Rmu_sc0009178.1_g000003

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009178.1
OG0010681
Physical Location & Seq
Forward (+)
8194 .. 12965
4772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009178.1_g000003.1.cds

Sequence Viewer

Length: 1458 bp
atggcgatcgacgaggacttggagagctgcggcagcagagccgctgccgcgttctcgtcgtctcaggcgcagcctcgccaccagcggcagaagctcgaggtctacaacgaggtgctgaggagaattcaggagtacaattatgaggaggccagtcttcctggatttgatgatcagctttggctccatttcaatcgattacctgctcgatacgcgttggatgtgaatgtggagagggcagaggatgtgcttacacataagagattgctgcaacttgcagaggaccctgcttaccaacccgcttttgaagttcgcactgtgcaggtttatcctgtgtacaatgggattcctggtgattcggtccattcagattcttcaatgaaagaagatgcacaaagttcttttaattataacagacaagggattcatccaccacctacctttggttcgtctcctaatctcgaggcactttcacttctagccaatagatcccatgttgatgatggagacagtgcaatgagcgtaacaccctatgtttctaggcctatgcatgagatcactttttcaacagttgacaagcctaaacttcttagtcagttaacttcattacttgctgatattggactgaatattcaagaagctcatgccttttccactgttgatggattttctctggatgttttcgtagttgatggttggcacttagaggaaactgaagaacttaaaagggtgttggagaaggaaatttcaaaatttgagaagtcaaagcagtatccagttgctgcaattagcgaggataaccaaataaaaattgagtcttcccgcgatgccctacaaataccaactgatggtatagatgtatgggagattgacacaaggcagctgaaatttgagaacaaagttggatctggatcattcggtgatctgtacagaggcacatattgtagtcaggaagttgccatcaaagttttaaaacctgagcgtgtcaatgcagagatgctgagagatttttcacaggaagtttatattctgaggaaaattcggcacaagaatgttgtgcaatttattggtgcatgtacacaacctccaaacatatgtattgtgaccggtatgtccttagtcattgaacacaaaccgtatgatcacaaggcagatgttttcagttttggtatagtgttgtgggagcttctaacaggagaactcccctactcatccttgaccccattacaagcagcagtgggtgtggtgcaaaaggcattacgacctacaatcccaaagaatactcacccaaagtttgcagaagtgcttgagagatgctggcagcaagacccaactcaaagacctgacttctctgagattgtggaaattcttcaacatttggccaaggaggtgggaaatgagggtgaagaccgacacaaggataagtcatttttctcagcgctgagatggggccatcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

485

Amino Acids

54.96

Weight (kDa)

