Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005780

Physical Location & Seq

Genomic Coordinates Forward (+)

548028 .. 549541

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAAGGCCTAGACTGGACAAAGATAAGATCATTTTGTTCCACTGGTGAAGCGTCTAGTGTTGATGACGACCTTTGGCTTGCTTCCCGTGCTTACTATGGACCCATCATTGAATGTTGTGGGGGCACAGAACTTGCTTCGTCCTACATCATGGGAAGTTGGCTGCAGCCACAAGCTTTTGGAGCATTTAGCACAAAGTCGATGACAACAGGCTTTGTCATATTTGATGAACATGGAATTCCTTATCCAGAGGAGCAAGCTTGTGTCGGGGAAGTGGGTTTGTTCCCGCTATTAATGGGAGCGACTGACAGGCTGCTAAATGCTGATCATGAAAAAGTTTACTTCAAGGGAATGCCAATGTATAATGGAACGCAACTTAGGAGACACGGAGACATACTTAAAAGAACTGTTGGAGGCTATTTGATTGTTCAAGGCAGGTCCGATGATACCATGAACCTCGGTGGCATCAAGACAAGTTCTGTTGAAATCGAGCGCGTCTGTGACCGGGCAGATGAAAGCATCTTGGAGACAGCTGCAGTCAGTGTTGCACCCAAGAGTGGTGGTCCTGAACAGTTGGTTATATATGTCGTATTAAAGAAGGGATACAACTCCGAACCAGACGAGCTGAAGAAGAAATTCTCAAAAGCCATTCAAAGCAACCTTAACCCTTTGTTTAAGGTGAGCTTGGTCAAGATTGTACCAGAATTTCCTCGAACAGCCTCCAACAAGTTACTAAGAAGAGTTTTGAGGGACCAAGTTAAGCATGAGCTCTCTGTTCGGAGCAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010817 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

264

Amino Acids

29.17

Weight (kDa)

