Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008406

Physical Location & Seq

Genomic Coordinates Reverse (-)

15307761 .. 15309740

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGTCCCTAACAATCTCACCCAACTCTCTCCAACCCTCTACATTTCAATTTACCTTTCATTCCTCGCAAAATTACAGCTTCACCCAGCCATGGCTTCCGCATCCGCTTATCCGTAAGCGACCTAGGACCCAAATTTCCTGCGTTTCGACCCGACCCAAAAGAAATCCGGGACCAAGGACCGAGGACCCGGAAGTCCGGGAGGTGGTTCGGACGCTCATGAGGAGCTTCAGTGACAAAGAGCCGTTGTTGAAGACGCTAAATAAGTACGTTAAGATTGTGAGGACGGAGCATTGCTTTATGCTTTTTGAAGAGCTTGGGAAGACTGATAAGTGGCTTCAGTGCTTGGAGGTGTTCAGATGGATGCAAAGACAGCGGTGGTACGTTGCTGATAACGGTGTGTATTCAAAATTGATCTCGGTTATGGGAAAGAAGGGCCAAACTCGGATGGCAATGTGGCTTTTCTCTGAGATGCGTAATAGTGGGTGCCGGCCTGATACTTCTGTCTACAATGCACTTATCTCAGCCCACCTAAACTCCAAGGACAAAGCAAAGGCTTTGGACAAAGCTCTTGGATACTTCAACAAGATGAAGGGAATGGAACGATGCCAACCCAGCATTGTGACGTACAACATTCTTTTGAGAGCTTTTGCACAATCTCGAAATGTAGAGAAAGTTAATGCTTTATTTAAGGATCTTGATGAGAGCGTTGCTTCCCCTGATATTTATACGTATAATGGTGTAATGGATGCATATGGGAAGAATGGGAATATAAGAGAAATGGAATCCGTGCTTTCTCGGATGAAAAGTAATCAGTGTAAGCCTGACATCATCACCTTTAATTTGCTGATTGATTCATATGGGAAGAAGCAACAATTCGATAAGATGGAACAGGTATTTAAGAGCTTACTTCGATCCAAGGAGAAACCAACACTTCCAACGTTTAATTCAATGATCATAAATTATGGGAAGGCAAGGCTTATGGAGAAAGCGGAACATGTATTCCAGAAGATGACTGACATGAAATATACGCCAAGCTTCATAACATACGAGAGTCTTATCATGATGTATGGGTTCTGCGATTGTGTTTCAAAAGCTAGGGATGTATTTGACAGGTTGGCTGATTCTGGAAGGGAGCTAAAGGTTTCAACACTGAATGCGATGCTTGATGTTTACTGCATGAATGGTTTGCCCATGGAAGCTGATAAGCTTTTTGTCAGTGCAAATAGTATTGGGGTACACCCAAATGTATCAACGTATAAACTTCTATACAAGTATTACACTAAGGGCAACATGAAGGAGCTTCTCGAGAAACTGCTGAAGTCCATGGAAAATGATGGTATTGTCCCTAATAAGAGGTTCTTTCTAGAGGCTCTTGGGGCATTTTTCTCTTCACCAGGGAGTCCAGGCTCCGTGACTGCTACAACTGCTTTGAGCAGACAGCAGGATGGCACAAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

487

Amino Acids

55.82

Weight (kDa)

