Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014043

Physical Location & Seq

Genomic Coordinates Forward (+)

6738647 .. 6740258

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCAATTGTCTTGTACCTCTGCCTCTCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTTCCTCTCTCTCCCTCTCCCTCTCCCTCTCTATAAATACAACACTAATCCATTTTCATTTCCCACACTTAAACAAAGTTAAGAGAGTTAAGCAAGAGAGTTCTAAACCTCTAAAAATGGCTTTCAATCTAGCATTCTTGAGCTCAATCTTCATCATCCTTTCGGTATTTTCTACAGTGACTAACGCGCTGAGCTCGAATTACTACGATAAGAGCTGTCCCAATGTCGATCAAATCGTTTCTAATGCCGTCAAGAAGGCGACATCCAACGACAGAACTGTCCCGGCTGCTCTACTCCGGATGCACTTCCACGACTGCTTCATTAGGGGCTGTGATGCATCTGTGCTGTTGAACTCCAAAGGAGGCAACAAAGCTGAGAAAGATGGGCCACCAAATATTTCTCTGCATTCGTTTTTTGTCATTGACGATGCAAAGACACAAGTGGAGGCTTCCTGCCCTGGTGTCGTTTCATGTGCTGATATCTTGGCTTTGGCAGCAAGGGATGCTGTTGTGCAATCCGGAGGTCCGAACTGGGCTGTGCCGAAAGGAAGAAAGGATGGAAGAACATCGAAGGCTAGCGAGACCGTGCAGCTGCCGGCTCCAACCTTCAACATATCTCAACTGCAGCAGAGCTTCTCGCAGAGAGGTCTGTCCTTGAACGACCTGGTGGCTCTTTCAGGAGGGCACACTCTGGGGTTCTCCCACTGCTCATCGTTCCAGAACAGAATCCACAACTTCAACGCCACACACGACGTTGATCCAACACTGAACCCGTCCTTTGCTGCAAAGTTGAAGAATACGTGTCCCATCAAGAACAGGCCGAAGAATGCCGGTGCCACCATGGATCCTTCTACAACAACCTTTGATAATACATACTTCAAGTTGATCCTCCAAGGGAAGAGCTTGTTTTCTTCGGATCAAGCTCTGCTCAGTTTTCCGAAGACTAAAGGTTTGGTTACTCAGTTTGCCTCCTCAAAACAAGCGTTCTTAGATGCTTTCGTGAATTCTATGATAAAGATGAGCAGCATTAATGGTGGGCAAGAGATCAGGAAGGACTGCAGGGTAATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

377

Amino Acids

40.77

Weight (kDa)

