Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005780

Physical Location & Seq

Genomic Coordinates Forward (+)

548028 .. 549541

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAAGGCCTAGACTGGACAAAGATAAGATCATTTTGTTCCACTGGTGAAGCGTCTAGTGTTGATGACGACCTTTGGCTTGCTTCCCGTGCTTACTATGGACCCATCATTGAATGTTGTGGGGGCACAGAACTTGCTTCGTCCTACATCATGGGAAGTTGGCTGCAGCCACAAGCTTTTGGAGCATTTAGCACAAAGTCGATGACAACAGGCTTTGTCATATTTGATGAACATGGAATTCCTTATCCAGAGGAGCAAGCTTGTGTCGGGGAAGTGGGTTTGTTCCCGCTATTAATGGGAGCGACTGACAGGCTGCTAAATGCTGATCATGAAAAAGTTTACTTCAAGGGAATGCCAATGTATAATGGAACGCAACTTAGGAGACACGGAGACATACTTAAAAGAACTGTTGGAGGCTATTTGATTGTTCAAGGCAGGTCCGATGATACCATGAACCTCGGTGGCATCAAGACAAGTTCTGTTGAAATCGAGCGCGTCTGTGACCGGGCAGATGAAAGCATCTTGGAGACAGCTGCAGTCAGTGTTGCACCCAAGAGTGGTGGTCCTGAACAGTTGGTTATATATGTCGTATTAAAGAAGGGATACAACTCCGAACCAGACGAGCTGAAGAAGAAATTCTCAAAAGCCATTCAAAGCAACCTTAACCCTTTGTTTAAGGTGAGCTTGGTCAAGATTGTACCAGAATTTCCTCGAACAGCCTCCAACAAGTTACTAAGAAGAGTTTTGAGGGACCAAGTTAAGCATGAGCTCTCTGTTCGGAGCAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010817 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

264

Amino Acids

29.17

Weight (kDa)

