Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004387

Physical Location & Seq

Genomic Coordinates Forward (+)

2885587 .. 2888497

Gene Structure 2911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGGGATTTTCTTTTCCCTTTGGTTTAGTATCCACATCTGACCATCTTGTTCCTGAGAAAGAATTTCACTTGCTGGCATCTGTCCTCTTTGGCATCTTTCTCTGCAATATTGTTTACAGATTAGCGCGCCTTATTAGCCTTCTCAGCGTTGAGGGATATGATGAACTCAGCAAAGCAGAAAAAGTTGAATGGAATAACCGGGGGTTCTCAACTGTACATGCTATCGCCGTAGCATTTGCATCTTTTTACCTTGTAGTGTTGTCAGATACTTTTCATGAGGATCATCGTGATGAGCCAATCGTTAGTAGAAGATCTACCTTTTCAGATACAACATTGGGGATCTCCTTCGGATATTTTCTGTCAGACTTGGGAATGATTTTTTGGTATTTTCCTGCTTTAGGTGGACTGGAGTATGTTTTGCATCATGCACTATCTATGTACTCGATCTTTCTCGCCCTTTTAAGTGGAAAAGGCCAGATTTACATACTAATGGTTCTGTTCTCTGAGAGCACGACTCCTTTTGTAAACATGAGATGGTACTTGGATGTTGCTGGTAGGAAGAACTCTAACCTGTACTTCTTCAATGGCGCAGTATTGTTCCTGGGGTGGCTGGTCAAGACAATGTTCCCTCTGGTATTTTACAGCTTGCTCCCGGTGCCTCCAATGCTGGCTACAATGAATCTCATTTGGTTTTGGAAGATCACCAAAGGTTTGATCAAAACTGTTTCCAAGGCCAAACACAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

251

Amino Acids

28.46

Weight (kDa)