8.19

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55320 AT1G55320
fragaria_vesca	FvH4_3g45320 FvH4_3g45320 FvH4_3g45320
malus_domestica	MD03G1006300.v1.1 MD11G1009200.v1.1
prunus_persica	Prupe.6G005900_v2.0.a1
pyrus_communis	pycom03g00640 pycom03g00650
rosa_chinensis	RchiOBHm_Chr5g0083011 RchiOBHm_Chr5g0083021 RchiOBHm_Chr5g0083091
rosa_laevigata	RLG00000037010
rosa_multiflora	Rmu_co8133120.1_g000001 Rmu_sc0003727.1_g000001 Rmu_sc0003727.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001400
rosa_rugosa	Rorug05G0482000 Rorug05G0482100
rosa_samantha	Rh5AG531800 Rh5BG558800 Rh5BG558900 Rh5CG581700 Rh5CG581800 Rh5DG567700
rosa_wichuraiana	Rw5G049660 Rw5G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	426
AccII	CGCG	1 cut(s)	495
AciI	CCGC	1 cut(s)	287
AcsI	RAATTY	3 cut(s)	237, 635, 704
AcuI	CTGAAG	1 cut(s)	647
AfaI	GTAC	1 cut(s)	699
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	5 cut(s)	113, 346, 431, 485, 653
AluBI	AGCT	6 cut(s)	176, 260, 533, 625, 684, 769
AluI	AGCT	6 cut(s)	176, 260, 533, 625, 684, 769
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	3 cut(s)	376, 384, 521
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	4 cut(s)	163, 166, 313, 533
ApoI	RAATTY	3 cut(s)	237, 635, 704
AseI	ATTAAT	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	4 cut(s)	101, 438, 563, 751
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	59, 691
AvaII	GGWCC	4 cut(s)	101, 438, 563, 751
BaeGI	GKGCMC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	4 cut(s)	150, 178, 300, 520
BccI	CCATC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	596
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	3 cut(s)	376, 384, 521
BfaI	CTAG	2 cut(s)	11, 57
BfmI	CTRYAG	2 cut(s)	164, 534
BfuAI	ACCTGC	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	4 cut(s)	164, 167, 314, 534
BlsI	GCNGC	4 cut(s)	165, 168, 315, 535
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	4 cut(s)	101, 438, 563, 751
BmgT120I	GGNCC	4 cut(s)	101, 438, 563, 751
BmiI	GGNNCC	2 cut(s)	103, 752
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	2 cut(s)	474, 528
BpuMI	CCSGG	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	20, 49
BseDI	CCNNGG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	20, 49
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	150, 178, 300, 520
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	3 cut(s)	376, 384, 521
BsmFI	GGGAC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	128, 771
Bsp143I	GATC	2 cut(s)	29, 325
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	103, 752
BspMAI	CTGCAG	2 cut(s)	168, 538
BspMI	ACCTGC	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	20, 49
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	2 cut(s)	29, 325
Bst4CI	ACNGT	2 cut(s)	409, 573
Bst6I	CTCTTC	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	81, 258
BstDEI	CTNAG	2 cut(s)	377, 734
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	2 cut(s)	32, 328
BstMAI	GTCTC	3 cut(s)	376, 384, 521
BstMBI	GATC	2 cut(s)	29, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 182
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	164, 534
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	4 cut(s)	150, 178, 300, 520
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	42, 547
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	81, 258
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	4 cut(s)	101, 438, 563, 751
CseI	GACGC	2 cut(s)	42, 484
Csp6I	GTAC	1 cut(s)	698
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	5 cut(s)	151, 233, 329, 451, 764
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	2 cut(s)	377, 734
DpnI	GATC	2 cut(s)	31, 327
DpnII	GATC	2 cut(s)	29, 325
Eam1104I	CTCTTC	1 cut(s)	733
EarI	CTCTTC	1 cut(s)	733
Ecl136II	GAGCTC	1 cut(s)	769
Eco147I	AGGCCT	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	771
Eco47I	GGWCC	4 cut(s)	101, 438, 563, 751
Eco53kI	GAGCTC	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	769
EcoRI	GAATTC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	771
FaeI	CATG	5 cut(s)	154, 236, 332, 454, 767
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	5 cut(s)	150, 232, 328, 450, 763
FauI	CCCGC	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	164, 167, 314, 534
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	4 cut(s)	164, 167, 314, 534
FspBI	CTAG	2 cut(s)	11, 57
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	4 cut(s)	164, 167, 314, 534
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	505
HgaI	GACGC	2 cut(s)	42, 484
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	154, 236, 332, 454, 767
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HindIII	AAGCTT	2 cut(s)	174, 258
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	2 cut(s)	59, 691
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	3 cut(s)	442, 613, 780
Hpy188III	TCNNGA	5 cut(s)	248, 329, 469, 566, 691
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	2 cut(s)	409, 573
HpyCH4V	TGCA	3 cut(s)	166, 536, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 182
HpyF3I	CTNAG	2 cut(s)	377, 734
Hsp92II	CATG	5 cut(s)	154, 236, 332, 454, 767
HspAI	GCGC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	29, 325
LmnI	GCTCC	4 cut(s)	182, 253, 299, 780
LpnPI	CCDG	9 cut(s)	30, 195, 261, 295, 421, 518, 579, 630, 714
Lsp1109I	GCAGC	4 cut(s)	150, 178, 300, 520
LweI	GCATC	2 cut(s)	474, 528
MaeI	CTAG	2 cut(s)	11, 57
MaeIII	GTNAC	2 cut(s)	500, 729
MalI	GATC	2 cut(s)	31, 327
MboI	GATC	2 cut(s)	29, 325
MboII	GAAGA	3 cut(s)	640, 643, 750
MhlI	GDGCHC	2 cut(s)	128, 771
MluCI	AATT	3 cut(s)	237, 635, 704
MmeI	TCCRAC	2 cut(s)	391, 747
MnlI	CCTC	6 cut(s)	244, 407, 467, 720, 730, 741
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	6 cut(s)	293, 399, 593, 663, 675, 759
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	357
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	2 cut(s)	89, 182
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	2 cut(s)	29, 325
NlaIII	CATG	5 cut(s)	154, 236, 332, 454, 767
NlaIV	GGNNCC	2 cut(s)	103, 752
NmuCI	GTSAC	1 cut(s)	500
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	9
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	165, 168, 315, 535
PshBI	ATTAAT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	771
PspN4I	GGNNCC	2 cut(s)	103, 752
PspPI	GGNCC	4 cut(s)	101, 438, 563, 751
PstI	CTGCAG	2 cut(s)	168, 538
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	771
SaqAI	TTAA	6 cut(s)	293, 399, 593, 663, 675, 759
SatI	GCNGC	4 cut(s)	164, 167, 314, 534
Sau3AI	GATC	2 cut(s)	29, 325
Sau96I	GGNCC	4 cut(s)	101, 438, 563, 751
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	128, 771
SfaNI	GCATC	2 cut(s)	474, 528
SfcI	CTRYAG	2 cut(s)	164, 534
SinI	GGWCC	4 cut(s)	101, 438, 563, 751
Sse9I	AATT	3 cut(s)	237, 635, 704
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	2 cut(s)	11, 57
SstI	GAGCTC	1 cut(s)	771
StuI	AGGCCT	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	409, 573
TaqI	TCGA	3 cut(s)	200, 489, 712
TasI	AATT	3 cut(s)	237, 635, 704
Tru1I	TTAA	6 cut(s)	293, 399, 593, 663, 675, 759
Tru9I	TTAA	6 cut(s)	293, 399, 593, 663, 675, 759
TscAI	CASTG	2 cut(s)	49, 547
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	4 cut(s)	163, 166, 313, 533
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	5 cut(s)	17, 243, 345, 467, 528
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	49, 547
VpaK11BI	GGWCC	4 cut(s)	101, 438, 563, 751
VspI	ATTAAT	1 cut(s)	293
XapI	RAATTY	3 cut(s)	237, 635, 704
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	2 cut(s)	11, 57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.