8.19

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	174 - 243	1.4e-06	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55320 AT1G55320
fragaria_vesca	FvH4_3g45320 FvH4_3g45320 FvH4_3g45320
malus_domestica	MD03G1006300.v1.1 MD11G1009200.v1.1
prunus_persica	Prupe.6G005900_v2.0.a1
pyrus_communis	pycom03g00640 pycom03g00650
rosa_chinensis	RchiOBHm_Chr5g0083011 RchiOBHm_Chr5g0083021 RchiOBHm_Chr5g0083091
rosa_laevigata	RLG00000037010
rosa_multiflora	Rmu_co8133120.1_g000001 Rmu_sc0003727.1_g000001 Rmu_sc0003727.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001400
rosa_rugosa	Rorug05G0482000 Rorug05G0482100
rosa_samantha	Rh5AG531800 Rh5BG558800 Rh5BG558900 Rh5CG581700 Rh5CG581800 Rh5DG567700
rosa_wichuraiana	Rw5G049660 Rw5G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	426
AccII	CGCG	1 cut(s)	495
AciI	CCGC	1 cut(s)	287
AcsI	RAATTY	3 cut(s)	237, 635, 704
AcuI	CTGAAG	1 cut(s)	647
AfaI	GTAC	1 cut(s)	699
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	5 cut(s)	113, 346, 431, 485, 653
AluBI	AGCT	6 cut(s)	176, 260, 533, 625, 684, 769
AluI	AGCT	6 cut(s)	176, 260, 533, 625, 684, 769
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	3 cut(s)	376, 384, 521
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	4 cut(s)	163, 166, 313, 533
ApoI	RAATTY	3 cut(s)	237, 635, 704
AseI	ATTAAT	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	4 cut(s)	101, 438, 563, 751
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	59, 691
AvaII	GGWCC	4 cut(s)	101, 438, 563, 751
BaeGI	GKGCMC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	4 cut(s)	150, 178, 300, 520
BccI	CCATC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	596
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	3 cut(s)	376, 384, 521
BfaI	CTAG	2 cut(s)	11, 57
BfmI	CTRYAG	2 cut(s)	164, 534
BfuAI	ACCTGC	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	4 cut(s)	164, 167, 314, 534
BlsI	GCNGC	4 cut(s)	165, 168, 315, 535
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	4 cut(s)	101, 438, 563, 751
BmgT120I	GGNCC	4 cut(s)	101, 438, 563, 751
BmiI	GGNNCC	2 cut(s)	103, 752
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	2 cut(s)	474, 528
BpuMI	CCSGG	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	20, 49
BseDI	CCNNGG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	20, 49
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	150, 178, 300, 520
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	3 cut(s)	376, 384, 521
BsmFI	GGGAC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	128, 771
Bsp143I	GATC	2 cut(s)	29, 325
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	103, 752
BspMAI	CTGCAG	2 cut(s)	168, 538
BspMI	ACCTGC	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	20, 49
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	2 cut(s)	29, 325
Bst4CI	ACNGT	2 cut(s)	409, 573
Bst6I	CTCTTC	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	81, 258
BstDEI	CTNAG	2 cut(s)	377, 734
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	2 cut(s)	32, 328
BstMAI	GTCTC	3 cut(s)	376, 384, 521
BstMBI	GATC	2 cut(s)	29, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 182
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	164, 534
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	4 cut(s)	150, 178, 300, 520
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	42, 547
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	81, 258
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	4 cut(s)	101, 438, 563, 751
CseI	GACGC	2 cut(s)	42, 484
Csp6I	GTAC	1 cut(s)	698
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	5 cut(s)	151, 233, 329, 451, 764
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	2 cut(s)	377, 734
DpnI	GATC	2 cut(s)	31, 327
DpnII	GATC	2 cut(s)	29, 325
Eam1104I	CTCTTC	1 cut(s)	733
EarI	CTCTTC	1 cut(s)	733
Ecl136II	GAGCTC	1 cut(s)	769
Eco147I	AGGCCT	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	771
Eco47I	GGWCC	4 cut(s)	101, 438, 563, 751
Eco53kI	GAGCTC	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	769
EcoRI	GAATTC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	771
FaeI	CATG	5 cut(s)	154, 236, 332, 454, 767
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	5 cut(s)	150, 232, 328, 450, 763
FauI	CCCGC	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	164, 167, 314, 534
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	4 cut(s)	164, 167, 314, 534
FspBI	CTAG	2 cut(s)	11, 57
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	4 cut(s)	164, 167, 314, 534
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	505
HgaI	GACGC	2 cut(s)	42, 484
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	154, 236, 332, 454, 767
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HindIII	AAGCTT	2 cut(s)	174, 258
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	2 cut(s)	59, 691
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	3 cut(s)	442, 613, 780
Hpy188III	TCNNGA	5 cut(s)	248, 329, 469, 566, 691
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	2 cut(s)	409, 573
HpyCH4V	TGCA	3 cut(s)	166, 536, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 182
HpyF3I	CTNAG	2 cut(s)	377, 734
Hsp92II	CATG	5 cut(s)	154, 236, 332, 454, 767
HspAI	GCGC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	29, 325
LmnI	GCTCC	4 cut(s)	182, 253, 299, 780
LpnPI	CCDG	9 cut(s)	30, 195, 261, 295, 421, 518, 579, 630, 714
Lsp1109I	GCAGC	4 cut(s)	150, 178, 300, 520
LweI	GCATC	2 cut(s)	474, 528
MaeI	CTAG	2 cut(s)	11, 57
MaeIII	GTNAC	2 cut(s)	500, 729
MalI	GATC	2 cut(s)	31, 327
MboI	GATC	2 cut(s)	29, 325
MboII	GAAGA	3 cut(s)	640, 643, 750
MhlI	GDGCHC	2 cut(s)	128, 771
MluCI	AATT	3 cut(s)	237, 635, 704
MmeI	TCCRAC	2 cut(s)	391, 747
MnlI	CCTC	6 cut(s)	244, 407, 467, 720, 730, 741
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	6 cut(s)	293, 399, 593, 663, 675, 759
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	357
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	2 cut(s)	89, 182
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	2 cut(s)	29, 325
NlaIII	CATG	5 cut(s)	154, 236, 332, 454, 767
NlaIV	GGNNCC	2 cut(s)	103, 752
NmuCI	GTSAC	1 cut(s)	500
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	9
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	165, 168, 315, 535
PshBI	ATTAAT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	771
PspN4I	GGNNCC	2 cut(s)	103, 752
PspPI	GGNCC	4 cut(s)	101, 438, 563, 751
PstI	CTGCAG	2 cut(s)	168, 538
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	771
SaqAI	TTAA	6 cut(s)	293, 399, 593, 663, 675, 759
SatI	GCNGC	4 cut(s)	164, 167, 314, 534
Sau3AI	GATC	2 cut(s)	29, 325
Sau96I	GGNCC	4 cut(s)	101, 438, 563, 751
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	128, 771
SfaNI	GCATC	2 cut(s)	474, 528
SfcI	CTRYAG	2 cut(s)	164, 534
SinI	GGWCC	4 cut(s)	101, 438, 563, 751
Sse9I	AATT	3 cut(s)	237, 635, 704
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	2 cut(s)	11, 57
SstI	GAGCTC	1 cut(s)	771
StuI	AGGCCT	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	409, 573
TaqI	TCGA	3 cut(s)	200, 489, 712
TasI	AATT	3 cut(s)	237, 635, 704
Tru1I	TTAA	6 cut(s)	293, 399, 593, 663, 675, 759
Tru9I	TTAA	6 cut(s)	293, 399, 593, 663, 675, 759
TscAI	CASTG	2 cut(s)	49, 547
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	4 cut(s)	163, 166, 313, 533
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	5 cut(s)	17, 243, 345, 467, 528
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	49, 547
VpaK11BI	GGWCC	4 cut(s)	101, 438, 563, 751
VspI	ATTAAT	1 cut(s)	293
XapI	RAATTY	3 cut(s)	237, 635, 704
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	2 cut(s)	11, 57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.