Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014635

Physical Location & Seq

Genomic Coordinates Forward (+)

6701577 .. 6704195

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAAAATGGAAATGCGACGCCAGTTGGCGGTGGCTTCACCACCATCTCGAAGTTTTGTTCATGCTCACATACACATGTTGGGAGGCTTTGTTGTTGGCATTCTGTCAGTTTTGATAGTGGCCTTGTTATACTACTTGATCAAGAAGAAGCTCCTACCAGCTCTCAGGCAAAGACAATTACTACATGAGCTTGGGCAGAAAGGAAATTTGAAAGAAGAGAAAATAACGTTGAGGCGCTTCCAGTTGGATGAACTAGTGAAGGCTACTAATAATTTCAGCAGTGAGTGCTTGTTGGGTTCTGGTGGTTTTGCAAATGTCTACAAGGGGACCTTTGATGATGCAGGAACCCTAGCCATTAAGCGAGCCCACGCCGATTCATTTCAGAGTGTCGAAGAATTTAGAAATGGGGCAAAAGGAGGAAAAGTGTTGATCTATGAATATGTACCAAATGGTTCTCTCCTTGATTACTTTATGGGAAGAAAATGGAGGAGCTTAACTTGGAGGCAAAGAGTCAACATAGCCATTGGAGCAGCAAAAGGCATTGCTCATTTGCATGAAGGAGTAAACCCGAGCATAATCCACCGCGATATAAAGCCAAGTAACATCTTGATAGGAGATGGATTTGAAGCCAAGGTTTCAGATTTTGGACTTGTTAGGTCAGGGCCTACTGGGGATCAATCACATGTCAGCAGCCAAATCAAGGGAACTCCAGGCTACCTAGACCCTGCATATTGTTCAAGTTTCCATTTGACGCCGTTTAGCGATGTCTATAGCTTTGGTGTGATACTTCTGCAGCTTATTTCTTCCCGGCCTGCGGTTGATTCGACAGGCCACCGCCCTAAGCAGCATATAATTGACTGGGCAAGACCAAGCTTAGAGCAAGGCCGTGTTGAGGAGATTTTAGATGCAAATCTTTTAACAGAGCCATGTAACACAGAGATGATGCTAAAGATGGGGAAACTTGGCCTAAGATGTGTTGTGAAAGTGCCCAAAAACCGCCCTACCATGTCGCAAGTGTGGAAAGAACTCGAAGAGGCCCTATACTTTGCAGACAACTTCATTAGCATACAGCCTTCATGGGGATCTCGAAGATCAACTGGCACGTCCCACCTACCATCAGAGCTAGGGCATAGAACGATCAATGGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

384

Amino Acids

42.63

Weight (kDa)

