Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005780

Physical Location & Seq

Genomic Coordinates Reverse (-)

66318293 .. 66318775

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0482000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCATCAACTACTACTCCGAACTCGGCTGCTGTCACGGCGGCTTCTCCGGCCGGCACCTCTTCACTTGCTTCCTCTCCCGCCGCTGCCACCTCACCCCTCACTCTTTCAGTCGGTGCCATCTCACCCCTCACTCTTCCCGCCGGTGCCGCTCCTCCCGCCGCTGCCACCTCACATCTGGCTCCTCTCGCCGGTGCCGTTTCATCTAACCCTAACCCTACTCTCACCGGACTGAACCTCCTTCGACGGAACTGCGTTTCCTACCTCCGCCCAATTGGCATCCGCATGGCGCTTGGCATGTACCAATTTTTCAGTGAGTATCCCCTGGCGTCTGCCATTGTTGTAGCCTTGTTCCTCCATCACTTCCTCGGTTCGCCTTCATCATTCCAAGTGCTTCTGCTTGCTTTCTCGATTTTCTTGGTGACATTGATGAGGGCCCTTCTATATCTAACCCTGCATCTTATCTTCCACCATGGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010817 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

160

Amino Acids

16.47

Weight (kDa)

10.02

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55320 AT1G55320
fragaria_vesca	FvH4_3g45320 FvH4_3g45320 FvH4_3g45320
malus_domestica	MD03G1006300.v1.1 MD11G1009200.v1.1
prunus_persica	Prupe.6G005900_v2.0.a1
pyrus_communis	pycom03g00640 pycom03g00650
rosa_chinensis	RchiOBHm_Chr5g0083011 RchiOBHm_Chr5g0083021 RchiOBHm_Chr5g0083091
rosa_laevigata	RLG00000037010
rosa_multiflora	Rmu_co8133120.1_g000001 Rmu_sc0003727.1_g000001 Rmu_sc0003727.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001400
rosa_rugosa	Rorug05G0482000 Rorug05G0482100
rosa_samantha	Rh5AG531800 Rh5BG558800 Rh5BG558900 Rh5CG581700 Rh5CG581800 Rh5DG567700
rosa_wichuraiana	Rw5G049660 Rw5G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	56, 116, 146, 194
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	9 cut(s)	41, 81, 84, 141, 150, 159, 162, 268, 283
AcoI	YGGCCR	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	324
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AoxI	GGCC	2 cut(s)	51, 435
ApaI	GGGCCC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	29, 86, 164
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	435, 436
AsuHPI	GGTGA	4 cut(s)	87, 117, 217, 433
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	4 cut(s)	56, 116, 146, 194
BanII	GRGCYC	2 cut(s)	439, 480
BbvI	GCAGC	3 cut(s)	16, 73, 151
BccI	CCATC	2 cut(s)	128, 366
BceAI	ACGGC	2 cut(s)	54, 182
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	7 cut(s)	30, 42, 84, 87, 150, 162, 165
BlsI	GCNGC	7 cut(s)	31, 43, 85, 88, 151, 163, 166
Bme1390I	CCNGG	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	435, 436
BmiI	GGNNCC	6 cut(s)	58, 118, 148, 183, 196, 437
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	288, 466
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	324, 367, 472
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	3 cut(s)	53, 143, 191
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	324, 367, 472
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	144, 174
BseSI	GKGCMC	1 cut(s)	439
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	16, 73, 151
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	53, 437
BshNI	GGYRCC	4 cut(s)	56, 116, 146, 194
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	5 cut(s)	50, 54, 144, 192, 228
BslI	CCNNNNNNNGG	1 cut(s)	191
BsnI	GGCC	2 cut(s)	53, 437
Bsp120I	GGGCCC	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	439, 480
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	9 cut(s)	41, 81, 84, 141, 150, 159, 162, 268, 283
BspANI	GGCC	2 cut(s)	53, 437
BspLI	GGNNCC	6 cut(s)	58, 118, 148, 183, 196, 437
BspT107I	GGYRCC	4 cut(s)	56, 116, 146, 194
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	3 cut(s)	53, 143, 191
BssAI	RCCGGY	3 cut(s)	53, 143, 191
BssECI	CCNNGG	3 cut(s)	324, 367, 472
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	67, 141
BstACI	GRCGYC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	55, 402
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 50, 149, 158, 188, 276
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	3 cut(s)	16, 73, 151
