pycom02g09550

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010681
Physical Location & Seq
Reverse (-)
6603102 .. 6605462
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09550.3

Sequence Viewer

Length: 594 bp
ATGGCTTTCGATGAGGACGTGGAGAGCTGCGGCAGCAGAGCGGTGCTGTCGTCTCAGGCGCAGCCTCGCCACCACCGGCAGAAGCTGGAGGTCTACAACGAGGTGCTCCGACGAATCCAAGAGTCCAATTTTGAGGAGGCCAATCTTCCTGGATTTGATGATCAGCTATGGCTTCATTTCAATCGGTTGCCTGCTCGTTACGCGTTGGATGTGAATGTGGAGAGGGCAGAAGATGTTCTAGCACATAAGAGATTGCTGCAATTTGCAGAAGACCCTGCTAATCAACCTGCCTTTCAAGTTCGCTCTGTGCAGGTTTATCCTGTCTTCGATGGAAATTCTGTTGACTCGGTCCATTCAGATTCTTCGATGAAAGAAGATGCACAAAGTTCTTACAGTTACTCTAACGGACGAGGGATTCATGCACCTCCTACCTTTGGTTCATCTCCTACTCTTGACGCACTGGCACTTCAAGCCAATAGATACCATGTTGAAGATGGAGGTAGTGCTATGAGTGCAACACCAGTCTCTTCGGGGCCTATGCATGAGATCGAACGTTTTCAACAGTTGACAAGCCCAAACTTCTTAGTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

198

Amino Acids

22.01

Weight (kDa)

