Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008406

Physical Location & Seq

Genomic Coordinates Forward (+)

15112079 .. 15112608

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0096000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAACGACGAGCTCTGCAACCCCCTACTCTGTTCCACCAATTCCTCTGTCGCCCCCGCCGTTGCTGCTACCACCGCAAACAGACATTCTTCGCTCTCAAACGGCGCCATTCATAGCGATTCGTCTTCTTCTGACAACACTAATACCAAAAATCACGGAGACTCAAGCGGCAGTGGTGGTCCTGGAAATGGCGGAGCTCTTGAGGAGGCTCGGTTTCGGTATAAGAACTTCGTGACGGCGCTCCGAGCTGTTCTGGCAGAAATTCCTAATTCTCAGAAGTACATGGAGTCGTGGGTGGTGATGGAGAGTTTGAAGGCACAGGGCTTGTGGAGGACGTCCTCGGCGCCTTTGACGGTGAGGCAGGTGCTGATGGGGATGACGCCGAGTGGGGTGGAAGAAGGGGGTGACGTGGGAGTCCTTGAGGATGAACCAGCGGCGGTGGTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

149

Amino Acids

15.52

Weight (kDa)

4.93

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39620 AT4G39620
fragaria_vesca	FvH4_4g12030 FvH4_4g12030
malus_domestica	MD03G1187700.v1.1 MD11G1203200.v1.1
prunus_persica	Prupe.4G236100_v2.0.a1
pyrus_communis	pycom03g14050 pycom11g17630
rosa_chinensis	RchiOBHm_Chr4g0409671
rosa_laevigata	RLG00000008536
rosa_multiflora	Rmu_co8330861.1_g000001 Rmu_sc0008746.1_g000016 Rmu_sc0015305.1_g000009
rosa_roxburghii	Rroxscaffold_5G00354190
rosa_rugosa	Rorug04G0095900 Rorug04G0096000
rosa_samantha	Rh4AG157400 Rh4BG157000 Rh4CG167600 Rh4DG151400
rosa_wichuraiana	Rw4G012880 Rw4G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
AasI	GACNNNNNNGTC	1 cut(s)	413
AatII	GACGTC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	2 cut(s)	104, 343
AciI	CCGC	6 cut(s)	57, 75, 168, 192, 434, 437
AcsI	RAATTY	1 cut(s)	261
AcyI	GRCGYC	4 cut(s)	105, 335, 344, 380
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	13, 197, 248
AluI	AGCT	3 cut(s)	13, 197, 248
Alw21I	GWGCWC	2 cut(s)	15, 199
Alw26I	GTCTC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	261
AspLEI	GCGC	3 cut(s)	107, 241, 346
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	310, 367, 416
AvaII	GGWCC	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	104, 343
BanII	GRGCYC	2 cut(s)	15, 199
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	2 cut(s)	15, 199
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	295, 364
BceAI	ACGGC	3 cut(s)	44, 118, 252
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	153
BfoI	RGCGCY	3 cut(s)	108, 242, 347
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	3 cut(s)	66, 169, 435
BlsI	GCNGC	3 cut(s)	67, 170, 436
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	179
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	106, 345
BmrFI	CCNGG	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	3 cut(s)	148, 221, 440
BsaHI	GRCGYC	4 cut(s)	105, 335, 344, 380
BsaJI	CCNNGG	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	381, 430
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	52
BshNI	GGYRCC	2 cut(s)	104, 343
BsiHKAI	GWGCWC	2 cut(s)	15, 199
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	15, 199
BspACI	CCGC	6 cut(s)	57, 75, 168, 192, 434, 437
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	106, 345
BspMI	ACCTGC	1 cut(s)	352
BspT107I	GGYRCC	2 cut(s)	104, 343
BssECI	CCNNGG	1 cut(s)	339
BssNI	GRCGYC	4 cut(s)	105, 335, 344, 380
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	355
BstACI	GRCGYC	4 cut(s)	105, 335, 344, 380
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	381, 430
BstH2I	RGCGCY	3 cut(s)	108, 242, 347
BstHHI	GCGC	3 cut(s)	107, 241, 346
BstMAI	GTCTC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 74, 245, 254
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	381, 430
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	367