9.43

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	99 - 343	1.8e-84	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42180
fragaria_vesca	FvH4_1g11220
malus_domestica	MD02G1124700.v1.1 MD15G1238800.v1.1
prunus_persica	Prupe.7G173700_v2.0.a1 Prupe.7G173700_v2.0.a1
pyrus_communis	pycom02g09740
rosa_chinensis	RchiOBHm_Chr2g0098631
rosa_laevigata	RLG00000016819
rosa_multiflora	Rmu_sc0002776.1_g000019
rosa_roxburghii	Rroxscaffold_2G00143830
rosa_rugosa	Rorug02G0073800
rosa_samantha	Rh2AG121600 Rh2BG125100 Rh2CG126100 Rh2DG127200
rosa_wichuraiana	Rw0G004160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	890
AccII	CGCG	1 cut(s)	245
AccIII	TCCGGA	2 cut(s)	354, 575
AclWI	GGATC	5 cut(s)	809, 896, 909, 937, 981
AcsI	RAATTY	1 cut(s)	1060
AfaI	GTAC	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	857
AgsI	TTSAA	7 cut(s)	184, 409, 667, 715, 796, 850, 937
AjnI	CCWGG	2 cut(s)	514, 720
AluBI	AGCT	8 cut(s)	201, 252, 273, 431, 649, 690, 960, 980
AluI	AGCT	8 cut(s)	201, 252, 273, 431, 649, 690, 960, 980
Alw21I	GWGCWC	2 cut(s)	203, 254
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	5 cut(s)	809, 896, 909, 937, 981
Aor13HI	TCCGGA	2 cut(s)	354, 575
AoxI	GGCC	2 cut(s)	443, 875
ApeKI	GCWGC	7 cut(s)	344, 551, 646, 649, 682, 839, 1080
ApoI	RAATTY	1 cut(s)	1060
ArsI	GACNNNNNNTTYG	2 cut(s)	991, 1023
AseI	ATTAAT	1 cut(s)	1086
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	443, 581
AsuC2I	CCSGG	1 cut(s)	341
AsuNHI	GCTAGC	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	901
BanI	GGYRCC	1 cut(s)	890
BanII	GRGCYC	2 cut(s)	203, 254
BbsI	GAAGAC	1 cut(s)	1004
Bbv12I	GWGCWC	2 cut(s)	203, 254
BbvI	GCAGC	7 cut(s)	331, 563, 636, 658, 694, 826, 1092
BccI	CCATC	3 cut(s)	434, 608, 872
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	2 cut(s)	516, 722
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	2 cut(s)	188, 633
BfmI	CTRYAG	3 cut(s)	231, 680, 1114
BisI	GCNGC	7 cut(s)	345, 552, 647, 650, 683, 840, 1081
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	7 cut(s)	346, 553, 648, 651, 684, 841, 1082
Bme1390I	CCNGG	3 cut(s)	341, 516, 722
Bme18I	GGWCC	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	443, 581
BmiI	GGNNCC	3 cut(s)	657, 892, 903
BmrFI	CCNGG	3 cut(s)	341, 516, 722
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	6 cut(s)	348, 382, 404, 475, 550, 1039
BmtI	GCTAGC	1 cut(s)	636
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	1004
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	858
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	3 cut(s)	514, 897, 949
BsaWI	WCCGGW	2 cut(s)	354, 575
Bse118I	RCCGGY	2 cut(s)	652, 887
Bse1I	ACTGG	1 cut(s)	593
BseAI	TCCGGA	2 cut(s)	354, 575
BseBI	CCWGG	2 cut(s)	516, 722
BseDI	CCNNGG	3 cut(s)	514, 897, 949
BseGI	GGATG	5 cut(s)	213, 320, 363, 565, 619
BseMII	CTCAG	4 cut(s)	239, 423, 1000, 1031
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	1 cut(s)	1018
BseSI	GKGCMC	1 cut(s)	744
BseXI	GCAGC	7 cut(s)	331, 563, 636, 658, 694, 826, 1092
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	445, 877
BshNI	GGYRCC	1 cut(s)	890
BsiHKAI	GWGCWC	2 cut(s)	203, 254
BsiSI	CCGG	5 cut(s)	341, 355, 576, 653, 888
BslFI	GGGAC	3 cut(s)	261, 323, 846
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	3 cut(s)	261, 323, 846
BsmI	GAATGC	3 cut(s)	191, 463, 889
BsnI	GGCC	2 cut(s)	445, 877
Bso31I	GGTCTC	1 cut(s)	632
Bsp1286I	GDGCHC	3 cut(s)	203, 254, 744
Bsp13I	TCCGGA	2 cut(s)	354, 575
Bsp143I	GATC	6 cut(s)	286, 814, 901, 942, 973, 1101
Bsp1720I	GCTNAGC	1 cut(s)	248
Bsp19I	CCATGG	1 cut(s)	897
BspANI	GGCC	2 cut(s)	445, 877
BspCNI	CTCAG	4 cut(s)	240, 424, 999, 1030
