCT 4 cut(s) 36, 104, 265, 595
AluI AGCT 4 cut(s) 36, 104, 265, 595
Alw26I GTCTC 2 cut(s) 408, 621
AlwI GGATC 1 cut(s) 639
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 695
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 4 cut(s) 127, 561, 586, 754
Asp700I GAANNNNTTC 2 cut(s) 90, 579
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 603
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 147, 725
BcoDI GTCTC 2 cut(s) 408, 621
BfaI CTAG 2 cut(s) 555, 635
BfmI CTRYAG 2 cut(s) 398, 726
BisI GCNGC 2 cut(s) 209, 229
BlsI GCNGC 2 cut(s) 210, 230
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 695
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 3 cut(s) 312, 604, 605
BmrI ACTGGG 1 cut(s) 489
BmuI ACTGGG 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 541
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpuEI CTTGAG 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 731
Bse118I RCCGGY 2 cut(s) 307, 454
Bse1I ACTGG 3 cut(s) 89, 186, 495
Bse3DI GCAATG 1 cut(s) 483
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 326, 731
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 634
BseNI ACTGG 3 cut(s) 89, 186, 495
BseRI GAGGAG 3 cut(s) 56, 137, 713
BseXI GCAGC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 2 cut(s) 10, 259
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 454
BsiEI CGRYCG 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 2 cut(s) 308, 455
BslFI GGGAC 2 cut(s) 19, 589
BslI CCNNNNNNNGG 2 cut(s) 326, 731
BsmAI GTCTC 2 cut(s) 408, 621
BsmFI GGGAC 2 cut(s) 19, 589
BsnI GGCC 1 cut(s) 454
BsoBI CYCGRG 1 cut(s) 695
Bsp143I GATC 3 cut(s) 254, 381, 631
BspACI CCGC 4 cut(s) 226, 229, 259, 371
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 633
BspFNI CGCG 2 cut(s) 10, 259
BspLI GGNNCC 3 cut(s) 312, 604, 605
BspMAI CTGCAG 1 cut(s) 402
BspPI GGATC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 2 cut(s) 307, 454
BsrI ACTGG 3 cut(s) 89, 186, 495
BssAI RCCGGY 2 cut(s) 307, 454
BssMI GATC 3 cut(s) 254, 381, 631
BssNI GRCGYC 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 413, 739
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 3 cut(s) 456, 460, 740
BstDEI CTNAG 2 cut(s) 425, 620
BstF5I GGATG 1 cut(s) 379
BstFNI CGCG 2 cut(s) 10, 259
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 3 cut(s) 257, 384, 634
BstMAI GTCTC 2 cut(s) 408, 621
BstMBI GATC 3 cut(s) 254, 381, 631
BstMCI CGRYCG 1 cut(s) 257
BstMWI GCNNNNNNNGC 3 cut(s) 71, 217, 531
BstNSI RCATGY 1 cut(s) 440
BstSFI CTRYAG 2 cut(s) 398, 726
BstUI CGCG 2 cut(s) 10, 259
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuRI GGCC 1 cut(s) 454
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 3 cut(s) 456, 460, 740
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 1 cut(s) 525
Cfr10I RCCGGY 2 cut(s) 307, 454
Cfr13I GGNCC 1 cut(s) 603
CseI GACGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 139, 179
CviAII CATG 5 cut(s) 186, 437, 479, 520, 535
CviJI RGCY 8 cut(s) 36, 104, 157, 172, 265, 307, 454, 595
CviKI_1 RGCY 8 cut(s) 36, 104, 157, 172, 265, 307, 454, 595
CviQI GTAC 2 cut(s) 139, 179
DdeI CTNAG 2 cut(s) 425, 620
DpnI GATC 3 cut(s) 256, 383, 633
DpnII GATC 3 cut(s) 254, 381, 631
Eam1104I CTCTTC 2 cut(s) 413, 739
EarI CTCTTC 2 cut(s) 413, 739
EciI GGCGGA 1 cut(s) 215
Eco32I GATATC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 603
Eco57I CTGAAG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 695
EcoO109I RGGNCCY 1 cut(s) 603
EcoRV GATATC 1 cut(s) 395
FaeI CATG 5 cut(s) 189, 440, 482, 523, 538
FaqI GGGAC 2 cut(s) 19, 589
FatI CATG 5 cut(s) 185, 436, 478, 519, 534
FblI GTMKAC 2 cut(s) 291, 417
