Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009546

Physical Location & Seq

Genomic Coordinates Forward (+)

7589646 .. 7590857

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGGTTGGAAAAGTGCTGGTTTTGTTCCTCTACCGTATACCCTGGACATGGGATTCAGTTTGTTCGCAACGATGCAAAGATTTTTCGATTCTGCAGATCCAAATGCCACAAGAACTTTAAGATGAAGAGGAATCCGCGAAAGGTGAAGTGGACTAAGGCCTATAGGCGGTTGCGTGGAAAGGACATGACGCAGGACTCAACCTTTGAGTTTGAGAGAAAACGAAATAGGCCGGAGAGATATGACAGGAGTCTTACAGAAGACACTCTGAAGGCAATTAAGAAGATCGATAAAGTCAGAATCGAGAGAGAGGCCAGACACCACAAGAATAGGATGAAGGGCAAGAATGTCAAAGAGCAAAATGAGAAAAGGAAAGAGATTGACCATAGCCTCCACTTGGTCATATCTCCGATTGCGCAACAGCAAGAGCCATCACTCGTCAAGGTTTCCCAACCGCATCTCGAGAAACAAGTTGCCATGGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

163

Amino Acids

19.62

Weight (kDa)

10.2

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	1 - 65	1.6e-33	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44860 AT2G44860
fragaria_vesca	FvH4_3g24270
malus_domestica	MD03G1135200.v1.1 MD11G1157900.v1.1
prunus_persica	Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.6G119600_v2.0.a1
pyrus_communis	pycom03g09110 pycom11g12820
rosa_chinensis	RchiOBHm_Chr5g0043411
rosa_laevigata	RLG00000034185
rosa_multiflora	Rmu_sc0000060.1_g000067
rosa_roxburghii	Rroxscaffold_1G00037470
rosa_rugosa	Rorug05G0205700 Rorug05G0205700
rosa_samantha	Rh5AG291500 Rh5BG298100 Rh5CG327600 Rh5DG307500
rosa_wichuraiana	Rw5G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	139
AciI	CCGC	3 cut(s)	137, 169, 455
AclWI	GGATC	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	50, 168, 397
AjnI	CCWGG	1 cut(s)	43
AlwI	GGATC	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	159, 230, 312
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspLEI	GCGC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	267
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	45
BfmI	CTRYAG	2 cut(s)	94, 163
Bme1390I	CCNGG	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	64, 466
BoxI	GACNNNNGTC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	267
Bsa29I	ATCGAT	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	43, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 168, 397
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	43, 477
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	50, 168, 397
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	161, 232, 314
BshVI	ATCGAT	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	50, 168, 397
BsnI	GGCC	3 cut(s)	161, 232, 314
BsoBI	CYCGRG	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	98, 285
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	3 cut(s)	137, 169, 455
BspANI	GGCC	3 cut(s)	161, 232, 314
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	43, 477
BssMI	GATC	2 cut(s)	98, 285
BssNAI	GTATAC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	2 cut(s)	101, 288
BstMBI	GATC	2 cut(s)	98, 285
BstNI	CCWGG	1 cut(s)	45
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	2 cut(s)	94, 163
BstUI	CGCG	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	161, 232, 314
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	1 cut(s)	199
CviAII	CATG	3 cut(s)	50, 187, 478
CviJI	RGCY	5 cut(s)	161, 232, 314, 390, 430
CviKI_1	RGCY	5 cut(s)	161, 232, 314, 390, 430
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	100, 287
DpnII	GATC	2 cut(s)	98, 285
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	53, 190, 481
FaiI	YATR	8 cut(s)	40, 51, 165, 188, 243, 387, 404, 479
FatI	CATG	3 cut(s)	49, 186, 477
FblI	GTMKAC	1 cut(s)	39
FokI	GGATG	1 cut(s)	346
FspI	TGCGCA	1 cut(s)	417
GlaI	GCGC	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	161, 232, 314
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	53, 190, 481
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	6 cut(s)	55, 90, 133, 197, 250, 300
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	40, 153
Hpy188I	TCNGA	3 cut(s)	270, 299, 411
Hpy188III	TCNNGA	3 cut(s)	304, 461, 463
Hpy8I	GTNNAC	2 cut(s)	40, 153
HpyAV	CCTTC	2 cut(s)	265, 331
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	77, 96
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	53, 190, 481
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	98, 285
LpnPI	CCDG	7 cut(s)	4, 30, 57, 179, 232, 246, 328
LweI	GCATC	2 cut(s)	64, 466
MalI	GATC	2 cut(s)	100, 287
MboI	GATC	2 cut(s)	98, 285
MboII	GAAGA	3 cut(s)	139, 272, 295
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	191, 259
MnlI	CCTC	5 cut(s)	40, 123, 304, 401, 475
MseI	TTAA	2 cut(s)	120, 279
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	2 cut(s)	98, 285
NlaIII	CATG	3 cut(s)	53, 190, 481
NsbI	TGCGCA	1 cut(s)	417
PaeR7I	CTCGAG	1 cut(s)	461
PceI	AGGCCT	1 cut(s)	161
PfeI	GAWTC	4 cut(s)	55, 90, 133, 300
PleI	GAGTC	2 cut(s)	191, 258
PpsI	GAGTC	2 cut(s)	191, 258
PshAI	GACNNNNGTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	120, 279
Sau3AI	GATC	2 cut(s)	98, 285
SchI	GAGTC	2 cut(s)	191, 259
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	4 cut(s)	8, 147, 206, 447
SfaNI	GCATC	2 cut(s)	64, 466
SfcI	CTRYAG	2 cut(s)	94, 163
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	276
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	137, 169, 455
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	4 cut(s)	88, 288, 303, 462
TasI	AATT	1 cut(s)	276
TfiI	GAWTC	4 cut(s)	55, 90, 133, 300
Tru1I	TTAA	2 cut(s)	120, 279
Tru9I	TTAA	2 cut(s)	120, 279
TspDTI	ATGAA	2 cut(s)	140, 350
XhoI	CTCGAG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.