7.86

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	64 - 205	7.3e-23	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10360 AT4G10360 AT4G10360
fragaria_vesca	FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280
malus_domestica	MD03G1046000.v1.1 MD11G1048300.v1.1
prunus_persica	Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1
pyrus_communis	pycom03g03620 pycom11g03940
rosa_chinensis	RchiOBHm_Chr5g0074081
rosa_laevigata	RLG00000036452
rosa_multiflora	Rmu_sc0000573.1_g000071
rosa_roxburghii	Rroxscaffold_1G00007320
rosa_rugosa	Rorug05G0429100
rosa_samantha	Rh5AG486700 Rh5BG507000 Rh5CG530500 Rh5DG519400
rosa_wichuraiana	Rw5G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	658
AccII	CGCG	1 cut(s)	130
AclWI	GGATC	2 cut(s)	291, 350
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	4 cut(s)	219, 443, 542, 578
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	191, 586
AjnI	CCWGG	1 cut(s)	603
AjuI	GAANNNNNNNTTGG	2 cut(s)	367, 399
AluBI	AGCT	1 cut(s)	648
AluI	AGCT	1 cut(s)	648
Alw21I	GWGCWC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	291, 350
AoxI	GGCC	2 cut(s)	475, 735
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	3 cut(s)	130, 132, 593
AsuC2I	CCSGG	2 cut(s)	203, 656
AsuHPI	GGTGA	1 cut(s)	697
BanI	GGYRCC	1 cut(s)	658
Bbv12I	GWGCWC	1 cut(s)	515
BccI	CCATC	2 cut(s)	54, 531
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	43
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	2 cut(s)	203, 656
BfuI	GTATCC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	314
Bme1390I	CCNGG	3 cut(s)	203, 605, 656
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	3 cut(s)	203, 605, 656
BmsI	GCATC	4 cut(s)	89, 105, 251, 433
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	203, 656
BsaJI	CCNNGG	3 cut(s)	202, 604, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	3 cut(s)	202, 604, 732
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	4 cut(s)	48, 160, 184, 498
BseNI	ACTGG	1 cut(s)	414
BsePI	GCGCGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	477, 737
BshNI	GGYRCC	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	2 cut(s)	202, 656
BslI	CCNNNNNNNGG	1 cut(s)	401
BsnI	GGCC	2 cut(s)	477, 737
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	6 cut(s)	283, 314, 342, 447, 702, 717
BspANI	GGCC	2 cut(s)	477, 737
BspCNI	CTCAG	4 cut(s)	49, 159, 183, 499
BspFNI	CGCG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	660
BspPI	GGATC	2 cut(s)	291, 350
BspT107I	GGYRCC	1 cut(s)	658
BsrGI	TGTACA	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	3 cut(s)	202, 604, 732
BssHII	GCGCGC	1 cut(s)	128
BssMI	GATC	6 cut(s)	283, 314, 342, 447, 702, 717
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	217, 727, 746
BstAUI	TGTACA	1 cut(s)	217
BstC8I	GCNNGC	4 cut(s)	78, 130, 650, 672
BstDEI	CTNAG	4 cut(s)	57, 146, 170, 507
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	3 cut(s)	130, 132, 593
BstKTI	GATC	6 cut(s)	286, 317, 345, 450, 705, 720
BstMBI	GATC	6 cut(s)	283, 314, 342, 447, 702, 717
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 147, 658, 667
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	201, 603, 654
BstUI	CGCG	1 cut(s)	130
BstX2I	RGATCY	2 cut(s)	314, 342
BstYI	RGATCY	2 cut(s)	314, 342
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	477, 737
BtsCI	GGATG	1 cut(s)	553
Cac8I	GCNNGC	4 cut(s)	78, 130, 650, 672
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	3 cut(s)	130, 132, 593
Csp6I	GTAC	4 cut(s)	218, 442, 541, 577
CviAII	CATG	4 cut(s)	221, 278, 428, 532
CviJI	RGCY	7 cut(s)	141, 298, 477, 613, 648, 674, 737
CviKI_1	RGCY	7 cut(s)	141, 298, 477, 613, 648, 674, 737
CviQI	GTAC	4 cut(s)	218, 442, 541, 577
DdeI	CTNAG	4 cut(s)	57, 146, 170, 507
DpnI	GATC	6 cut(s)	285, 316, 344, 449, 704, 719
DpnII	GATC	6 cut(s)	283, 314, 342, 447, 702, 717
Eco130I	CCWWGG	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	4 cut(s)	224, 281, 431, 535
FaiI	YATR	8 cut(s)	162, 222, 279, 417, 429, 440, 488, 533
FatI	CATG	4 cut(s)	220, 277, 427, 531
FbaI	TGATCA	1 cut(s)	717
FokI	GGATG	1 cut(s)	560
GlaI	GCGC	3 cut(s)	129, 131, 592
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	477, 737
HapII	CCGG	2 cut(s)	202, 656
HhaI	GCGC	3 cut(s)	130, 132, 593
Hin1II	CATG	4 cut(s)	224, 281, 431, 535
Hin6I	GCGC	3 cut(s)	128, 130, 591
HinP1I	GCGC	3 cut(s)	128, 130, 591
HinfI	GANTC	2 cut(s)	517, 682
HpaII	CCGG	2 cut(s)	202, 656
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	3 cut(s)	118, 407, 529
Hpy188I	TCNGA	6 cut(s)	43, 268, 328, 353, 367, 508
Hpy188III	TCNNGA	4 cut(s)	56, 278, 290, 619
Hpy8I	GTNNAC	3 cut(s)	118, 407, 529
HpyAV	CCTTC	2 cut(s)	152, 358
HpyCH4III	ACNGT	3 cut(s)	217, 727, 746
HpyCH4V	TGCA	4 cut(s)	108, 242, 424, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 147, 658, 667
HpyF3I	CTNAG	4 cut(s)	57, 146, 170, 507
Hsp92II	CATG	4 cut(s)	224, 281, 431, 535
HspAI	GCGC	3 cut(s)	128, 130, 591
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	6 cut(s)	283, 314, 342, 447, 702, 717
LmnI	GCTCC	1 cut(s)	657
LweI	GCATC	4 cut(s)	89, 105, 251, 433
MalI	GATC	6 cut(s)	285, 316, 344, 449, 704, 719
MboI	GATC	6 cut(s)	283, 314, 342, 447, 702, 717
MboII	GAAGA	4 cut(s)	324, 574, 574, 712
MflI	RGATCY	2 cut(s)	314, 342
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	5 cut(s)	98, 148, 274, 642, 672
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	2 cut(s)	291, 491
MspI	CCGG	2 cut(s)	202, 656
MspR9I	CCNGG	3 cut(s)	203, 605, 656
MvaI	CCWGG	1 cut(s)	605
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	138, 147, 658, 667
NciI	CCSGG	2 cut(s)	203, 656
NdeII	GATC	6 cut(s)	283, 314, 342, 447, 702, 717
NlaIII	CATG	4 cut(s)	224, 281, 431, 535
NlaIV	GGNNCC	1 cut(s)	660
NspI	RCATGY	1 cut(s)	224
PagI	TCATGA	1 cut(s)	277
PauI	GCGCGC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	682
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	1 cut(s)	660
PsuI	RGATCY	2 cut(s)	314, 342
PteI	GCGCGC	1 cut(s)	128
RsaI	GTAC	4 cut(s)	219, 443, 542, 578
RsaNI	GTAC	4 cut(s)	218, 442, 541, 577
RseI	CAYNNNNRTG	2 cut(s)	291, 491
SaqAI	TTAA	1 cut(s)	464
Sau3AI	GATC	6 cut(s)	283, 314, 342, 447, 702, 717
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	3 cut(s)	203, 605, 656
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	6 cut(s)	255, 323, 406, 576, 650, 715
SfaNI	GCATC	4 cut(s)	89, 105, 251, 433
SmiMI	CAYNNNNRTG	2 cut(s)	291, 491
Sse9I	AATT	1 cut(s)	65
SspI	AATATT	1 cut(s)	112
StyD4I	CCNGG	3 cut(s)	201, 603, 654
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	3 cut(s)	217, 727, 746
TaqI	TCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	65
TatI	WGTACW	3 cut(s)	217, 441, 576
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	180, 266, 695
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.