Fnu4HI GCNGC 2 cut(s) 209, 229
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 2 cut(s) 209, 229
FspBI CTAG 2 cut(s) 555, 635
GlaI GCGC 1 cut(s) 524
GluI GCNGC 2 cut(s) 209, 229
HaeIII GGCC 1 cut(s) 454
HapII CCGG 2 cut(s) 308, 455
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 5 cut(s) 189, 440, 482, 523, 538
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 1 cut(s) 490
HpaII CCGG 2 cut(s) 308, 455
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 292, 418
Hpy188I TCNGA 2 cut(s) 58, 449
Hpy188III TCNNGA 3 cut(s) 113, 505, 555
Hpy8I GTNNAC 2 cut(s) 292, 418
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 5 cut(s) 71, 334, 372, 444, 502
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 5 cut(s) 65, 149, 302, 400, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 217, 531
HpyF3I CTNAG 2 cut(s) 425, 620
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 5 cut(s) 189, 440, 482, 523, 538
HspAI GCGC 1 cut(s) 523
KflI GGGWCCC 1 cut(s) 603
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 254, 381, 631
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 1 cut(s) 195
MaeI CTAG 2 cut(s) 555, 635
MaeII ACGT 1 cut(s) 18
MalI GATC 3 cut(s) 256, 383, 633
MboI GATC 3 cut(s) 254, 381, 631
MboII GAAGA 6 cut(s) 95, 349, 400, 541, 587, 756
MflI RGATCY 1 cut(s) 631
MluCI AATT 5 cut(s) 127, 321, 561, 586, 754
MmeI TCCRAC 1 cut(s) 643
MnlI CCTC 9 cut(s) 34, 37, 115, 527, 538, 649, 672, 691, 720
MroNI GCCGGC 1 cut(s) 454
MroXI GAANNNNTTC 2 cut(s) 90, 579
MseI TTAA 1 cut(s) 752
MslI CAYNNNNRTG 2 cut(s) 441, 477
MspI CCGG 2 cut(s) 308, 455
MvnI CGCG 2 cut(s) 10, 259
MwoI GCNNNNNNNGC 3 cut(s) 71, 217, 531
NaeI GCCGGC 1 cut(s) 456
NdeII GATC 3 cut(s) 254, 381, 631
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 5 cut(s) 189, 440, 482, 523, 538
NlaIV GGNNCC 3 cut(s) 312, 604, 605
NspI RCATGY 1 cut(s) 440
PaeR7I CTCGAG 1 cut(s) 695
PciI ACATGT 1 cut(s) 436
PdiI GCCGGC 1 cut(s) 456
PdmI GAANNNNTTC 2 cut(s) 90, 579
PfeI GAWTC 1 cut(s) 490
PkrI GCNGC 2 cut(s) 210, 230
Ple19I CGATCG 1 cut(s) 257
PpuMI RGGWCCY 1 cut(s) 603
PscI ACATGT 1 cut(s) 436
Psp5II RGGWCCY 1 cut(s) 603
PspN4I GGNNCC 3 cut(s) 312, 604, 605
PspPI GGNCC 1 cut(s) 603
PspPPI RGGWCCY 1 cut(s) 603
PspXI VCTCGAGB 1 cut(s) 695
PsrI GAACNNNNNNTAC 2 cut(s) 666, 698
PstI CTGCAG 1 cut(s) 402
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 631
PvuI CGATCG 1 cut(s) 257
RsaI GTAC 2 cut(s) 140, 180
RsaNI GTAC 2 cut(s) 139, 179
RseI CAYNNNNRTG 2 cut(s) 441, 477
SaqAI TTAA 1 cut(s) 752
SatI GCNGC 2 cut(s) 209, 229
Sau3AI GATC 3 cut(s) 254, 381, 631
Sau96I GGNCC 1 cut(s) 603
SetI ASST 9 cut(s) 21, 38, 82, 106, 267, 549, 597, 626, 727
SfcI CTRYAG 2 cut(s) 398, 726
Sfr274I CTCGAG 1 cut(s) 695
SinI GGWCC 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 695
SmiMI CAYNNNNRTG 2 cut(s) 441, 477
SmlI CTYRAG 2 cut(s) 653, 695
SmoI CTYRAG 2 cut(s) 653, 695
Sse9I AATT 5 cut(s) 127, 321, 561, 586, 754
SsiI CCGC 4 cut(s) 226, 229, 259, 371
SspMI CTAG 2 cut(s) 555, 635
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 253, 384, 696
TasI AATT 5 cut(s) 127, 321, 561, 586, 754
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 1 cut(s) 752
Tru9I TTAA 1 cut(s) 752
TscAI CASTG 1 cut(s) 502
TseI GCWGC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 461, 467
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 603
XapI RAATTY 4 cut(s) 127, 561, 586, 754
XbaI TCTAGA 1 cut(s) 554
XceI RCATGY 1 cut(s) 440
XhoI CTCGAG 1 cut(s) 695
XmiI GTMKAC 2 cut(s) 291, 417
XmnI GAANNNNTTC 2 cut(s) 90, 579
XspI CTAG 2 cut(s) 555, 635
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.