Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014635

Physical Location & Seq

Genomic Coordinates Forward (+)

10806933 .. 10808687

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47320

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTTGGGCTGTGGTGCTTTTGCAAATGTTTACAAGGGGAACTTTGATGATCTGGGAACCCTGGCCATCAAGAGAGCTCACGCCGATTCGTTTCAGAGTGTTGAAGAATTCAGAAACGTGAGGCTACTCTCTAAAGTTAAGCACAGAAACCTTGTAGGACTGGTTGGATATTGTGAAGAACCTGTTGGAGCAAGAGGGGGAAAAGTTTTGATCTATGAATACGTACCCAATGGCTCTCTGCTTGATTATATAATGGGAAAGAAATGGATAAGCTTAAGTTGGAGGCAAAGAGTGAACATAGCCATTGGAGCAGCAAAAGGTTGGTTCCCATCACTTATATTTATTACATTTGAAGAAAGAAAATTAATGTCACTAATGTTGGTTTACAATTTTACTGTTTTCACAGGCATTGCTCATTTGCATGAAGGGGTTAACCCAAGCATAATTCACCGTGACATAAAGCCAAGTAACATCTTGATAGGAGATGGGTTTGAAGCCAAGGTTTCAGATTTTGGACTTGTAAAATCAGGGCCTGTAGGAGACGATTCACATGTCAGTAGCCAAATCAAAGGAACTCCAGGGTACCTCGACCCTGCTTATTGTGCAAGTTTCCACTTATCCCAATTCAGTGATGTCTATAGCTTTGGAATCATTCTTCTCCAACTTGTTTCTTCCCGGCCTGCTGTTGATATGACCGGAAATCGCCCTAATTTTCACATCATTGACTGGGCAAGGCCTAGCTTAGAGAGAGGTCGTGTTGAGGAGATCTTAGATGCTAATCTTTTATCAGAACCATGTAACACAGAGGTGATGCTAAAGATGGGAAAACTTGGCTTGAGGTGTGTTGTGAAAATACCCAAGAACCGTCCTACAATGTCCCAGGTGTGTCGAGAACTCGAAGAAGCCCTCTATTCTGCAGACAATAAACAGCAGTTGAGAGAGAGTCGAAGATCAAATGGTGCACCTCGTCGACCAACAGACCTAGGGTTTGGGAGATCAATTGACTATGATCAATCTCTAAACTCTGTGAGCCTAGATGGCATTGGATTCCAGAAGTTTCATGTAGACCTAGATAGCATGTCCTTTCAGAGCACAAGCTTAAGGTGTTTAGAGAACAATAGTATTGAAATCGACATCGACATCGACGGGGACGATTTGAAAGATATACGAGAGGAAATTAGTACAGAAGAAGACCCAAACTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

402

Amino Acids

44.92

Weight (kDa)