5.33

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17700 AT4G35780
fragaria_vesca FvH4_1g10940 FvH4_1g10940 FvH4_1g10940
malus_domestica MD02G1122500.v1.1 MD15G1236700.v1.1
prunus_persica Prupe.7G176000_v2.0.a1
pyrus_communis pycom02g09550 pycom15g21040
rosa_chinensis RchiOBHm_Chr2g0098201
rosa_laevigata RLG00000016776
rosa_multiflora Rmu_sc0009178.1_g000003
rosa_roxburghii Rroxscaffold_2G00144160
rosa_rugosa Rorug02G0071100 Rorug02G0071200.1
rosa_samantha Rh2AG118300 Rh2BG121300 Rh2DG123000
rosa_wichuraiana Rw2G009270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AasI GACNNNNNNGTC 1 cut(s) 1108
Acc36I ACCTGC 2 cut(s) 208, 310
AccB7I CCANNNNNTGG 1 cut(s) 845
AccI GTMKAC 1 cut(s) 102
AccII CGCG 3 cut(s) 50, 212, 822
AciI CCGC 6 cut(s) 30, 42, 48, 85, 297, 820
AclWI GGATC 3 cut(s) 480, 910, 916
AcoI YGGCCR 1 cut(s) 1377
AcsI RAATTY 6 cut(s) 123, 741, 749, 884, 1035, 1362
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 4 cut(s) 134, 335, 926, 1075
AfeI AGCGCT 1 cut(s) 1437
AfiI CCNNNNNNNGG 3 cut(s) 440, 845, 1414
AflIII ACRYGT 1 cut(s) 210
AgeI ACCGGT 1 cut(s) 1103
AgsI TTSAA 8 cut(s) 190, 305, 375, 564, 632, 747, 1124, 1370
AjnI CCWGG 2 cut(s) 157, 346
AluBI AGCT 6 cut(s) 27, 94, 175, 638, 880, 1183
AluI AGCT 6 cut(s) 27, 94, 175, 638, 880, 1183
Alw26I GTCTC 3 cut(s) 66, 453, 498
AlwI GGATC 3 cut(s) 480, 910, 916
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 2 cut(s) 95, 458
Aor51HI AGCGCT 1 cut(s) 1437
AoxI GGCC 4 cut(s) 147, 539, 1377, 1447
ApeKI GCWGC 9 cut(s) 27, 33, 44, 70, 265, 779, 877, 1229, 1318
ApoI RAATTY 6 cut(s) 123, 741, 749, 884, 1035, 1362
AsiGI ACCGGT 1 cut(s) 1103
Asp700I GAANNNNTTC 1 cut(s) 1365
AspLEI GCGC 2 cut(s) 70, 1438
AspS9I GGNCC 3 cut(s) 280, 358, 1447
AsuHPI GGTGA 4 cut(s) 362, 929, 1274, 1412
AvaI CYCGRG 2 cut(s) 95, 458
AvaII GGWCC 2 cut(s) 280, 358
BalI TGGCCA 1 cut(s) 1379
BbsI GAAGAC 3 cut(s) 146, 807, 1410
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 9 cut(s) 14, 31, 45, 82, 252, 766, 889, 1241, 1330
BccI CCATC 6 cut(s) 494, 653, 683, 839, 965, 1437
BciT130I CCWGG 2 cut(s) 159, 348
BciVI GTATCC 1 cut(s) 780
BclI TGATCA 2 cut(s) 169, 1138
BcoDI GTCTC 3 cut(s) 66, 453, 498
BfaI CTAG 2 cut(s) 476, 537
BfoI RGCGCY 1 cut(s) 1439
BfuAI ACCTGC 2 cut(s) 208, 310
BfuI GTATCC 1 cut(s) 780
Bme1390I CCNGG 2 cut(s) 159, 348
Bme18I GGWCC 2 cut(s) 280, 358
BmeT110I CYCGRG 2 cut(s) 95, 458
BmgT120I GGNCC 3 cut(s) 280, 358, 1447
BmiI GGNNCC 3 cut(s) 182, 282, 1448
BmrFI CCNGG 2 cut(s) 159, 348
BmsI GCATC 4 cut(s) 376, 814, 984, 1301
BpiI GAAGAC 3 cut(s) 146, 807, 1410
Bpu10I CCTNAGC 2 cut(s) 116, 975
BpuEI CTTGAG 1 cut(s) 1325
Bsa29I ATCGAT 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 907
BsaJI CCNNGG 1 cut(s) 1380
BsaWI WCCGGW 1 cut(s) 1103
BsaXI ACNNNNNCTCC 2 cut(s) 1066, 1096
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 845, 1414
Bse118I RCCGGY 1 cut(s) 1103