9.5

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11130
malus_domestica	MD02G1123900.v1.1 MD15G1237900.v1.1
prunus_persica	Prupe.7G174600_v2.0.a1 Prupe.7G174600_v2.0.a1 Prupe.7G174600_v2.0.a1
pyrus_communis	pycom02g09680
rosa_chinensis	RchiOBHm_Chr2g0098411
rosa_laevigata	RLG00000016797
rosa_multiflora	Rmu_ssc0000196.1_g000021
rosa_roxburghii	Rroxscaffold_2G00143990
rosa_rugosa	Rorug02G0073000
rosa_samantha	Rh2AG120300 Rh2BG123100 Rh2CG124700 Rh2DG124800
rosa_wichuraiana	Rw2G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	585
AciI	CCGC	5 cut(s)	29, 583, 815, 835, 997
AclI	AACGTT	1 cut(s)	227
AclWI	GGATC	2 cut(s)	681, 1090
AcsI	RAATTY	2 cut(s)	205, 395
AcyI	GRCGYC	2 cut(s)	19, 752
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	5 cut(s)	28, 700, 814, 892, 1079
AflIII	ACRYGT	2 cut(s)	75, 682
AgsI	TTSAA	3 cut(s)	211, 626, 738
AhlI	ACTAGT	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	1104
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	8 cut(s)	151, 161, 190, 492, 774, 796, 873, 1123
AluI	AGCT	8 cut(s)	151, 161, 190, 492, 774, 796, 873, 1123
AlwI	GGATC	2 cut(s)	681, 1090
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	7 cut(s)	120, 662, 809, 829, 883, 964, 1035
ApeKI	GCWGC	4 cut(s)	530, 690, 793, 844
ApoI	RAATTY	2 cut(s)	205, 395
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	3 cut(s)	327, 662, 1036
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	990
BanII	GRGCYC	1 cut(s)	367
BbvI	GCAGC	4 cut(s)	542, 702, 805, 856
BccI	CCATC	4 cut(s)	52, 611, 946, 1123
BceAI	ACGGC	2 cut(s)	739, 870
BciT130I	CCWGG	1 cut(s)	711
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	808
BcuI	ACTAGT	1 cut(s)	253
BfaI	CTAG	4 cut(s)	254, 350, 719, 1124
BfmI	CTRYAG	2 cut(s)	769, 791
BfoI	RGCGCY	1 cut(s)	238
BisI	GCNGC	4 cut(s)	531, 691, 794, 845
BlsI	GCNGC	4 cut(s)	532, 692, 795, 846
Bme1390I	CCNGG	2 cut(s)	711, 808
Bme18I	GGWCC	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	1104
BmgT120I	GGNCC	3 cut(s)	327, 662, 1036
BmiI	GGNNCC	2 cut(s)	328, 346
BmrFI	CCNGG	2 cut(s)	711, 808
BmrI	ACTGGG	2 cut(s)	678, 868
BmsI	GCATC	3 cut(s)	328, 895, 933
BmuI	ACTGGG	2 cut(s)	678, 868
BpmI	CTGGAG	1 cut(s)	693
Bpu10I	CCTNAGC	1 cut(s)	840
BpuMI	CCSGG	1 cut(s)	808
BsaBI	GATNNNNATC	1 cut(s)	909
BsaHI	GRCGYC	2 cut(s)	19, 752
BsaJI	CCNNGG	1 cut(s)	630
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 408, 438
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 700, 814, 892, 1079
Bse1I	ACTGG	5 cut(s)	22, 241, 673, 863, 1102
Bse3DI	GCAATG	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	5 cut(s)	28, 700, 814, 892, 1079
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	5 cut(s)	22, 241, 673, 863, 1102
BseRI	GAGGAG	2 cut(s)	502, 908
BseSI	GKGCMC	1 cut(s)	990
BseXI	GCAGC	4 cut(s)	542, 702, 805, 856
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	7 cut(s)	122, 664, 811, 831, 885, 966, 1037
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	2 cut(s)	340, 1090
BslI	CCNNNNNNNGG	5 cut(s)	28, 700, 814, 892, 1079
BsmFI	GGGAC	2 cut(s)	340, 1090
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	7 cut(s)	122, 664, 811, 831, 885, 966, 1037
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	367, 990
Bsp143I	GATC	6 cut(s)	138, 429, 673, 1082, 1091, 1137
BspACI	CCGC	5 cut(s)	29, 583, 815, 835, 997
BspANI	GGCC	7 cut(s)	122, 664, 811, 831, 885, 966, 1037
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	328, 346
BspMAI	CTGCAG	1 cut(s)	795
BspPI	GGATC	2 cut(s)	681, 1090
BsrDI	GCAATG	1 cut(s)	540
BsrI	ACTGG	5 cut(s)	22, 241, 673, 863, 1102
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	6 cut(s)	138, 429, 673, 1082, 1091, 1137
BssNI	GRCGYC	2 cut(s)	19, 752
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	711
Bst6I	CTCTTC	2 cut(s)	210, 1026
BstACI	GRCGYC	2 cut(s)	19, 752
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	363, 813
BstDEI	CTNAG	4 cut(s)	164, 840, 874, 968
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	6 cut(s)	141, 432, 676, 1085, 1094, 1140
BstMBI	GATC	6 cut(s)	138, 429, 673, 1082, 1091, 1137
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 527
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	2 cut(s)	79, 686
BstSCI	CCNGG	2 cut(s)	709, 806
BstSFI	CTRYAG	2 cut(s)	769, 791
BstSLI	GKGCMC	1 cut(s)	990
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	4 cut(s)	542, 702, 805, 856
BstX2I	RGATCY	1 cut(s)	1082
BstYI	RGATCY	1 cut(s)	1082
BsuRI	GGCC	7 cut(s)	122, 664, 811, 831, 885, 966, 1037
BtgZI	GCGATG	1 cut(s)	777
BtrI	CACGTC	1 cut(s)	1104
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	363, 813
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	327, 662, 1036
CseI	GACGC	2 cut(s)	27, 760