BspEI	TCCGGA	2 cut(s)	354, 575
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	3 cut(s)	657, 892, 903
BspMAI	CTGCAG	2 cut(s)	684, 1118
BspOI	GCTAGC	1 cut(s)	636
BspPI	GGATC	5 cut(s)	809, 896, 909, 937, 981
BspQI	GCTCTTC	1 cut(s)	950
BspT107I	GGYRCC	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	632
BsrFI	RCCGGY	2 cut(s)	652, 887
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	2 cut(s)	652, 887
BssECI	CCNNGG	3 cut(s)	514, 897, 949
BssMI	GATC	6 cut(s)	286, 814, 901, 942, 973, 1101
BssT1I	CCWWGG	2 cut(s)	897, 949
Bst2UI	CCWGG	2 cut(s)	516, 722
Bst4CI	ACNGT	3 cut(s)	235, 337, 643
Bst6I	CTCTTC	1 cut(s)	950
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	858
BstC8I	GCNNGC	2 cut(s)	634, 654
BstDEI	CTNAG	5 cut(s)	248, 432, 986, 1017, 1045
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	5 cut(s)	213, 320, 363, 565, 619
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	6 cut(s)	289, 817, 904, 945, 976, 1104
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	6 cut(s)	286, 814, 901, 942, 973, 1101
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 560
BstNI	CCWGG	2 cut(s)	516, 722
BstSCI	CCNGG	3 cut(s)	339, 514, 720
BstSFI	CTRYAG	3 cut(s)	231, 680, 1114
BstSLI	GKGCMC	1 cut(s)	744
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	7 cut(s)	331, 563, 636, 658, 694, 826, 1092
BstV2I	GAAGAC	1 cut(s)	1004
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BsuRI	GGCC	2 cut(s)	445, 877
BtgI	CCRYGG	1 cut(s)	897
BtsCI	GGATG	5 cut(s)	213, 320, 363, 565, 619
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	3 cut(s)	240, 760, 821
Cac8I	GCNNGC	2 cut(s)	634, 654
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	2 cut(s)	652, 887
Cfr13I	GGNCC	2 cut(s)	443, 581
CsiI	ACCWGGT	1 cut(s)	720
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	528, 898
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	5 cut(s)	248, 432, 986, 1017, 1045
DpnI	GATC	6 cut(s)	288, 816, 903, 944, 975, 1103
DpnII	GATC	6 cut(s)	286, 814, 901, 942, 973, 1101
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	950
EarI	CTCTTC	1 cut(s)	950
Ecl136II	GAGCTC	2 cut(s)	201, 252
Eco130I	CCWWGG	2 cut(s)	897, 949
Eco24I	GRGCYC	2 cut(s)	203, 254
Eco31I	GGTCTC	1 cut(s)	632
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	581
Eco53kI	GAGCTC	2 cut(s)	201, 252
EcoICRI	GAGCTC	2 cut(s)	201, 252
EcoRI	GAATTC	1 cut(s)	1060
EcoRII	CCWGG	2 cut(s)	514, 720
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	897, 949
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	2 cut(s)	203, 254
ErhI	CCWWGG	2 cut(s)	897, 949
FaeI	CATG	2 cut(s)	531, 901
FaiI	YATR	6 cut(s)	92, 529, 671, 899, 931, 1067
FaqI	GGGAC	3 cut(s)	261, 323, 846
FatI	CATG	2 cut(s)	527, 897
Fnu4HI	GCNGC	7 cut(s)	345, 552, 647, 650, 683, 840, 1081
FokI	GGATG	5 cut(s)	200, 307, 370, 572, 626
FriOI	GRGCYC	2 cut(s)	203, 254
Fsp4HI	GCNGC	7 cut(s)	345, 552, 647, 650, 683, 840, 1081
FspBI	CTAG	2 cut(s)	188, 633
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	7 cut(s)	345, 552, 647, 650, 683, 840, 1081
HaeIII	GGCC	2 cut(s)	445, 877
HapII	CCGG	5 cut(s)	341, 355, 576, 653, 888
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	531, 901
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	783
HpaII	CCGG	5 cut(s)	341, 355, 576, 653, 888
Hpy188I	TCNGA	3 cut(s)	585, 973, 996
Hpy188III	TCNNGA	9 cut(s)	196, 310, 355, 576, 735, 775, 868, 1057, 1105
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	5 cut(s)	307, 622, 673, 915, 1102
HpyCH4III	ACNGT	3 cut(s)	235, 337, 643
HpyCH4IV	ACGT	2 cut(s)	810, 857
HpyCH4V	TGCA	9 cut(s)	361, 395, 463, 488, 571, 646, 682, 842, 1116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 560