5.91

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 297	5.2e-28	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 299	1.1e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11130
malus_domestica	MD02G1123900.v1.1 MD15G1237900.v1.1
prunus_persica	Prupe.7G174600_v2.0.a1 Prupe.7G174600_v2.0.a1 Prupe.7G174600_v2.0.a1
pyrus_communis	pycom02g09680
rosa_chinensis	RchiOBHm_Chr2g0098411
rosa_laevigata	RLG00000016797
rosa_multiflora	Rmu_ssc0000196.1_g000021
rosa_roxburghii	Rroxscaffold_2G00143990
rosa_rugosa	Rorug02G0073000
rosa_samantha	Rh2AG120300 Rh2BG123100 Rh2CG124700 Rh2DG124800
rosa_wichuraiana	Rw2G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	582
AccI	GTMKAC	2 cut(s)	970, 1065
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	3 cut(s)	225, 584, 1183
AflII	CTTAAG	2 cut(s)	274, 1099
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	6 cut(s)	104, 353, 494, 1127, 1159, 1204
AjnI	CCWGG	3 cut(s)	60, 577, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AleI	CACNNNNGTG	1 cut(s)	806
AluBI	AGCT	5 cut(s)	77, 273, 642, 741, 1098
AluI	AGCT	5 cut(s)	77, 273, 642, 741, 1098
Alw21I	GWGCWC	3 cut(s)	79, 964, 1094
Alw26I	GTCTC	1 cut(s)	534
Alw44I	GTGCAC	1 cut(s)	960
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	4 cut(s)	63, 530, 677, 734
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	971, 1003
AseI	ATTAAT	1 cut(s)	365
Asp718I	GGTACC	1 cut(s)	582
AspA2I	CCTAGG	1 cut(s)	982
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	2 cut(s)	440, 820
AvrII	CCTAGG	1 cut(s)	982
BaeGI	GKGCMC	1 cut(s)	964
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	1197
Bbv12I	GWGCWC	3 cut(s)	79, 964, 1094
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	5 cut(s)	74, 337, 479, 814, 1031
BciT130I	CCWGG	3 cut(s)	62, 579, 881
BclI	TGATCA	1 cut(s)	1009
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	4 cut(s)	738, 983, 1034, 1070
BfmI	CTRYAG	3 cut(s)	534, 637, 915
BfrI	CTTAAG	2 cut(s)	274, 1099
BglI	GCCNNNNNGGC	1 cut(s)	1038
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	1 cut(s)	312
BlnI	CCTAGG	1 cut(s)	982
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	4 cut(s)	62, 579, 676, 881
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	3 cut(s)	58, 326, 584
BmrFI	CCNGG	4 cut(s)	62, 579, 676, 881
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	2 cut(s)	763, 801
BmuI	ACTGGG	1 cut(s)	736
BpiI	GAAGAC	1 cut(s)	1197
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	856
BpuMI	CCSGG	1 cut(s)	676
BsaAI	YACGTR	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	5 cut(s)	60, 498, 578, 879, 982
BsaWI	WCCGGW	1 cut(s)	695
Bse1I	ACTGG	2 cut(s)	165, 731
Bse3DI	GCAATG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	3 cut(s)	62, 579, 881
BseDI	CCNNGG	5 cut(s)	60, 498, 578, 879, 982
BseJI	GATNNNNATC	1 cut(s)	777
BseMI	GCAATG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	165, 731
BseRI	GAGGAG	1 cut(s)	776
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	4 cut(s)	65, 532, 679, 736
BshNI	GGYRCC	1 cut(s)	582
BsiHKAI	GWGCWC	3 cut(s)	79, 964, 1094
BsiSI	CCGG	2 cut(s)	676, 696
BslFI	GGGAC	2 cut(s)	862, 1163
BsmAI	GTCTC	1 cut(s)	534
BsmBI	CGTCTC	1 cut(s)	534
BsmFI	GGGAC	2 cut(s)	862, 1163
BsnI	GGCC	4 cut(s)	65, 532, 679, 736
Bsp1286I	GDGCHC	3 cut(s)	79, 964, 1094
Bsp143I	GATC	6 cut(s)	49, 210, 765, 950, 995, 1009
BspANI	GGCC	4 cut(s)	65, 532, 679, 736
