Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0018898

Physical Location & Seq

Genomic Coordinates Forward (+)

5606036 .. 5608098

Gene Structure 2063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACCTTTTATATAGCCTTTGGAATCCTCTTGGGTAAAATCACCAATTTGTTTATATTTTTCCAGACCATAGAAAGCAGCCTCCGGAAGAGTTCAGGTGAACGTGCCTCCCAAACAAATGCAGATGGTGAAAGATTGAAGAAAGGCAGTCACATTAACCGTAGCTTGTTGACACTCACAACCGTTATCAGGAAGCTAAGAGCAAACAAGGAACACACTCTCGTCCAGAGAGAAATGCTGACAGCGGACGAGAGAGAAATGCTGTACGCGAAATGGGTGATTCCGTCCGGAGGGAAACAGAGTAGGCTGCAGCTGGTGAACAAGTTGTGGACAGACCCCCATAACATGCAAAACGTGCAGGAAAGCGCTGAAGTTGTTGCGAAGCTGGTAGGCTTCCGAAAATCGGGTGAGCACATTAGCAAGGGGATGTTTGAACTGAATTACCCGTCGGATAAGAAGACGTGGATGGGGTGGAACTTGATATCAAATCTTTTGATTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

9.94

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	33 - 72	1e-07	Kinesin motor domain
DUF3490	PF11995	52 - 148	4.2e-24	Domain of unknown function (DUF3490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018898)

Species	Orthologous Gene IDs
malus_domestica	MD02G1101600.v1.1 MD02G1102000.v1.1
pyrus_communis	pycom02g07970
rosa_multiflora	Rmu_sc0010835.1_g000003 Rmu_sc0021237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087080 Rroxscaffold_3G00267430 Rroxscaffold_6G00414250
rosa_wichuraiana	Rw7G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AccIII	TCCGGA	2 cut(s)	84, 287
AciI	CCGC	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	266
AfeI	AGCGCT	1 cut(s)	367
AfiI	CCNNNNNNNGG	3 cut(s)	189, 290, 403
AgsI	TTSAA	2 cut(s)	139, 434
AjiI	CACGTC	1 cut(s)	462
AluBI	AGCT	4 cut(s)	165, 196, 313, 385
AluI	AGCT	4 cut(s)	165, 196, 313, 385
Alw21I	GWGCWC	1 cut(s)	414
Aor13HI	TCCGGA	2 cut(s)	84, 287
Aor51HI	AGCGCT	1 cut(s)	367
ApeKI	GCWGC	3 cut(s)	78, 307, 310
AspLEI	GCGC	1 cut(s)	368
AsuHPI	GGTGA	6 cut(s)	34, 110, 140, 289, 328, 419
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	90, 294, 322
BccI	CCATC	2 cut(s)	119, 460
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	369
BisI	GCNGC	3 cut(s)	79, 308, 311
BlsI	GCNGC	3 cut(s)	80, 309, 312
BmgBI	CACGTC	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	464
BsaWI	WCCGGW	2 cut(s)	84, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 290, 403
BseAI	TCCGGA	2 cut(s)	84, 287
BseGI	GGATG	2 cut(s)	432, 471
BseLI	CCNNNNNNNGG	3 cut(s)	189, 290, 403
BseXI	GCAGC	3 cut(s)	90, 294, 322
BsgI	GTGCAG	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	85, 288
BslI	CCNNNNNNNGG	3 cut(s)	189, 290, 403
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp13I	TCCGGA	2 cut(s)	84, 287
BspACI	CCGC	1 cut(s)	245
BspEI	TCCGGA	2 cut(s)	84, 287
BspFNI	CGCG	1 cut(s)	269
BspMAI	CTGCAG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	161, 184
Bst6I	CTCTTC	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	432, 471
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNSI	RCATGY	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	90, 294, 322
BstV2I	GAAGAC	1 cut(s)	464
BtrI	CACGTC	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	432, 471
CfoI	GCGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	8 cut(s)	17, 81, 165, 196, 307, 313, 385, 393
CviKI_1	RGCY	8 cut(s)	17, 81, 165, 196, 307, 313, 385, 393
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	483
Eco47III	AGCGCT	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	483
FaeI	CATG	1 cut(s)	349
FaiI	YATR	6 cut(s)	12, 14, 56, 71, 342, 347
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	79, 308, 311
FokI	GGATG	2 cut(s)	439, 478
Fsp4HI	GCNGC	3 cut(s)	79, 308, 311
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	3 cut(s)	79, 308, 311
HaeII	RGCGCY	1 cut(s)	369
HapII	CCGG	2 cut(s)	85, 288
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	3 cut(s)	24, 280, 496
HpaII	CCGG	2 cut(s)	85, 288
HphI	GGTGA	6 cut(s)	34, 110, 140, 289, 328, 419
Hpy166II	GTNNAC	4 cut(s)	101, 171, 319, 330
Hpy188I	TCNGA	2 cut(s)	398, 451
Hpy188III	TCNNGA	5 cut(s)	64, 85, 190, 226, 288
Hpy8I	GTNNAC	4 cut(s)	101, 171, 319, 330
Hpy99I	CGWCG	1 cut(s)	451
HpyCH4III	ACNGT	2 cut(s)	161, 184
HpyCH4IV	ACGT	3 cut(s)	103, 354, 461
HpyCH4V	TGCA	4 cut(s)	122, 310, 349, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	3 cut(s)	103, 354, 461
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	366
Kpn2I	TCCGGA	2 cut(s)	84, 287
LpnPI	CCDG	9 cut(s)	77, 81, 98, 175, 239, 299, 301, 344, 371
Lsp1109I	GCAGC	3 cut(s)	90, 294, 322
MaeII	ACGT	3 cut(s)	103, 354, 461
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	3 cut(s)	100, 151, 469
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	2 cut(s)	46, 439
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	4 cut(s)	38, 92, 118, 284
MroI	TCCGGA	2 cut(s)	84, 287
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	245, 313
MspI	CCGG	2 cut(s)	85, 288
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	349
PfeI	GAWTC	3 cut(s)	24, 280, 496
PkrI	GCNGC	3 cut(s)	80, 309, 312
PstI	CTGCAG	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	79, 308, 311
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	9 cut(s)	8, 100, 106, 167, 198, 315, 357, 387, 464
SfcI	CTRYAG	1 cut(s)	308
Sse9I	AATT	2 cut(s)	46, 439
SsiI	CCGC	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	161, 184
TaiI	ACGT	3 cut(s)	106, 357, 464
TasI	AATT	2 cut(s)	46, 439
TfiI	GAWTC	3 cut(s)	24, 280, 496
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	3 cut(s)	78, 307, 310
Tsp45I	GTSAC	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	273
XceI	RCATGY	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.