Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003727.1

Orthogroup ID

OG0005780

Physical Location & Seq

Genomic Coordinates Forward (+)

37828 .. 38837

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003727.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgacaaatattctcttttcatcaggaactacaggagatccaaaagctatcccatggacacaactttcgccaattcgatgtgcagctgattcatgggctcacattgatactcaagttggagatgtcttctgctggcccacaaatttaggatgggttatgggtccagttttaatctactcatgctttctaagtggtgcaactcttgctctctatcatggatctcctctaggtcgtggcttcggaaagtttgttcaggatgcaggagtcactgttttgggtacagttcccagcttagtaaaagcttggaagagtacagagtgtatgaaaggcctagattggacaaagataaaatcattcgcttcgactggtgaagcatctaacgtcgatgatgacctttggctctcttcccgtgcttattacaagcccatctttgaatgttgtggaggcacagaactagcttcttcctacataatggcaagtccactgcagccacaagctttcggggcctttagcacaaagtcgatgacaacaggatttgtcatccttgatgaaagtggagttccctacgtgagtactttctctagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010817 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

195

Amino Acids

20.93

Weight (kDa)

5.24

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55320 AT1G55320
fragaria_vesca	FvH4_3g45320 FvH4_3g45320 FvH4_3g45320
malus_domestica	MD03G1006300.v1.1 MD11G1009200.v1.1
prunus_persica	Prupe.6G005900_v2.0.a1
pyrus_communis	pycom03g00640 pycom03g00650
rosa_chinensis	RchiOBHm_Chr5g0083011 RchiOBHm_Chr5g0083021 RchiOBHm_Chr5g0083091
rosa_laevigata	RLG00000037010
rosa_multiflora	Rmu_co8133120.1_g000001 Rmu_sc0003727.1_g000001 Rmu_sc0003727.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001400
rosa_rugosa	Rorug05G0482000 Rorug05G0482100
rosa_samantha	Rh5AG531800 Rh5BG558800 Rh5BG558900 Rh5CG581700 Rh5CG581800 Rh5DG567700
rosa_wichuraiana	Rw5G049660 Rw5G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	32, 226
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	3 cut(s)	280, 313, 574
AgsI	TTSAA	1 cut(s)	434
AloI	GAACNNNNNNTCC	2 cut(s)	234, 266
AluBI	AGCT	6 cut(s)	47, 86, 291, 302, 458, 497
AluI	AGCT	6 cut(s)	47, 86, 291, 302, 458, 497
AlwI	GGATC	2 cut(s)	32, 226
AoxI	GGCC	3 cut(s)	134, 328, 504
ApeKI	GCWGC	2 cut(s)	83, 487
ApoI	RAATTY	1 cut(s)	142
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AspS9I	GGNCC	3 cut(s)	135, 161, 504
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	95, 499
BccI	CCATC	2 cut(s)	144, 434
BfaI	CTAG	4 cut(s)	227, 332, 455, 582
BfmI	CTRYAG	2 cut(s)	30, 485
BisI	GCNGC	2 cut(s)	84, 488
BlsI	GCNGC	2 cut(s)	85, 489
BmcAI	AGTACT	1 cut(s)	574
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	135, 161, 504
BmiI	GGNNCC	2 cut(s)	162, 505
BmsI	GCATC	2 cut(s)	247, 383
BpiI	GAAGAC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	568
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse1I	ACTGG	2 cut(s)	164, 370
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	155, 262, 540
BseNI	ACTGG	2 cut(s)	164, 370
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	95, 499
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	136, 330, 506
BsnI	GGCC	3 cut(s)	136, 330, 506
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	37, 218
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	3 cut(s)	136, 330, 506
BspLI	GGNNCC	2 cut(s)	162, 505
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	2 cut(s)	32, 226
BsrI	ACTGG	2 cut(s)	164, 370
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	2 cut(s)	37, 218
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	271, 283
Bst6I	CTCTTC	2 cut(s)	302, 409
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	568
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	188, 292
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	155, 262, 540
BstKTI	GATC	2 cut(s)	40, 221
BstMBI	GATC	2 cut(s)	37, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 503