Bse1I ACTGG 2 cut(s) 150, 773
Bse3DI GCAATG 1 cut(s) 519
Bse8I GATNNNNATC 1 cut(s) 907
BseBI CCWGG 2 cut(s) 159, 348
BseCI ATCGAT 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 1380
BseGI GGATG 5 cut(s) 223, 247, 424, 679, 1208
BseJI GATNNNNATC 1 cut(s) 907
BseLI CCNNNNNNNGG 3 cut(s) 440, 845, 1414
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 8 cut(s) 77, 107, 966, 989, 1019, 1341, 1430, 1446
BseNI ACTGG 2 cut(s) 150, 773
BseRI GAGGAG 2 cut(s) 133, 158
BseXI GCAGC 9 cut(s) 14, 31, 45, 82, 252, 766, 889, 1241, 1330
BsgI GTGCAG 1 cut(s) 338
Bsh1236I CGCG 3 cut(s) 50, 212, 822
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 149, 541, 1379, 1449
BshTI ACCGGT 1 cut(s) 1103
BshVI ATCGAT 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 2 cut(s) 95, 458
BsiSI CCGG 1 cut(s) 1104
BslI CCNNNNNNNGG 3 cut(s) 440, 845, 1414
BsmAI GTCTC 3 cut(s) 66, 453, 498
BsmBI CGTCTC 2 cut(s) 66, 453
BsnI GGCC 4 cut(s) 149, 541, 1379, 1449
BsoBI CYCGRG 2 cut(s) 95, 458
Bsp1407I TGTACA 3 cut(s) 333, 924, 1073
Bsp143I GATC 8 cut(s) 6, 169, 485, 552, 902, 908, 919, 1138
BspACI CCGC 6 cut(s) 30, 42, 48, 85, 297, 820
BspANI GGCC 4 cut(s) 149, 541, 1379, 1449
BspCNI CTCAG 8 cut(s) 76, 108, 967, 990, 1020, 1342, 1431, 1445
BspDI ATCGAT 1 cut(s) 193
BspFNI CGCG 3 cut(s) 50, 212, 822
BspLI GGNNCC 3 cut(s) 182, 282, 1448
BspMI ACCTGC 2 cut(s) 208, 310
BspPI GGATC 3 cut(s) 480, 910, 916
BsrDI GCAATG 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 1103
BsrGI TGTACA 3 cut(s) 333, 924, 1073
BsrI ACTGG 2 cut(s) 150, 773
BssAI RCCGGY 1 cut(s) 1103
BssECI CCNNGG 1 cut(s) 1380
BssMI GATC 8 cut(s) 6, 169, 485, 552, 902, 908, 919, 1138
BssT1I CCWWGG 1 cut(s) 1380
Bst2UI CCWGG 2 cut(s) 159, 348
Bst4CI ACNGT 5 cut(s) 316, 509, 568, 655, 1134
BstAUI TGTACA 3 cut(s) 333, 924, 1073
BstC8I GCNNGC 1 cut(s) 1316
BstF5I GGATG 5 cut(s) 223, 247, 424, 679, 1208
BstFNI CGCG 3 cut(s) 50, 212, 822
BstH2I RGCGCY 1 cut(s) 1439
BstHHI GCGC 2 cut(s) 70, 1438
BstKTI GATC 8 cut(s) 9, 172, 488, 555, 905, 911, 922, 1141
BstMAI GTCTC 3 cut(s) 66, 453, 498
BstMBI GATC 8 cut(s) 6, 169, 485, 552, 902, 908, 919, 1138
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 33, 47, 91, 209
BstNI CCWGG 2 cut(s) 159, 348
BstNSI RCATGY 1 cut(s) 1074
BstSCI CCNGG 2 cut(s) 157, 346
BstUI CGCG 3 cut(s) 50, 212, 822
BstV1I GCAGC 9 cut(s) 14, 31, 45, 82, 252, 766, 889, 1241, 1330
BstV2I GAAGAC 3 cut(s) 146, 807, 1410
BstX2I RGATCY 2 cut(s) 485, 902
BstXI CCANNNNNNTGG 1 cut(s) 1387
BstYI RGATCY 2 cut(s) 485, 902
Bsu15I ATCGAT 1 cut(s) 193
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 4 cut(s) 149, 541, 1379, 1449
BsuTUI ATCGAT 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 5 cut(s) 223, 247, 424, 679, 1208
BtsI GCAGTG 1 cut(s) 1239
BtsIMutI CAGTG 4 cut(s) 312, 514, 651, 1239
BveI ACCTGC 2 cut(s) 208, 310
Cac8I GCNNGC 1 cut(s) 1316
CaiI CAGNNNCTG 1 cut(s) 779