9.5

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	133 - 176	7.1e-09	PPR repeat family
PPR_long	PF17177	141 - 274	6.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	164 - 217	2.3e-09	PPR repeat family
PPR_2	PF13041	204 - 251	5.6e-10	PPR repeat family
PPR_3	PF13812	228 - 288	2.9e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	239 - 287	1e-12	PPR repeat family
PPR	PF01535	242 - 272	8.3e-07	PPR repeat
PPR_2	PF13041	274 - 318	1.8e-07	PPR repeat family
PPR_2	PF13041	312 - 353	3.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39620 AT4G39620
fragaria_vesca	FvH4_4g12030 FvH4_4g12030
malus_domestica	MD03G1187700.v1.1 MD11G1203200.v1.1
prunus_persica	Prupe.4G236100_v2.0.a1
pyrus_communis	pycom03g14050 pycom11g17630
rosa_chinensis	RchiOBHm_Chr4g0409671
rosa_laevigata	RLG00000008536
rosa_multiflora	Rmu_co8330861.1_g000001 Rmu_sc0008746.1_g000016 Rmu_sc0015305.1_g000009
rosa_roxburghii	Rroxscaffold_5G00354190
rosa_rugosa	Rorug04G0095900 Rorug04G0096000
rosa_samantha	Rh4AG157400 Rh4BG157000 Rh4CG167600 Rh4DG151400
rosa_wichuraiana	Rw4G012880 Rw4G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	483
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	4 cut(s)	98, 104, 373, 989
AclI	AACGTT	1 cut(s)	938
AclWI	GGATC	2 cut(s)	699, 906
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	3 cut(s)	211, 320, 1337
AfaI	GTAC	4 cut(s)	266, 380, 626, 1236
AfiI	CCNNNNNNNGG	2 cut(s)	90, 202
AflIII	ACRYGT	1 cut(s)	994
AgsI	TTSAA	8 cut(s)	47, 250, 308, 405, 580, 948, 1089, 1146
AjnI	CCWGG	2 cut(s)	1393, 1402
AjuI	GAANNNNNNNTTGG	2 cut(s)	928, 960
AloI	GAACNNNNNNTCC	2 cut(s)	984, 1016
AlwI	GGATC	2 cut(s)	699, 906
Ama87I	CYCGRG	1 cut(s)	1304
AoxI	GGCC	2 cut(s)	433, 488
ApoI	RAATTY	1 cut(s)	132
AspA2I	CCTAGG	1 cut(s)	122
AspS9I	GGNCC	5 cut(s)	126, 170, 177, 184, 433
AsuC2I	CCSGG	3 cut(s)	168, 188, 197
AsuHPI	GGTGA	4 cut(s)	9, 73, 823, 1383
AvaI	CYCGRG	1 cut(s)	1304
AvaII	GGWCC	4 cut(s)	126, 170, 177, 184
AvrII	CCTAGG	1 cut(s)	122
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BanI	GGYRCC	1 cut(s)	483
BbsI	GAAGAC	2 cut(s)	257, 326
BccI	CCATC	5 cut(s)	351, 439, 877, 1328, 1439
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	2 cut(s)	1395, 1404
BciVI	GTATCC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	951
BcnI	CCSGG	3 cut(s)	168, 188, 197
BfaI	CTAG	3 cut(s)	123, 1095, 1364
BfuI	GTATCC	1 cut(s)	566
BlnI	CCTAGG	1 cut(s)	122
Bme1390I	CCNGG	5 cut(s)	168, 188, 197, 1395, 1404
Bme18I	GGWCC	4 cut(s)	126, 170, 177, 184
BmeT110I	CYCGRG	1 cut(s)	1304
BmgT120I	GGNCC	5 cut(s)	126, 170, 177, 184, 433
BmiI	GGNNCC	5 cut(s)	128, 171, 186, 485, 1408
BmrFI	CCNGG	5 cut(s)	168, 188, 197, 1395, 1404
BmsI	GCATC	6 cut(s)	109, 351, 459, 593, 736, 1149
BpiI	GAAGAC	2 cut(s)	257, 326
BpuMI	CCSGG	3 cut(s)	168, 188, 197
BsaAI	YACGTR	1 cut(s)	729
BsaJI	CCNNGG	9 cut(s)	89, 122, 173, 180, 537, 915, 1191, 1323, 1394
