Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008406

Physical Location & Seq

Genomic Coordinates Reverse (-)

19825597 .. 19826109

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATCATAAATTACGCTAAGGCAAGGCTTAAGGAGAAAGCGGAACATGTATTGCTGAAGATGACTGACATGAAATACACGCCAAGCTTCATAACATATGAGAGTCTTGTCATGATGTATGGGTTCTGTGATTGTGTTTCAAAAGCTAGGGAGGTATTTGACAGGTTGGCTGAATCTGGAAGGGAGTTAAAATTTTCAACGCTTAATGCGATGCTTGATGTTTACTGCATGAATGGTTTGCCCATGGAAGCTAATAAGCATTTTGTGCGTGCAAATAGTATTGGGGTACGCCCAAATGTATCAACGTATAAACTTTTATACAAGGCTTACACCAAGGCCAACATGAAGGAGCTTCTAGAGAAACTGCTGAAATCCATGGAAAACGATGGTATTGTCCCAAATAAGAGGTTCTTTCTAGAGGCTCTTGGGGCAGTTTTCTCTTCACCAGGGAGTCCAGAGTCTGTGAGTGCCACAACTGGTTTGAGCAGACCGCAGGATGGGGAAAAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

171

Amino Acids

19.16

Weight (kDa)

9.05

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39620 AT4G39620
fragaria_vesca	FvH4_4g12030 FvH4_4g12030
malus_domestica	MD03G1187700.v1.1 MD11G1203200.v1.1
prunus_persica	Prupe.4G236100_v2.0.a1
pyrus_communis	pycom03g14050 pycom11g17630
rosa_chinensis	RchiOBHm_Chr4g0409671
rosa_laevigata	RLG00000008536
rosa_multiflora	Rmu_co8330861.1_g000001 Rmu_sc0008746.1_g000016 Rmu_sc0015305.1_g000009
rosa_roxburghii	Rroxscaffold_5G00354190
rosa_rugosa	Rorug04G0095900 Rorug04G0096000
rosa_samantha	Rh4AG157400 Rh4BG157000 Rh4CG167600 Rh4DG151400
rosa_wichuraiana	Rw4G012880 Rw4G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 491
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflII	CTTAAG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	141, 198
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	4 cut(s)	87, 146, 251, 352
AluI	AGCT	4 cut(s)	87, 146, 251, 352
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	435
BccI	CCATC	2 cut(s)	380, 491
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	3 cut(s)	147, 356, 416
BfrI	CTTAAG	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	4 cut(s)	243, 333, 375, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	4 cut(s)	243, 333, 375, 446
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	2 cut(s)	243, 375
BspACI	CCGC	2 cut(s)	41, 491
BspANI	GGCC	1 cut(s)	338
BspHI	TCATGA	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	4 cut(s)	243, 333, 375, 446
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	3 cut(s)	243, 333, 375
Bst2UI	CCWGG	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	445
BstAFI	CTTAAG	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	2 cut(s)	243, 375
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 428
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	338
BtgI	CCRYGG	2 cut(s)	243, 375
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	461
CciI	TCATGA	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	7 cut(s)	47, 70, 112, 229, 244, 343, 376
CviJI	RGCY	9 cut(s)	28, 87, 146, 170, 251, 326, 338, 352, 422
CviKI_1	RGCY	9 cut(s)	28, 87, 146, 170, 251, 326, 338, 352, 422
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco130I	CCWWGG	3 cut(s)	243, 333, 375
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	3 cut(s)	243, 333, 375
ErhI	CCWWGG	3 cut(s)	243, 333, 375
FaeI	CATG	7 cut(s)	50, 73, 115, 232, 247, 346, 379
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	7 cut(s)	46, 69, 111, 228, 243, 342, 375
FauNDI	CATATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	509
FspBI	CTAG	3 cut(s)	147, 356, 416
HaeIII	GGCC	1 cut(s)	338
Hin1II	CATG	7 cut(s)	50, 73, 115, 232, 247, 346, 379
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	4 cut(s)	103, 173, 451, 458
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	5 cut(s)	112, 177, 356, 416, 455
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	174, 340
HpyCH4IV	ACGT	2 cut(s)	305, 509
HpyCH4V	TGCA	2 cut(s)	228, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 428
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	2 cut(s)	305, 509
Hsp92II	CATG	7 cut(s)	50, 73, 115, 232, 247, 346, 379
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	7 cut(s)	148, 162, 432, 459, 462, 468, 479
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	3 cut(s)	147, 356, 416
MaeII	ACGT	2 cut(s)	305, 509
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	70, 432
MluCI	AATT	2 cut(s)	10, 191
MlyI	GAGTC	3 cut(s)	112, 460, 467
MnlI	CCTC	3 cut(s)	145, 399, 412
MseI	TTAA	3 cut(s)	30, 188, 204
MspCI	CTTAAG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	265, 428
NcoI	CCATGG	2 cut(s)	243, 375
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	7 cut(s)	50, 73, 115, 232, 247, 346, 379
NspI	RCATGY	1 cut(s)	50
PagI	TCATGA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	173
PleI	GAGTC	3 cut(s)	111, 459, 466
PpsI	GAGTC	3 cut(s)	111, 459, 466
PscI	ACATGT	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	30, 188, 204
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	3 cut(s)	112, 460, 467
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	9 cut(s)	89, 148, 156, 167, 253, 308, 354, 410, 512
SfaNI	GCATC	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	10, 191
SsiI	CCGC	2 cut(s)	41, 491
SspMI	CTAG	3 cut(s)	147, 356, 416
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	3 cut(s)	243, 333, 375
TaiI	ACGT	2 cut(s)	308, 512
TasI	AATT	2 cut(s)	10, 191
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	30, 188, 204
Tru9I	TTAA	3 cut(s)	30, 188, 204
TspDTI	ATGAA	4 cut(s)	79, 86, 245, 359
Vha464I	CTTAAG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	191
XbaI	TCTAGA	2 cut(s)	355, 415
XceI	RCATGY	1 cut(s)	50
XspI	CTAG	3 cut(s)	147, 356, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.