CfoI GCGC 2 cut(s) 70, 1438
Cfr10I RCCGGY 1 cut(s) 1103
Cfr13I GGNCC 3 cut(s) 280, 358, 1447
ClaI ATCGAT 1 cut(s) 193
Csp6I GTAC 4 cut(s) 133, 334, 925, 1074
CspAI ACCGGT 1 cut(s) 1103
CviAII CATG 4 cut(s) 491, 548, 641, 1071
CviQI GTAC 4 cut(s) 133, 334, 925, 1074
DpnI GATC 8 cut(s) 8, 171, 487, 554, 904, 910, 921, 1140
DpnII GATC 8 cut(s) 6, 169, 485, 552, 902, 908, 919, 1138
DraI TTTAAA 1 cut(s) 969
DrdI GACNNNNNNGTC 1 cut(s) 1108
DseDI GACNNNNNNGTC 1 cut(s) 1108
EaeI YGGCCR 1 cut(s) 1377
Eco130I CCWWGG 1 cut(s) 1380
Eco147I AGGCCT 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 280, 358
Eco47III AGCGCT 1 cut(s) 1437
Eco57I CTGAAG 1 cut(s) 732
Eco88I CYCGRG 2 cut(s) 95, 458
EcoO109I RGGNCCY 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 2 cut(s) 157, 346
EcoT14I CCWWGG 1 cut(s) 1380
EcoT22I ATGCAT 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 1380
Esp3I CGTCTC 2 cut(s) 66, 453
FaeI CATG 4 cut(s) 494, 551, 644, 1074
FatI CATG 4 cut(s) 490, 547, 640, 1070
FauI CCCGC 2 cut(s) 304, 827
FauNDI CATATG 1 cut(s) 1091
FbaI TGATCA 2 cut(s) 169, 1138
FblI GTMKAC 1 cut(s) 102
FokI GGATG 5 cut(s) 230, 254, 411, 686, 1195
FspBI CTAG 2 cut(s) 476, 537
GlaI GCGC 2 cut(s) 69, 1437
HaeII RGCGCY 1 cut(s) 1439
HaeIII GGCC 4 cut(s) 149, 541, 1379, 1449
HapII CCGG 1 cut(s) 1104
HhaI GCGC 2 cut(s) 70, 1438
Hin1II CATG 4 cut(s) 494, 551, 644, 1074
Hin6I GCGC 2 cut(s) 68, 1436
HinP1I GCGC 2 cut(s) 68, 1436
HincII GTYRAC 2 cut(s) 571, 597
HindII GTYRAC 2 cut(s) 571, 597
HinfI GANTC 5 cut(s) 343, 353, 368, 421, 812
HpaI GTTAAC 1 cut(s) 597
HpaII CCGG 1 cut(s) 1104
HphI GGTGA 4 cut(s) 362, 929, 1274, 1412
Hpy166II GTNNAC 5 cut(s) 103, 334, 571, 597, 1076
Hpy188I TCNGA 3 cut(s) 367, 1029, 1351
Hpy188III TCNNGA 6 cut(s) 128, 458, 632, 671, 906, 947
Hpy8I GTNNAC 5 cut(s) 103, 334, 571, 597, 1076
Hpy99I CGWCG 2 cut(s) 14, 61
HpyAV CCTTC 1 cut(s) 730
HpyCH4III ACNGT 5 cut(s) 316, 509, 568, 655, 1134
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 47, 91, 209
Hsp92II CATG 4 cut(s) 494, 551, 644, 1074
HspAI GCGC 2 cut(s) 68, 1436
Ksp22I TGATCA 2 cut(s) 169, 1138
KspAI GTTAAC 1 cut(s) 597
Kzo9I GATC 8 cut(s) 6, 169, 485, 552, 902, 908, 919, 1138
LmnI GCTCC 2 cut(s) 186, 1180
Lsp1109I GCAGC 9 cut(s) 14, 31, 45, 82, 252, 766, 889, 1241, 1330
LweI GCATC 4 cut(s) 376, 814, 984, 1301
MaeI CTAG 2 cut(s) 476, 537
MaeIII GTNAC 2 cut(s) 520, 1099
MalI GATC 8 cut(s) 8, 171, 487, 554, 904, 910, 921, 1140
MboI GATC 8 cut(s) 6, 169, 485, 552, 902, 908, 919, 1138
MboII GAAGA 7 cut(s) 146, 363, 395, 725, 807, 1358, 1415
MflI RGATCY 2 cut(s) 485, 902
MlsI TGGCCA 1 cut(s) 1379
MluI ACGCGT 1 cut(s) 210
MluNI TGGCCA 1 cut(s) 1379
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 3 cut(s) 195, 711, 880
Mox20I TGGCCA 1 cut(s) 1379
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 1365
MscI TGGCCA 1 cut(s) 1379
MseI TTAA 4 cut(s) 402, 596, 720, 968