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 518, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 202
Bse118I	RCCGGY	1 cut(s)	486
Bse3DI	GCAATG	2 cut(s)	289, 456
BseBI	CCWGG	2 cut(s)	1395, 1404
BseDI	CCNNGG	9 cut(s)	89, 122, 173, 180, 537, 915, 1191, 1323, 1394
BseGI	GGATG	7 cut(s)	100, 366, 450, 751, 804, 1105, 1450
BseLI	CCNNNNNNNGG	2 cut(s)	90, 202
BseMI	GCAATG	2 cut(s)	289, 456
BseMII	CTCAG	2 cut(s)	456, 534
BseRI	GAGGAG	1 cut(s)	235
BseYI	CCCAGC	2 cut(s)	84, 611
BshFI	GGCC	2 cut(s)	435, 490
BshNI	GGYRCC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	1304
BsiSI	CCGG	4 cut(s)	167, 188, 196, 487
BslFI	GGGAC	2 cut(s)	183, 1328
BslI	CCNNNNNNNGG	2 cut(s)	90, 202
BsmFI	GGGAC	2 cut(s)	183, 1328
BsmI	GAATGC	1 cut(s)	1159
BsnI	GGCC	2 cut(s)	435, 490
BsoBI	CYCGRG	1 cut(s)	1304
Bsp143I	GATC	4 cut(s)	411, 691, 911, 951
Bsp19I	CCATGG	3 cut(s)	89, 1191, 1323
BspACI	CCGC	4 cut(s)	98, 104, 373, 989
BspANI	GGCC	2 cut(s)	435, 490
BspCNI	CTCAG	2 cut(s)	457, 533
BspHI	TCATGA	2 cut(s)	216, 1059
BspLI	GGNNCC	5 cut(s)	128, 171, 186, 485, 1408
BspPI	GGATC	2 cut(s)	699, 906
BspQI	GCTCTTC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	289, 456
BsrFI	RCCGGY	1 cut(s)	486
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	9 cut(s)	89, 122, 173, 180, 537, 915, 1191, 1323, 1394
BssMI	GATC	4 cut(s)	411, 691, 911, 951
BssT1I	CCWWGG	7 cut(s)	89, 122, 173, 537, 915, 1191, 1323
Bst2UI	CCWGG	2 cut(s)	1395, 1404
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	2 cut(s)	303, 1393
BstBAI	YACGTR	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	3 cut(s)	465, 520, 1281
BstDSI	CCRYGG	3 cut(s)	89, 1191, 1323
BstF5I	GGATG	7 cut(s)	100, 366, 450, 751, 804, 1105, 1450
BstKTI	GATC	4 cut(s)	414, 694, 914, 954
BstMBI	GATC	4 cut(s)	411, 691, 911, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	370, 612, 1376, 1424
BstNI	CCWGG	2 cut(s)	1395, 1404
BstNSI	RCATGY	1 cut(s)	998
BstSCI	CCNGG	5 cut(s)	166, 186, 195, 1393, 1402
BstSNI	TACGTA	1 cut(s)	729
BstV2I	GAAGAC	2 cut(s)	257, 326
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	435, 490
BtgI	CCRYGG	3 cut(s)	89, 1191, 1323
BtgZI	GCGATG	1 cut(s)	1172
BtsCI	GGATG	7 cut(s)	100, 366, 450, 751, 804, 1105, 1450
BtsIMutI	CAGTG	5 cut(s)	235, 344, 818, 1148, 1222
Cac8I	GCNNGC	1 cut(s)	488
CciI	TCATGA	2 cut(s)	216, 1059
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	5 cut(s)	126, 170, 177, 184, 433
CseI	GACGC	2 cut(s)	220, 262
Csp6I	GTAC	4 cut(s)	265, 379, 625, 1235
CviAII	CATG	9 cut(s)	90, 217, 995, 1018, 1060, 1177, 1192, 1291, 1324
CviQI	GTAC	4 cut(s)	265, 379, 625, 1235
DdeI	CTNAG	3 cut(s)	465, 520, 1281
DpnI	GATC	4 cut(s)	413, 693, 913, 953
DpnII	GATC	4 cut(s)	411, 691, 911, 951
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	303, 1393
EarI	CTCTTC	2 cut(s)	303, 1393
Eco105I	TACGTA	1 cut(s)	729
Eco130I	CCWWGG	7 cut(s)	89, 122, 173, 537, 915, 1191, 1323