BstZI	CGGCCG	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	53, 437
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	55, 402
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	3 cut(s)	53, 143, 191
Cfr13I	GGNCC	2 cut(s)	435, 436
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	3 cut(s)	286, 298, 473
CviJI	RGCY	7 cut(s)	29, 44, 53, 182, 347, 437, 478
CviKI_1	RGCY	7 cut(s)	29, 44, 53, 182, 347, 437, 478
CviQI	GTAC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	51
EagI	CGGCCG	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	67, 141
EarI	CTCTTC	2 cut(s)	67, 141
EciI	GGCGGA	1 cut(s)	257
EclXI	CGGCCG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	472
Eco24I	GRGCYC	2 cut(s)	439, 480
Eco52I	CGGCCG	1 cut(s)	51
EcoO109I	RGGNCCY	2 cut(s)	435, 436
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	472
EcoT38I	GRGCYC	2 cut(s)	439, 480
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	3 cut(s)	289, 301, 476
FaiI	YATR	4 cut(s)	287, 299, 445, 474
FatI	CATG	3 cut(s)	285, 297, 472
FauI	CCCGC	3 cut(s)	88, 148, 166
Fnu4HI	GCNGC	7 cut(s)	30, 42, 84, 87, 150, 162, 165
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	439, 480
Fsp4HI	GCNGC	7 cut(s)	30, 42, 84, 87, 150, 162, 165
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	7 cut(s)	30, 42, 84, 87, 150, 162, 165
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	53, 437
HapII	CCGG	5 cut(s)	50, 54, 144, 192, 228
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	3 cut(s)	289, 301, 476
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HpaII	CCGG	5 cut(s)	50, 54, 144, 192, 228
HphI	GGTGA	4 cut(s)	87, 117, 217, 433
Hpy188I	TCNGA	2 cut(s)	21, 482
Hpy188III	TCNNGA	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	3 cut(s)	251, 387, 449
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 50, 149, 158, 188, 276
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	3 cut(s)	289, 301, 476
HspAI	GCGC	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	157, 187
LpnPI	CCDG	9 cut(s)	63, 67, 157, 164, 205, 241, 311, 338, 467
Lsp1109I	GCAGC	3 cut(s)	16, 73, 151
LweI	GCATC	2 cut(s)	288, 466
MaeIII	GTNAC	2 cut(s)	34, 421
MbiI	CCGCTC	1 cut(s)	152
MboII	GAAGA	3 cut(s)	54, 128, 457
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	439, 480
MluCI	AATT	2 cut(s)	273, 305
MroNI	GCCGGC	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	86, 164
MspI	CCGG	5 cut(s)	50, 54, 144, 192, 228
MspR9I	CCNGG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	6 cut(s)	38, 50, 149, 158, 188, 276
NaeI	GCCGGC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	472
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	289, 301, 476
NlaIV	GGNNCC	6 cut(s)	58, 118, 148, 183, 196, 437
NmeAIII	GCCGAG	1 cut(s)	5
NmuCI	GTSAC	2 cut(s)	34, 421
NspI	RCATGY	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	55
PkrI	GCNGC	7 cut(s)	31, 43, 85, 88, 151, 163, 166
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	6 cut(s)	58, 118, 148, 183, 196, 437
PspOMI	GGGCCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	435, 436
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	284
SatI	GCNGC	7 cut(s)	30, 42, 84, 87, 150, 162, 165
Sau96I	GGNCC	2 cut(s)	435, 436
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	439, 480
SetI	ASST	5 cut(s)	62, 95, 173, 240, 267
SfaNI	GCATC	2 cut(s)	288, 466
SgrAI	CRCCGGYG	2 cut(s)	143, 191
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	273, 305
SsiI	CCGC	9 cut(s)	41, 81, 84, 141, 150, 159, 162, 268, 283
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	472
TaqI	TCGA	2 cut(s)	244, 410
TasI	AATT	2 cut(s)	273, 305
TauI	GCSGC	4 cut(s)	44, 86, 152, 164
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	34, 421
TseI	GCWGC	3 cut(s)	29, 86, 164
Tsp45I	GTSAC	2 cut(s)	34, 421
TspDTI	ATGAA	2 cut(s)	192, 369
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	319
XceI	RCATGY	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.