CfoI	GCGC	3 cut(s)	107, 241, 346
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	5 cut(s)	13, 197, 209, 248, 324
CviKI_1	RGCY	5 cut(s)	13, 197, 209, 248, 324
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	273
DinI	GGCGCC	2 cut(s)	106, 345
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	207
Ecl136II	GAGCTC	2 cut(s)	13, 197
Eco24I	GRGCYC	2 cut(s)	15, 199
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	2 cut(s)	13, 197
EcoICRI	GAGCTC	2 cut(s)	13, 197
EcoRII	CCWGG	1 cut(s)	181
EcoT38I	GRGCYC	2 cut(s)	15, 199
EgeI	GGCGCC	2 cut(s)	106, 345
EheI	GGCGCC	2 cut(s)	106, 345
FaeI	CATG	1 cut(s)	286
FaiI	YATR	3 cut(s)	114, 222, 284
FatI	CATG	1 cut(s)	282
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	66, 169, 435
FokI	GGATG	2 cut(s)	388, 437
FriOI	GRGCYC	2 cut(s)	15, 199
Fsp4HI	GCNGC	3 cut(s)	66, 169, 435
GlaI	GCGC	3 cut(s)	106, 240, 345
GluI	GCNGC	3 cut(s)	66, 169, 435
HaeII	RGCGCY	3 cut(s)	108, 242, 347
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	3 cut(s)	107, 241, 346
Hin1I	GRCGYC	4 cut(s)	105, 335, 344, 380
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	3 cut(s)	105, 239, 344
HinP1I	GCGC	3 cut(s)	105, 239, 344
HinfI	GANTC	4 cut(s)	119, 161, 287, 414
HphI	GGTGA	3 cut(s)	310, 367, 416
Hpy188I	TCNGA	3 cut(s)	133, 245, 276
Hpy188III	TCNNGA	2 cut(s)	200, 232
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	307, 392
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	335, 408
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 74, 245, 254
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	335, 408
Hsp92I	GRCGYC	4 cut(s)	105, 335, 344, 380
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	3 cut(s)	105, 239, 344
KasI	GGCGCC	2 cut(s)	104, 343
LmnI	GCTCC	2 cut(s)	194, 246
LpnPI	CCDG	6 cut(s)	168, 195, 239, 305, 347, 444
Lsp1109I	GCAGC	1 cut(s)	52
MaeII	ACGT	2 cut(s)	335, 408
MaeIII	GTNAC	2 cut(s)	232, 404
MboII	GAAGA	4 cut(s)	81, 117, 120, 407
MhlI	GDGCHC	2 cut(s)	15, 199
MluCI	AATT	3 cut(s)	40, 261, 268
Mly113I	GGCGCC	2 cut(s)	105, 344
MlyI	GAGTC	3 cut(s)	155, 296, 423
MnlI	CCTC	7 cut(s)	55, 196, 199, 324, 349, 351, 415
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	65, 74, 245, 254
NarI	GGCGCC	2 cut(s)	105, 344
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	2 cut(s)	106, 345
NmeAIII	GCCGAG	2 cut(s)	320, 408
NmuCI	GTSAC	2 cut(s)	232, 404
PaqCI	CACCTGC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	67, 170, 436
PleI	GAGTC	3 cut(s)	155, 295, 422
PluTI	GGCGCC	2 cut(s)	108, 347
PpsI	GAGTC	3 cut(s)	155, 295, 422
Psp124BI	GAGCTC	2 cut(s)	15, 199
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	106, 345
PspPI	GGNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacI	GAGCTC	2 cut(s)	15, 199
SatI	GCNGC	3 cut(s)	66, 169, 435
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	3 cut(s)	155, 296, 423
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	15, 199
SetI	ASST	6 cut(s)	15, 199, 250, 338, 366, 411
SfoI	GGCGCC	2 cut(s)	106, 345
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	3 cut(s)	163, 200, 419
SmoI	CTYRAG	3 cut(s)	163, 200, 419
Sse9I	AATT	3 cut(s)	40, 261, 268
SsiI	CCGC	6 cut(s)	57, 75, 168, 192, 434, 437
SspDI	GGCGCC	2 cut(s)	104, 343
SstI	GAGCTC	2 cut(s)	15, 199
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	338, 411
TasI	AATT	3 cut(s)	40, 261, 268
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	2 cut(s)	171, 437
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	2 cut(s)	232, 404
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	2 cut(s)	232, 404
TspDTI	ATGAA	3 cut(s)	17, 101, 441
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.