Eco47I	GGWCC	4 cut(s)	126, 170, 177, 184
Eco57I	CTGAAG	3 cut(s)	211, 320, 1337
Eco88I	CYCGRG	1 cut(s)	1304
EcoO109I	RGGNCCY	2 cut(s)	126, 184
EcoRII	CCWGG	2 cut(s)	1393, 1402
EcoT14I	CCWWGG	7 cut(s)	89, 122, 173, 537, 915, 1191, 1323
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	7 cut(s)	89, 122, 173, 537, 915, 1191, 1323
FaeI	CATG	9 cut(s)	93, 220, 998, 1021, 1063, 1180, 1195, 1294, 1327
FalI	AAGNNNNNCTT	2 cut(s)	1343, 1375
FaqI	GGGAC	2 cut(s)	183, 1328
FatI	CATG	9 cut(s)	89, 216, 994, 1017, 1059, 1176, 1191, 1290, 1323
FauNDI	CATATG	2 cut(s)	751, 856
FbaI	TGATCA	1 cut(s)	951
FblI	GTMKAC	1 cut(s)	504
FokI	GGATG	7 cut(s)	87, 373, 457, 758, 811, 1112, 1457
FspBI	CTAG	3 cut(s)	123, 1095, 1364
GsaI	CCCAGC	2 cut(s)	88, 615
HaeIII	GGCC	2 cut(s)	435, 490
HapII	CCGG	4 cut(s)	167, 188, 196, 487
HgaI	GACGC	2 cut(s)	220, 262
Hin1II	CATG	9 cut(s)	93, 220, 998, 1021, 1063, 1180, 1195, 1294, 1327
HindIII	AAGCTT	2 cut(s)	1033, 1205
HinfI	GANTC	5 cut(s)	782, 851, 1051, 1121, 1399
HpaII	CCGG	4 cut(s)	167, 188, 196, 487
HphI	GGTGA	4 cut(s)	9, 73, 823, 1383
Hpy166II	GTNNAC	3 cut(s)	505, 1171, 1237
Hpy188I	TCNGA	5 cut(s)	210, 356, 444, 466, 798
Hpy188III	TCNNGA	9 cut(s)	217, 657, 695, 1003, 1060, 1125, 1304, 1306, 1364
Hpy8I	GTNNAC	3 cut(s)	505, 1171, 1237
HpyAV	CCTTC	5 cut(s)	424, 583, 961, 1122, 1288
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	6 cut(s)	267, 381, 623, 728, 938, 1253
HpyCH4V	TGCA	6 cut(s)	364, 512, 650, 749, 1176, 1220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	370, 612, 1376, 1424
HpyF3I	CTNAG	3 cut(s)	465, 520, 1281
HpySE526I	ACGT	6 cut(s)	267, 381, 623, 728, 938, 1253
Hsp92II	CATG	9 cut(s)	93, 220, 998, 1021, 1063, 1180, 1195, 1294, 1327
KroI	GCCGGC	1 cut(s)	486
KroNI	GCCGGC	1 cut(s)	488
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	4 cut(s)	411, 691, 911, 951
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	5 cut(s)	222, 286, 1132, 1297, 1412
LweI	GCATC	6 cut(s)	109, 351, 459, 593, 736, 1149
MaeI	CTAG	3 cut(s)	123, 1095, 1364
MaeII	ACGT	6 cut(s)	267, 381, 623, 728, 938, 1253
MaeIII	GTNAC	3 cut(s)	230, 619, 1411
MalI	GATC	4 cut(s)	413, 693, 913, 953
MboI	GATC	4 cut(s)	411, 691, 911, 951
MboII	GAAGA	7 cut(s)	262, 320, 331, 769, 874, 1018, 1380
MflI	RGATCY	1 cut(s)	691
MluCI	AATT	8 cut(s)	47, 70, 132, 407, 838, 872, 943, 958
MlyI	GAGTC	2 cut(s)	1060, 1408
MmeI	TCCRAC	2 cut(s)	55, 959
MnlI	CCTC	9 cut(s)	46, 73, 175, 193, 213, 273, 340, 1347, 1360
Mph1103I	ATGCAT	1 cut(s)	751
MroNI	GCCGGC	1 cut(s)	486
MseI	TTAA	6 cut(s)	270, 675, 687, 837, 897, 942
MslI	CAYNNNNRTG	1 cut(s)	1242
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	4 cut(s)	167, 188, 196, 487
MspR9I	CCNGG	5 cut(s)	168, 188, 197, 1395, 1404
Mva1269I	GAATGC	1 cut(s)	1159
MvaI	CCWGG	2 cut(s)	1395, 1404
MwoI	GCNNNNNNNGC	4 cut(s)	370, 612, 1376, 1424
NaeI	GCCGGC	1 cut(s)	488
NciI	CCSGG	3 cut(s)	168, 188, 197