BspLI	GGNNCC	3 cut(s)	58, 326, 584
BspMAI	CTGCAG	1 cut(s)	919
BspT107I	GGYRCC	1 cut(s)	582
BspTI	CTTAAG	2 cut(s)	274, 1099
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	165, 731
BssECI	CCNNGG	5 cut(s)	60, 498, 578, 879, 982
BssMI	GATC	6 cut(s)	49, 210, 765, 950, 995, 1009
BssT1I	CCWWGG	2 cut(s)	498, 982
Bst2UI	CCWGG	3 cut(s)	62, 579, 881
Bst4CI	ACNGT	3 cut(s)	397, 452, 866
BstAFI	CTTAAG	2 cut(s)	274, 1099
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	2 cut(s)	742, 769
BstKTI	GATC	6 cut(s)	52, 213, 768, 953, 998, 1012
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	6 cut(s)	49, 210, 765, 950, 995, 1009
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 602, 1038
BstNI	CCWGG	3 cut(s)	62, 579, 881
BstNSI	RCATGY	2 cut(s)	554, 1081
BstSCI	CCNGG	4 cut(s)	60, 577, 674, 879
BstSFI	CTRYAG	3 cut(s)	534, 637, 915
BstSLI	GKGCMC	1 cut(s)	964
BstSNI	TACGTA	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	1197
BstX2I	RGATCY	1 cut(s)	765
BstYI	RGATCY	1 cut(s)	765
BsuRI	GGCC	4 cut(s)	65, 532, 679, 736
BtsIMutI	CAGTG	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	681
CaiI	CAGNNNCTG	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	3 cut(s)	224, 583, 1182
CviAII	CATG	5 cut(s)	422, 551, 795, 1061, 1078
CviQI	GTAC	3 cut(s)	224, 583, 1182
DdeI	CTNAG	2 cut(s)	742, 769
DpnI	GATC	6 cut(s)	51, 212, 767, 952, 997, 1011
DpnII	GATC	6 cut(s)	49, 210, 765, 950, 995, 1009
EaeI	YGGCCR	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	77
Eco105I	TACGTA	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	498, 982
Eco147I	AGGCCT	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	60, 577, 879
EcoT14I	CCWWGG	2 cut(s)	498, 982
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	498, 982
Esp3I	CGTCTC	1 cut(s)	534
FaeI	CATG	5 cut(s)	425, 554, 798, 1064, 1081
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	2 cut(s)	862, 1163
FatI	CATG	5 cut(s)	421, 550, 794, 1060, 1077
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	2 cut(s)	970, 1065
Fnu4HI	GCNGC	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	4 cut(s)	738, 983, 1034, 1070
GluI	GCNGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	4 cut(s)	65, 532, 679, 736
HapII	CCGG	2 cut(s)	676, 696
Hin1II	CATG	5 cut(s)	425, 554, 798, 1064, 1081
HincII	GTYRAC	2 cut(s)	433, 971
HindII	GTYRAC	2 cut(s)	433, 971
HindIII	AAGCTT	2 cut(s)	271, 1096
HinfI	GANTC	5 cut(s)	86, 545, 648, 943, 1047
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	676, 696
HphI	GGTGA	2 cut(s)	440, 820
Hpy166II	GTNNAC	7 cut(s)	31, 295, 385, 433, 962, 971, 1066
Hpy188I	TCNGA	5 cut(s)	96, 113, 508, 790, 1089
Hpy188III	TCNNGA	4 cut(s)	70, 475, 890, 1051
Hpy8I	GTNNAC	7 cut(s)	31, 295, 385, 433, 962, 971, 1066
Hpy99I	CGWCG	2 cut(s)	972, 1148
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	3 cut(s)	397, 452, 866
HpyCH4IV	ACGT	2 cut(s)	117, 222
HpyCH4V	TGCA	5 cut(s)	23, 421, 605, 917, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 602, 1038
HpyF3I	CTNAG	2 cut(s)	742, 769
HpySE526I	ACGT	2 cut(s)	117, 222
Hsp92II	CATG	5 cut(s)	425, 554, 798, 1064, 1081
KpnI	GGTACC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	1009
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	6 cut(s)	49, 210, 765, 950, 995, 1009
LmnI	GCTCC	2 cut(s)	188, 308
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	763, 801
MaeI	CTAG	4 cut(s)	738, 983, 1034, 1070