MslI CAYNNNNRTG 2 cut(s) 495, 1047
Msp20I TGGCCA 1 cut(s) 1379
MspA1I CMGCKG 3 cut(s) 44, 85, 880
MspI CCGG 1 cut(s) 1104
MspR9I CCNGG 2 cut(s) 159, 348
MvaI CCWGG 2 cut(s) 159, 348
MvnI CGCG 3 cut(s) 50, 212, 822
MwoI GCNNNNNNNGC 4 cut(s) 33, 47, 91, 209
NdeI CATATG 1 cut(s) 1091
NdeII GATC 8 cut(s) 6, 169, 485, 552, 902, 908, 919, 1138
NlaIII CATG 4 cut(s) 494, 551, 644, 1074
NlaIV GGNNCC 3 cut(s) 182, 282, 1448
NmuCI GTSAC 1 cut(s) 1099
NsiI ATGCAT 1 cut(s) 549
NspI RCATGY 1 cut(s) 1074
PaeR7I CTCGAG 2 cut(s) 95, 458
PceI AGGCCT 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 1365
PfeI GAWTC 4 cut(s) 343, 353, 368, 421
PflMI CCANNNNNTGG 1 cut(s) 845
PfoI TCCNGGA 1 cut(s) 157
PinAI ACCGGT 1 cut(s) 1103
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
PpuMI RGGWCCY 1 cut(s) 280
PsiI TTATAA 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 157, 346
PspGI CCWGG 2 cut(s) 157, 346
PspN4I GGNNCC 3 cut(s) 182, 282, 1448
PspPI GGNCC 3 cut(s) 280, 358, 1447
PspPPI RGGWCCY 1 cut(s) 280
PspXI VCTCGAGB 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 2 cut(s) 485, 902
PvuI CGATCG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 4 cut(s) 134, 335, 926, 1075
RsaNI GTAC 4 cut(s) 133, 334, 925, 1074
RseI CAYNNNNRTG 2 cut(s) 495, 1047
SaqAI TTAA 4 cut(s) 402, 596, 720, 968
Sau3AI GATC 8 cut(s) 6, 169, 485, 552, 902, 908, 919, 1138
Sau96I GGNCC 3 cut(s) 280, 358, 1447
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 2 cut(s) 159, 348
SfaNI GCATC 4 cut(s) 376, 814, 984, 1301
Sfr274I CTCGAG 2 cut(s) 95, 458
SinI GGWCC 2 cut(s) 280, 358
SlaI CTCGAG 2 cut(s) 95, 458
SmiMI CAYNNNNRTG 2 cut(s) 495, 1047
SmlI CTYRAG 3 cut(s) 95, 458, 1304
SmoI CTYRAG 3 cut(s) 95, 458, 1304
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 6 cut(s) 30, 42, 48, 85, 297, 820
SspI AATATT 1 cut(s) 628
SspMI CTAG 2 cut(s) 476, 537
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 2 cut(s) 157, 346
StyI CCWWGG 1 cut(s) 1380
TaaI ACNGT 5 cut(s) 316, 509, 568, 655, 1134
TaqI TCGA 5 cut(s) 9, 96, 193, 205, 459
TaqII GACCGA 2 cut(s) 346, 1422
TatI WGTACW 4 cut(s) 132, 333, 924, 1073
TauI GCSGC 4 cut(s) 33, 44, 50, 88
TfiI GAWTC 4 cut(s) 343, 353, 368, 421
Tru1I TTAA 4 cut(s) 402, 596, 720, 968
Tru9I TTAA 4 cut(s) 402, 596, 720, 968
TscAI CASTG 4 cut(s) 319, 514, 658, 1239
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 9 cut(s) 27, 33, 44, 70, 265, 779, 877, 1229, 1318
Tsp45I GTSAC 1 cut(s) 1099
TspDTI ATGAA 3 cut(s) 392, 413, 591
TspRI CASTG 4 cut(s) 319, 514, 658, 1239
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 2 cut(s) 280, 358
XapI RAATTY 6 cut(s) 123, 741, 749, 884, 1035, 1362
XceI RCATGY 1 cut(s) 1074
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XhoI CTCGAG 2 cut(s) 95, 458
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 1365
XspI CTAG 2 cut(s) 476, 537
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.