HpyF3I	CTNAG	5 cut(s)	248, 432, 986, 1017, 1045
HpySE526I	ACGT	2 cut(s)	810, 857
Hsp92II	CATG	2 cut(s)	531, 901
HspAI	GCGC	1 cut(s)	245
Kpn2I	TCCGGA	2 cut(s)	354, 575
KroI	GCCGGC	1 cut(s)	652
KroNI	GCCGGC	1 cut(s)	654
Kzo9I	GATC	6 cut(s)	286, 814, 901, 942, 973, 1101
LguI	GCTCTTC	1 cut(s)	950
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	7 cut(s)	331, 563, 636, 658, 694, 826, 1092
LweI	GCATC	6 cut(s)	348, 382, 404, 475, 550, 1039
MabI	ACCWGGT	1 cut(s)	720
MaeI	CTAG	2 cut(s)	188, 633
MaeII	ACGT	2 cut(s)	810, 857
MaeIII	GTNAC	2 cut(s)	235, 1012
MalI	GATC	6 cut(s)	288, 816, 903, 944, 975, 1103
MboI	GATC	6 cut(s)	286, 814, 901, 942, 973, 1101
MboII	GAAGA	8 cut(s)	199, 618, 630, 862, 892, 960, 967, 1009
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	1 cut(s)	901
MhlI	GDGCHC	3 cut(s)	203, 254, 744
MluCI	AATT	4 cut(s)	6, 256, 1060, 1126
MmeI	TCCRAC	3 cut(s)	348, 683, 842
Mph1103I	ATGCAT	1 cut(s)	397
MroI	TCCGGA	2 cut(s)	354, 575
MroNI	GCCGGC	1 cut(s)	652
MseI	TTAA	5 cut(s)	128, 138, 147, 1086, 1129
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	5 cut(s)	341, 355, 576, 653, 888
MspR9I	CCNGG	3 cut(s)	341, 516, 722
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	3 cut(s)	191, 463, 889
MvaI	CCWGG	2 cut(s)	516, 722
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	551, 560
NaeI	GCCGGC	1 cut(s)	654
NciI	CCSGG	1 cut(s)	341
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	6 cut(s)	286, 814, 901, 942, 973, 1101
NgoMIV	GCCGGC	1 cut(s)	652
NheI	GCTAGC	1 cut(s)	632
NlaIII	CATG	2 cut(s)	531, 901
NlaIV	GGNNCC	3 cut(s)	657, 892, 903
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	950
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 804
PctI	GAATGC	3 cut(s)	191, 463, 889
PdiI	GCCGGC	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	783
PkrI	GCNGC	7 cut(s)	346, 553, 648, 651, 684, 841, 1082
Ppu21I	YACGTR	1 cut(s)	858
PshBI	ATTAAT	1 cut(s)	1086
Psp124BI	GAGCTC	2 cut(s)	203, 254
Psp6I	CCWGG	2 cut(s)	514, 720
PspGI	CCWGG	2 cut(s)	514, 720
PspN4I	GGNNCC	3 cut(s)	657, 892, 903
PspPI	GGNCC	2 cut(s)	443, 581
PstI	CTGCAG	2 cut(s)	684, 1118
PsuI	RGATCY	1 cut(s)	901
PvuII	CAGCTG	1 cut(s)	649
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	2 cut(s)	203, 254
SapI	GCTCTTC	1 cut(s)	950
SaqAI	TTAA	5 cut(s)	128, 138, 147, 1086, 1129
SatI	GCNGC	7 cut(s)	345, 552, 647, 650, 683, 840, 1081
Sau3AI	GATC	6 cut(s)	286, 814, 901, 942, 973, 1101
Sau96I	GGNCC	2 cut(s)	443, 581
ScrFI	CCNGG	3 cut(s)	341, 516, 722
SduI	GDGCHC	3 cut(s)	203, 254, 744
SexAI	ACCWGGT	1 cut(s)	720
SfaNI	GCATC	6 cut(s)	348, 382, 404, 475, 550, 1039
SfcI	CTRYAG	3 cut(s)	231, 680, 1114
SinI	GGWCC	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	4 cut(s)	6, 256, 1060, 1126
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	2 cut(s)	188, 633
SstI	GAGCTC	2 cut(s)	203, 254
StyD4I	CCNGG	3 cut(s)	339, 514, 720
StyI	CCWWGG	2 cut(s)	897, 949
TaaI	ACNGT	3 cut(s)	235, 337, 643
TaiI	ACGT	2 cut(s)	813, 860
TaqI	TCGA	3 cut(s)	254, 285, 626
TasI	AATT	4 cut(s)	6, 256, 1060, 1126
TfiI	GAWTC	1 cut(s)	783
Tru1I	TTAA	5 cut(s)	128, 138, 147, 1086, 1129
Tru9I	TTAA	5 cut(s)	128, 138, 147, 1086, 1129
TscAI	CASTG	3 cut(s)	240, 767, 828
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	7 cut(s)	344, 551, 646, 649, 682, 839, 1080
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	104, 199, 367, 516
TspRI	CASTG	3 cut(s)	240, 767, 828
VpaK11BI	GGWCC	1 cut(s)	581
VspI	ATTAAT	1 cut(s)	1086
XapI	RAATTY	1 cut(s)	1060
XspI	CTAG	2 cut(s)	188, 633
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.