BstSFI	CTRYAG	2 cut(s)	30, 485
BstV1I	GCAGC	2 cut(s)	95, 499
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	37, 218
BstYI	RGATCY	2 cut(s)	37, 218
BsuRI	GGCC	3 cut(s)	136, 330, 506
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	155, 262, 540
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	267, 482
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	135, 161, 504
Csp6I	GTAC	3 cut(s)	279, 312, 573
CviAII	CATG	4 cut(s)	54, 93, 180, 215
CviQI	GTAC	3 cut(s)	279, 312, 573
DdeI	CTNAG	2 cut(s)	188, 292
DpnI	GATC	2 cut(s)	39, 220
DpnII	GATC	2 cut(s)	37, 218
Eam1104I	CTCTTC	2 cut(s)	302, 409
EarI	CTCTTC	2 cut(s)	302, 409
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	4 cut(s)	57, 96, 183, 218
FaiI	YATR	7 cut(s)	55, 94, 158, 181, 216, 323, 470
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	4 cut(s)	53, 92, 179, 214
Fnu4HI	GCNGC	2 cut(s)	84, 488
FokI	GGATG	3 cut(s)	162, 269, 527
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	84, 488
FspBI	CTAG	4 cut(s)	227, 332, 455, 582
GluI	GCNGC	2 cut(s)	84, 488
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	136, 330, 506
Hin1II	CATG	4 cut(s)	57, 96, 183, 218
HindIII	AAGCTT	2 cut(s)	300, 495
HinfI	GANTC	2 cut(s)	89, 264
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	24, 254
Hpy8I	GTNNAC	1 cut(s)	482
Hpy99I	CGWCG	1 cut(s)	386
HpyCH4III	ACNGT	2 cut(s)	271, 283
HpyCH4IV	ACGT	2 cut(s)	381, 567
HpyCH4V	TGCA	4 cut(s)	83, 197, 260, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 503
HpyF3I	CTNAG	2 cut(s)	188, 292
HpySE526I	ACGT	2 cut(s)	381, 567
Hsp92II	CATG	4 cut(s)	57, 96, 183, 218
Kzo9I	GATC	2 cut(s)	37, 218
LpnPI	CCDG	9 cut(s)	9, 18, 118, 177, 239, 246, 301, 351, 516
Lsp1109I	GCAGC	2 cut(s)	95, 499
LweI	GCATC	2 cut(s)	247, 383
MaeI	CTAG	4 cut(s)	227, 332, 455, 582
MaeII	ACGT	2 cut(s)	381, 567
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	39, 220
MboI	GATC	2 cut(s)	37, 218
MboII	GAAGA	4 cut(s)	118, 319, 396, 453
MflI	RGATCY	2 cut(s)	37, 218
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	72, 142
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	2 cut(s)	234, 437
MseI	TTAA	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	203, 503
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	37, 218
NlaIII	CATG	4 cut(s)	57, 96, 183, 218
NlaIV	GGNNCC	2 cut(s)	162, 505
NmuCI	GTSAC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	85, 489
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	568
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	162, 505
PspPI	GGNCC	3 cut(s)	135, 161, 504
PstI	CTGCAG	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	37, 218
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	3 cut(s)	280, 313, 574
RsaNI	GTAC	3 cut(s)	279, 312, 573
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	2 cut(s)	84, 488
Sau3AI	GATC	2 cut(s)	37, 218
Sau96I	GGNCC	3 cut(s)	135, 161, 504
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	2 cut(s)	247, 383
SfcI	CTRYAG	2 cut(s)	30, 485
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	72, 142
SseBI	AGGCCT	1 cut(s)	330
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	4 cut(s)	227, 332, 455, 582
StuI	AGGCCT	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	271, 283
TaiI	ACGT	2 cut(s)	384, 570
TaqI	TCGA	4 cut(s)	76, 362, 384, 521
TasI	AATT	2 cut(s)	72, 142
TatI	WGTACW	2 cut(s)	311, 572
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	2 cut(s)	274, 489
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	83, 487
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	4 cut(s)	9, 81, 338, 564
TspRI	CASTG	2 cut(s)	274, 489
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	142
XspI	CTAG	4 cut(s)	227, 332, 455, 582
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.