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	8 cut(s)	62, 76, 185, 554, 683, 927, 1006, 1077
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	4 cut(s)	164, 840, 874, 968
DpnI	GATC	6 cut(s)	140, 431, 675, 1084, 1093, 1139
DpnII	GATC	6 cut(s)	138, 429, 673, 1082, 1091, 1137
Eam1104I	CTCTTC	2 cut(s)	210, 1026
EarI	CTCTTC	2 cut(s)	210, 1026
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	568
EcoO109I	RGGNCCY	3 cut(s)	327, 662, 1036
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	8 cut(s)	65, 79, 188, 557, 686, 930, 1009, 1080
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	340, 1090
FatI	CATG	8 cut(s)	61, 75, 184, 553, 682, 926, 1005, 1076
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	531, 691, 794, 845
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	4 cut(s)	531, 691, 794, 845
FspBI	CTAG	4 cut(s)	254, 350, 719, 1124
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	531, 691, 794, 845
GsuI	CTGGAG	1 cut(s)	693
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	7 cut(s)	122, 664, 811, 831, 885, 966, 1037
HapII	CCGG	1 cut(s)	808
HgaI	GACGC	2 cut(s)	27, 760
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	2 cut(s)	19, 752
Hin1II	CATG	8 cut(s)	65, 79, 188, 557, 686, 930, 1009, 1080
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	871
HinfI	GANTC	3 cut(s)	374, 510, 821
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	319, 514, 565
Hpy188I	TCNGA	3 cut(s)	384, 640, 1120
Hpy188III	TCNNGA	4 cut(s)	48, 142, 607, 1086
Hpy8I	GTNNAC	3 cut(s)	319, 514, 565
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	253, 551, 1083
HpyCH4IV	ACGT	2 cut(s)	227, 1103
HpyCH4V	TGCA	7 cut(s)	311, 341, 553, 728, 793, 908, 1049
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 527
HpyF3I	CTNAG	4 cut(s)	164, 840, 874, 968
HpySE526I	ACGT	2 cut(s)	227, 1103
Hsp92I	GRCGYC	2 cut(s)	19, 752
Hsp92II	CATG	8 cut(s)	65, 79, 188, 557, 686, 930, 1009, 1080
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	138, 429, 673, 1082, 1091, 1137
LmnI	GCTCC	3 cut(s)	156, 489, 527
Lsp1109I	GCAGC	4 cut(s)	542, 702, 805, 856
LweI	GCATC	3 cut(s)	328, 895, 933
MaeI	CTAG	4 cut(s)	254, 350, 719, 1124
MaeII	ACGT	2 cut(s)	227, 1103
MaeIII	GTNAC	2 cut(s)	599, 929
MalI	GATC	6 cut(s)	140, 431, 675, 1084, 1093, 1139
MboI	GATC	6 cut(s)	138, 429, 673, 1082, 1091, 1137
MboII	GAAGA	7 cut(s)	157, 227, 404, 489, 795, 1043, 1101
MflI	RGATCY	1 cut(s)	1082
MhlI	GDGCHC	2 cut(s)	367, 990
MluCI	AATT	5 cut(s)	176, 205, 271, 395, 852
MlyI	GAGTC	1 cut(s)	519
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	7 cut(s)	77, 225, 410, 480, 495, 886, 1027
MseI	TTAA	3 cut(s)	357, 494, 917
MslI	CAYNNNNRTG	3 cut(s)	74, 552, 938
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	2 cut(s)	711, 808
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	2 cut(s)	285, 527
NciI	CCSGG	1 cut(s)	808
NdeII	GATC	6 cut(s)	138, 429, 673, 1082, 1091, 1137
NlaIII	CATG	8 cut(s)	65, 79, 188, 557, 686, 930, 1009, 1080
NlaIV	GGNNCC	2 cut(s)	328, 346
NspI	RCATGY	2 cut(s)	79, 686
PciI	ACATGT	2 cut(s)	75, 682
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	374, 821
PkrI	GCNGC	4 cut(s)	532, 692, 795, 846
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	327
PscI	ACATGT	2 cut(s)	75, 682
Psp1406I	AACGTT	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	2 cut(s)	328, 346
PspPI	GGNCC	3 cut(s)	327, 662, 1036
PspPPI	RGGWCCY	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	795
PsuI	RGATCY	1 cut(s)	1082
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	3 cut(s)	74, 552, 938
SaqAI	TTAA	3 cut(s)	357, 494, 917
SatI	GCNGC	4 cut(s)	531, 691, 794, 845
Sau3AI	GATC	6 cut(s)	138, 429, 673, 1082, 1091, 1137
Sau96I	GGNCC	3 cut(s)	327, 662, 1036
SchI	GAGTC	1 cut(s)	519
ScrFI	CCNGG	2 cut(s)	711, 808
SduI	GDGCHC	2 cut(s)	367, 990
SfaNI	GCATC	3 cut(s)	328, 895, 933
SfcI	CTRYAG	2 cut(s)	769, 791
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	3 cut(s)	74, 552, 938
SpeI	ACTAGT	1 cut(s)	253
Sse9I	AATT	5 cut(s)	176, 205, 271, 395, 852
SsiI	CCGC	5 cut(s)	29, 583, 815, 835, 997
SspMI	CTAG	4 cut(s)	254, 350, 719, 1124
StyD4I	CCNGG	2 cut(s)	709, 806
StyI	CCWWGG	1 cut(s)	630
TaiI	ACGT	2 cut(s)	230, 1106
TaqI	TCGA	5 cut(s)	49, 390, 824, 1029, 1087
TasI	AATT	5 cut(s)	176, 205, 271, 395, 852
TfiI	GAWTC	2 cut(s)	374, 821
Tru1I	TTAA	3 cut(s)	357, 494, 917
Tru9I	TTAA	3 cut(s)	357, 494, 917
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	4 cut(s)	530, 690, 793, 844
TspDTI	ATGAA	8 cut(s)	17, 50, 264, 366, 450, 570, 1048, 1065
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	2 cut(s)	205, 395
XceI	RCATGY	2 cut(s)	79, 686
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	4 cut(s)	254, 350, 719, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.