Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014635

Physical Location & Seq

Genomic Coordinates Reverse (-)

5847855 .. 5848625

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0073000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGCAAAGTGGTTGATAACTTCTACAGACCAGATTTGAAGAAAGCGGCCCTTGCTAGGCTCAGTGTGGTTCACAGGAGTCTCAAGGTGTCAAAATCTGGTGCCAGGAAGAGGAATAGGCAGGCTGTTAGAACCTACGGAATCTCTCACCTCTCACTGAAACCTAATCCCCAATTTGTGCAATTTCCCTCCTCCATGAGTATAATACCAGGATCATCATCCGATCGATCTCTCGCAGAAAGATCATATATGCAACAAGACTACCTTTTTTTGCTGGTGAGAAGGTTGACCCCAGCCATTGAAAAAACCCTCCTCACAGAACACTTGGCTCTGGCACTGATTCTAAATTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

118

Amino Acids

13.34

Weight (kDa)

10.8

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11130
malus_domestica	MD02G1123900.v1.1 MD15G1237900.v1.1
prunus_persica	Prupe.7G174600_v2.0.a1 Prupe.7G174600_v2.0.a1 Prupe.7G174600_v2.0.a1
pyrus_communis	pycom02g09680
rosa_chinensis	RchiOBHm_Chr2g0098411
rosa_laevigata	RLG00000016797
rosa_multiflora	Rmu_ssc0000196.1_g000021
rosa_roxburghii	Rroxscaffold_2G00143990
rosa_rugosa	Rorug02G0073000
rosa_samantha	Rh2AG120300 Rh2BG123100 Rh2CG124700 Rh2DG124800
rosa_wichuraiana	Rw2G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	57, 111
AgsI	TTSAA	3 cut(s)	40, 302, 352
AjnI	CCWGG	2 cut(s)	104, 208
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	140, 289
BanI	GGYRCC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	106, 210
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	106, 210
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	106, 210
BpuEI	CTTGAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 111
Bse8I	GATNNNNATC	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	106, 210
BseCI	ATCGAT	1 cut(s)	226
BseGI	GGATG	1 cut(s)	218
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	57, 111
BseMII	CTCAG	1 cut(s)	76
BseRI	GAGGAG	2 cut(s)	181, 302
BseYI	CCCAGC	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	57, 111
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	50
Bsp143I	GATC	4 cut(s)	212, 223, 227, 242
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	101
BssMI	GATC	4 cut(s)	212, 223, 227, 242
Bst2UI	CCWGG	2 cut(s)	106, 210
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	4 cut(s)	215, 226, 230, 245
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	212, 223, 227, 242
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	106, 210
BstSCI	CCNGG	2 cut(s)	104, 208
BstSFI	CTRYAG	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	70, 155, 335
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	49
ClaI	ATCGAT	1 cut(s)	226
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	5 cut(s)	50, 61, 125, 296, 329
CviKI_1	RGCY	5 cut(s)	50, 61, 125, 296, 329
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	4 cut(s)	214, 225, 229, 244
DpnII	GATC	4 cut(s)	212, 223, 227, 242
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	104, 208
FaeI	CATG	1 cut(s)	199
FaiI	YATR	5 cut(s)	197, 203, 247, 249, 251
FalI	AAGNNNNNCTT	4 cut(s)	36, 68, 249, 281
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	3 cut(s)	79, 141, 340
HphI	GGTGA	2 cut(s)	140, 289
Hpy166II	GTNNAC	2 cut(s)	73, 288
Hpy188I	TCNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	73, 288
HpyAV	CCTTC	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	181, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	212, 223, 227, 242
MaeI	CTAG	1 cut(s)	57
MalI	GATC	4 cut(s)	214, 225, 229, 244
MboI	GATC	4 cut(s)	212, 223, 227, 242
MboII	GAAGA	2 cut(s)	52, 121
MluCI	AATT	4 cut(s)	173, 182, 346, 352
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	6 cut(s)	105, 161, 199, 202, 320, 323
MspR9I	CCNGG	2 cut(s)	106, 210
MvaI	CCWGG	2 cut(s)	106, 210
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	4 cut(s)	212, 223, 227, 242
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	141, 340
PkrI	GCNGC	1 cut(s)	49
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	104, 208
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	2 cut(s)	104, 208
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	49
PvuI	CGATCG	1 cut(s)	226
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	4 cut(s)	212, 223, 227, 242
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	106, 210
SetI	ASST	6 cut(s)	90, 137, 153, 166, 267, 287
SfcI	CTRYAG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	173, 182, 346, 352
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	104, 208
TaqI	TCGA	1 cut(s)	226
TasI	AATT	4 cut(s)	173, 182, 346, 352
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	141, 340
TscAI	CASTG	3 cut(s)	70, 162, 342
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	3 cut(s)	70, 162, 342
XapI	RAATTY	1 cut(s)	346
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.