MaeII	ACGT	2 cut(s)	117, 222
MaeIII	GTNAC	4 cut(s)	369, 452, 467, 797
MalI	GATC	6 cut(s)	51, 212, 767, 952, 997, 1011
MboI	GATC	6 cut(s)	49, 210, 765, 950, 995, 1009
MboII	GAAGA	9 cut(s)	116, 188, 365, 647, 663, 911, 960, 1199, 1202
MfeI	CAATTG	1 cut(s)	999
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	3 cut(s)	79, 964, 1094
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	8 cut(s)	107, 362, 388, 444, 623, 709, 999, 1176
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	952
MmeI	TCCRAC	4 cut(s)	145, 166, 260, 685
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	5 cut(s)	138, 275, 365, 432, 1100
MslI	CAYNNNNRTG	2 cut(s)	420, 806
Msp20I	TGGCCA	1 cut(s)	65
MspCI	CTTAAG	2 cut(s)	274, 1099
MspI	CCGG	2 cut(s)	676, 696
MspR9I	CCNGG	4 cut(s)	62, 579, 676, 881
MunI	CAATTG	1 cut(s)	999
MvaI	CCWGG	3 cut(s)	62, 579, 881
MwoI	GCNNNNNNNGC	3 cut(s)	308, 602, 1038
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	6 cut(s)	49, 210, 765, 950, 995, 1009
NlaIII	CATG	5 cut(s)	425, 554, 798, 1064, 1081
NlaIV	GGNNCC	3 cut(s)	58, 326, 584
NmuCI	GTSAC	2 cut(s)	369, 452
NspI	RCATGY	2 cut(s)	554, 1081
OliI	CACNNNNGTG	1 cut(s)	806
PceI	AGGCCT	1 cut(s)	736
PciI	ACATGT	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	1149
PfeI	GAWTC	4 cut(s)	86, 545, 648, 1047
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	951
PpsI	GAGTC	1 cut(s)	951
Ppu21I	YACGTR	1 cut(s)	223
PscI	ACATGT	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	60, 577, 879
PspGI	CCWGG	3 cut(s)	60, 577, 879
PspN4I	GGNNCC	3 cut(s)	58, 326, 584
PspPI	GGNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	765
RsaI	GTAC	3 cut(s)	225, 584, 1183
RsaNI	GTAC	3 cut(s)	224, 583, 1182
RseI	CAYNNNNRTG	2 cut(s)	420, 806
SacI	GAGCTC	1 cut(s)	79
SalI	GTCGAC	1 cut(s)	969
SaqAI	TTAA	5 cut(s)	138, 275, 365, 432, 1100
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	6 cut(s)	49, 210, 765, 950, 995, 1009
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	1 cut(s)	952
ScrFI	CCNGG	4 cut(s)	62, 579, 676, 881
SduI	GDGCHC	3 cut(s)	79, 964, 1094
SfaNI	GCATC	2 cut(s)	763, 801
SfcI	CTRYAG	3 cut(s)	534, 637, 915
SmiMI	CAYNNNNRTG	2 cut(s)	420, 806
SmlI	CTYRAG	3 cut(s)	274, 835, 1099
SmoI	CTYRAG	3 cut(s)	274, 835, 1099
SnaBI	TACGTA	1 cut(s)	223
Sse9I	AATT	8 cut(s)	107, 362, 388, 444, 623, 709, 999, 1176
SseBI	AGGCCT	1 cut(s)	736
SspMI	CTAG	4 cut(s)	738, 983, 1034, 1070
SstI	GAGCTC	1 cut(s)	79
StuI	AGGCCT	1 cut(s)	736
StyD4I	CCNGG	4 cut(s)	60, 577, 674, 879
StyI	CCWWGG	2 cut(s)	498, 982
TaaI	ACNGT	3 cut(s)	397, 452, 866
TaiI	ACGT	2 cut(s)	120, 225
TaqI	TCGA	8 cut(s)	588, 889, 897, 946, 970, 1131, 1137, 1143
TasI	AATT	8 cut(s)	107, 362, 388, 444, 623, 709, 999, 1176
TatI	WGTACW	1 cut(s)	1181
TfiI	GAWTC	4 cut(s)	86, 545, 648, 1047
Tru1I	TTAA	5 cut(s)	138, 275, 365, 432, 1100
Tru9I	TTAA	5 cut(s)	138, 275, 365, 432, 1100
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	2 cut(s)	369, 452
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	2 cut(s)	369, 452
TspDTI	ATGAA	3 cut(s)	231, 438, 1049
TspRI	CASTG	1 cut(s)	634
Vha464I	CTTAAG	2 cut(s)	274, 1099
VneI	GTGCAC	1 cut(s)	960
VspI	ATTAAT	1 cut(s)	365
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	2 cut(s)	554, 1081
XmaJI	CCTAGG	1 cut(s)	982
XmiI	GTMKAC	2 cut(s)	970, 1065
XspI	CTAG	4 cut(s)	738, 983, 1034, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.