NcoI	CCATGG	3 cut(s)	89, 1191, 1323
NdeI	CATATG	2 cut(s)	751, 856
NdeII	GATC	4 cut(s)	411, 691, 911, 951
NgoMIV	GCCGGC	1 cut(s)	486
NlaIII	CATG	9 cut(s)	93, 220, 998, 1021, 1063, 1180, 1195, 1294, 1327
NlaIV	GGNNCC	5 cut(s)	128, 171, 186, 485, 1408
NmuCI	GTSAC	3 cut(s)	230, 619, 1411
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	1 cut(s)	998
PaeR7I	CTCGAG	1 cut(s)	1304
PagI	TCATGA	2 cut(s)	216, 1059
PciI	ACATGT	1 cut(s)	994
PciSI	GCTCTTC	1 cut(s)	303
PctI	GAATGC	1 cut(s)	1159
PdiI	GCCGGC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	782, 851, 1121
PfoI	TCCNGGA	2 cut(s)	166, 195
PleI	GAGTC	2 cut(s)	1059, 1407
PpsI	GAGTC	2 cut(s)	1059, 1407
Ppu21I	YACGTR	1 cut(s)	729
PpuMI	RGGWCCY	2 cut(s)	126, 184
PscI	ACATGT	1 cut(s)	994
Psp1406I	AACGTT	1 cut(s)	938
Psp5II	RGGWCCY	2 cut(s)	126, 184
Psp6I	CCWGG	2 cut(s)	1393, 1402
PspFI	CCCAGC	2 cut(s)	84, 611
PspGI	CCWGG	2 cut(s)	1393, 1402
PspN4I	GGNNCC	5 cut(s)	128, 171, 186, 485, 1408
PspPI	GGNCC	5 cut(s)	126, 170, 177, 184, 433
PspPPI	RGGWCCY	2 cut(s)	126, 184
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	4 cut(s)	266, 380, 626, 1236
RsaNI	GTAC	4 cut(s)	265, 379, 625, 1235
RseI	CAYNNNNRTG	1 cut(s)	1242
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	6 cut(s)	270, 675, 687, 837, 897, 942
Sau3AI	GATC	4 cut(s)	411, 691, 911, 951
Sau96I	GGNCC	5 cut(s)	126, 170, 177, 184, 433
SchI	GAGTC	2 cut(s)	1060, 1408
ScrFI	CCNGG	5 cut(s)	168, 188, 197, 1395, 1404
SfaNI	GCATC	6 cut(s)	109, 351, 459, 593, 736, 1149
Sfr274I	CTCGAG	1 cut(s)	1304
SinI	GGWCC	4 cut(s)	126, 170, 177, 184
SlaI	CTCGAG	1 cut(s)	1304
SmiMI	CAYNNNNRTG	1 cut(s)	1242
SmlI	CTYRAG	1 cut(s)	1304
SmoI	CTYRAG	1 cut(s)	1304
SnaBI	TACGTA	1 cut(s)	729
Sse9I	AATT	8 cut(s)	47, 70, 132, 407, 838, 872, 943, 958
SsiI	CCGC	4 cut(s)	98, 104, 373, 989
SspMI	CTAG	3 cut(s)	123, 1095, 1364
StyD4I	CCNGG	5 cut(s)	166, 186, 195, 1393, 1402
StyI	CCWWGG	7 cut(s)	89, 122, 173, 537, 915, 1191, 1323
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	6 cut(s)	270, 384, 626, 731, 941, 1256
TaqI	TCGA	5 cut(s)	146, 658, 876, 910, 1305
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	8 cut(s)	47, 70, 132, 407, 838, 872, 943, 958
TfiI	GAWTC	3 cut(s)	782, 851, 1121
Tru1I	TTAA	6 cut(s)	270, 675, 687, 837, 897, 942
Tru9I	TTAA	6 cut(s)	270, 675, 687, 837, 897, 942
TscAI	CASTG	5 cut(s)	235, 344, 818, 1155, 1222
TseFI	GTSAC	3 cut(s)	230, 619, 1411
Tsp45I	GTSAC	3 cut(s)	230, 619, 1411
TspDTI	ATGAA	8 cut(s)	47, 602, 815, 843, 1027, 1034, 1193, 1307
TspGWI	ACGGA	4 cut(s)	101, 299, 775, 1399
TspRI	CASTG	5 cut(s)	235, 344, 818, 1155, 1222
VpaK11BI	GGWCC	4 cut(s)	126, 170, 177, 184
XapI	RAATTY	1 cut(s)	132
XbaI	TCTAGA	1 cut(s)	1363
XceI	RCATGY	1 cut(s)	998
XhoI	CTCGAG	1 cut(s)	1304
XmaJI	CCTAGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	3 cut(s)	123, 1095, 1364
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.