5.07

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17700 AT4G35780
fragaria_vesca FvH4_1g10940 FvH4_1g10940 FvH4_1g10940
malus_domestica MD02G1122500.v1.1 MD15G1236700.v1.1
prunus_persica Prupe.7G176000_v2.0.a1
pyrus_communis pycom02g09550 pycom15g21040
rosa_chinensis RchiOBHm_Chr2g0098201
rosa_laevigata RLG00000016776
rosa_multiflora Rmu_sc0009178.1_g000003
rosa_roxburghii Rroxscaffold_2G00144160
rosa_rugosa Rorug02G0071100 Rorug02G0071200.1
rosa_samantha Rh2AG118300 Rh2BG121300 Rh2DG123000
rosa_wichuraiana Rw2G009270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 295, 301
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 30, 41
AclI AACGTT 1 cut(s) 553
AcsI RAATTY 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 434
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 5 cut(s) 181, 296, 470, 491, 560
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 3 cut(s) 27, 85, 166
AluI AGCT 3 cut(s) 27, 85, 166
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 57, 529
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 2 cut(s) 138, 533
ApeKI GCWGC 4 cut(s) 27, 33, 61, 256
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 2 cut(s) 234, 555
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 349, 533
AvaII GGWCC 1 cut(s) 349
BbsI GAAGAC 2 cut(s) 276, 316
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 4 cut(s) 14, 45, 73, 243
BccI CCATC 2 cut(s) 323, 488
BciT130I CCWGG 1 cut(s) 150
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 57, 529
BfaI CTAG 1 cut(s) 239
BfuAI ACCTGC 2 cut(s) 295, 301
BisI GCNGC 5 cut(s) 28, 31, 34, 62, 257
BlsI GCNGC 5 cut(s) 29, 32, 35, 63, 258
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 349
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 349, 533
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 2 cut(s) 276, 316
BpmI CTGGAG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 465, 521
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 465, 521
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 4 cut(s) 14, 45, 73, 243
BsgI GTGCAG 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 140, 535
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 2 cut(s) 57, 529
BsmBI CGTCTC 1 cut(s) 57
BsnI GGCC 2 cut(s) 140, 535
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 160, 546
BspACI CCGC 2 cut(s) 30, 41
BspANI GGCC 2 cut(s) 140, 535
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 534
BspMI ACCTGC 2 cut(s) 295, 301
BsrBI CCGCTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 2 cut(s) 465, 521
BssAI RCCGGY 1 cut(s) 75
BssMI GATC 2 cut(s) 160, 546
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 395, 564
Bst6I CTCTTC 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 54, 583
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 2 cut(s) 163, 549
BstMAI GTCTC 2 cut(s) 57, 529
BstMBI GATC 2 cut(s) 160, 546
BstMWI GCNNNNNNNGC 4 cut(s) 33, 200, 470, 512
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 4 cut(s) 14, 45, 73, 243
BstV2I GAAGAC 2 cut(s) 276, 316
BsuRI GGCC 2 cut(s) 140, 535
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 458
BveI ACCTGC 2 cut(s) 295, 301
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 349, 533
CseI GACGC 1 cut(s) 464
CviAII CATG 3 cut(s) 419, 485, 542
DdeI CTNAG 2 cut(s) 54, 583
DpnI GATC 2 cut(s) 162, 548
DpnII GATC 2 cut(s) 160, 546
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 543
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 3 cut(s) 422, 488, 545
FaiI YATR 7 cut(s) 169, 246, 420, 486, 509, 539, 543
FatI CATG 3 cut(s) 418, 484, 541
FbaI TGATCA 1 cut(s) 160
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 5 cut(s) 28, 31, 34, 62, 257
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 5 cut(s) 28, 31, 34, 62, 257
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 60
GluI GCNGC 5 cut(s) 28, 31, 34, 62, 257
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 2 cut(s) 140, 535
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 464
HhaI GCGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 422, 488, 545
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 2 cut(s) 343, 567
HindII GTYRAC 2 cut(s) 343, 567
HinfI GANTC 5 cut(s) 114, 122, 344, 359, 415
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 94, 343, 567
Hpy188I TCNGA 2 cut(s) 110, 358
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 3 cut(s) 94, 343, 567
Hpy99I CGWCG 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 395, 564
HpyCH4IV ACGT 2 cut(s) 18, 553
HpyCH4V TGCA 7 cut(s) 259, 266, 310, 380, 422, 515, 541
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 200, 470, 512
HpyF3I CTNAG 2 cut(s) 54, 583
HpySE526I ACGT 2 cut(s) 18, 553
Hsp92II CATG 3 cut(s) 422, 488, 545
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 160, 546
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 4 cut(s) 14, 45, 73, 243
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 18, 553
MaeIII GTNAC 2 cut(s) 197, 395
MalI GATC 2 cut(s) 162, 548
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 160, 546
MboII GAAGA 8 cut(s) 137, 242, 281, 316, 354, 386, 503, 519
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 3 cut(s) 127, 260, 334
MluI ACGCGT 1 cut(s) 201
MlyI GAGTC 2 cut(s) 131, 338
MmeI TCCRAC 2 cut(s) 133, 186
Mph1103I ATGCAT 1 cut(s) 543
MroXI GAANNNNTTC 2 cut(s) 234, 555
MseI TTAA 1 cut(s) 592
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 33, 200, 470, 512
NdeII GATC 2 cut(s) 160, 546
NlaIII CATG 3 cut(s) 422, 488, 545
NlaIV GGNNCC 1 cut(s) 534
NsiI ATGCAT 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdmI GAANNNNTTC 2 cut(s) 234, 555
PfeI GAWTC 3 cut(s) 114, 359, 415
PflFI GACNNNGTC 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 5 cut(s) 29, 32, 35, 63, 258
PleI GAGTC 2 cut(s) 130, 338
PpsI GAGTC 2 cut(s) 130, 338
Psp1406I AACGTT 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 2 cut(s) 349, 533
PstNI CAGNNNCTG 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 592
SatI GCNGC 5 cut(s) 28, 31, 34, 62, 257
Sau3AI GATC 2 cut(s) 160, 546
Sau96I GGNCC 2 cut(s) 349, 533
SchI GAGTC 2 cut(s) 131, 338
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 1 cut(s) 349
Sse9I AATT 3 cut(s) 127, 260, 334
SsiI CCGC 2 cut(s) 30, 41
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 2 cut(s) 395, 564
TaiI ACGT 2 cut(s) 21, 556
TaqI TCGA 4 cut(s) 9, 327, 365, 549
TaqII GACCGA 1 cut(s) 337
TasI AATT 3 cut(s) 127, 260, 334
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 3 cut(s) 114, 359, 415
Tru1I TTAA 1 cut(s) 592
Tru9I TTAA 1 cut(s) 592
TscAI CASTG 1 cut(s) 465
TseI GCWGC 4 cut(s) 27, 33, 61, 256
TspDTI ATGAA 4 cut(s) 164, 383, 407, 429
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 465
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 93
XmnI GAANNNNTTC 2 cut(s) 234, 555
XspI CTAG 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.