Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8330861.1

Orthogroup ID

OG0008406

Physical Location & Seq

Genomic Coordinates Forward (+)

189 .. 976

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8330861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 788 bp

atgcaaaaacagcgctggtatgttgctgataatggtgtttattccaaactgatctcggttatgggaaagaagggacaaacacggatggctatgtggttgttctctgagatgcggaatagtgggtgccgccctgatacttctgtttataatgcactcatctcagcccaccttaacagcaaggacaaagggaaggcgttggagaaagcgctcatgtactttaacaagatgaagggaatggaaaggtgtcaaccgaatattgttacgtacaatattctcttgagagcttttgcgcagagtcgaaatgtagaaaaagtcaattctttgtttaaagatcttgatgagagcatagcttcccctgatatatatacatacaatggtgtaatggatgcctatggtaaaaatgggatgatcagagatatggaatctgtgctttctcgcatgaaaagtaatcaatgcaagcccgataccatcaccttcaacctgttgattgattcatacgggaagaagcagcaatttgacaagatggaacaggtatttaagagcttactccattccaaggagagaccaactctccctacatttaattcaatgatcataaattatgggaaggcaaggcttaaagagcaagcagaatctgtgtttaagaagatgattgacatgaaatactcacctagcttcattacatatgagagtcttatcatgatgtatggctactgtgactctgtttcaaaagctagggagatatttgatggggtggctgaatctggacaggagatgaaggtgtcaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

263

Amino Acids

30.22

Weight (kDa)

9.33

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39620 AT4G39620
fragaria_vesca	FvH4_4g12030 FvH4_4g12030
malus_domestica	MD03G1187700.v1.1 MD11G1203200.v1.1
prunus_persica	Prupe.4G236100_v2.0.a1
pyrus_communis	pycom03g14050 pycom11g17630
rosa_chinensis	RchiOBHm_Chr4g0409671
rosa_laevigata	RLG00000008536
rosa_multiflora	Rmu_co8330861.1_g000001 Rmu_sc0008746.1_g000016 Rmu_sc0015305.1_g000009
rosa_roxburghii	Rroxscaffold_5G00354190
rosa_rugosa	Rorug04G0095900 Rorug04G0096000
rosa_samantha	Rh4AG157400 Rh4BG157000 Rh4CG167600 Rh4DG151400
rosa_wichuraiana	Rw4G012880 Rw4G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
Acc16I	TGCGCA	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	123
AciI	CCGC	2 cut(s)	112, 127
AfaI	GTAC	2 cut(s)	215, 266
AfeI	AGCGCT	2 cut(s)	14, 207
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	3 cut(s)	478, 588, 729
AluBI	AGCT	5 cut(s)	284, 350, 543, 675, 734
AluI	AGCT	5 cut(s)	284, 350, 543, 675, 734
Alw26I	GTCTC	1 cut(s)	556
AlwNI	CAGNNNCTG	1 cut(s)	635
Aor51HI	AGCGCT	2 cut(s)	14, 207
ApeKI	GCWGC	1 cut(s)	508
AspLEI	GCGC	3 cut(s)	15, 208, 292
AsuHPI	GGTGA	2 cut(s)	463, 660
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BanI	GGYRCC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	4 cut(s)	79, 476, 517, 743
BclI	TGATCA	2 cut(s)	408, 591
BcoDI	GTCTC	1 cut(s)	556
BfaI	CTAG	2 cut(s)	672, 735
BfoI	RGCGCY	2 cut(s)	16, 209
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	2 cut(s)	127, 509
BlsI	GCNGC	2 cut(s)	128, 510
BmiI	GGNNCC	1 cut(s)	125
BmsI	GCATC	2 cut(s)	99, 376
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpuEI	CTTGAG	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	1 cut(s)	555
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	3 cut(s)	90, 391, 411
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	96, 174
BseXI	GCAGC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	556
BsmFI	GGGAC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	556
Bsp143I	GATC	4 cut(s)	51, 331, 408, 591
BspACI	CCGC	2 cut(s)	112, 127
BspCNI	CTCAG	2 cut(s)	97, 173
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	4 cut(s)	51, 331, 408, 591
BssT1I	CCWWGG	1 cut(s)	555
Bst4CI	ACNGT	1 cut(s)	716
BstBAI	YACGTR	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	458, 627
BstDEI	CTNAG	2 cut(s)	105, 160
BstF5I	GGATG	3 cut(s)	90, 391, 411
BstH2I	RGCGCY	2 cut(s)	16, 209
BstHHI	GCGC	3 cut(s)	15, 208, 292
BstKTI	GATC	4 cut(s)	54, 334, 411, 594
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	4 cut(s)	51, 331, 408, 591
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 622
BstSNI	TACGTA	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	90, 391, 411
Cac8I	GCNNGC	2 cut(s)	458, 627
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	3 cut(s)	15, 208, 292
Csp6I	GTAC	2 cut(s)	214, 265
CviAII	CATG	4 cut(s)	211, 439, 658, 700
CviQI	GTAC	2 cut(s)	214, 265
DdeI	CTNAG	2 cut(s)	105, 160
DpnI	GATC	4 cut(s)	53, 333, 410, 593
DpnII	GATC	4 cut(s)	51, 331, 408, 591
DraI	TTTAAA	1 cut(s)	328
Eco105I	TACGTA	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	556
Eco47III	AGCGCT	2 cut(s)	14, 207
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	4 cut(s)	214, 442, 661, 703
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	4 cut(s)	210, 438, 657, 699
FauNDI	CATATG	1 cut(s)	685
FbaI	TGATCA	2 cut(s)	408, 591
Fnu4HI	GCNGC	2 cut(s)	127, 509
FokI	GGATG	3 cut(s)	97, 398, 418
Fsp4HI	GCNGC	2 cut(s)	127, 509
FspBI	CTAG	2 cut(s)	672, 735
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	3 cut(s)	14, 207, 291
GluI	GCNGC	2 cut(s)	127, 509
HaeII	RGCGCY	2 cut(s)	16, 209
HhaI	GCGC	3 cut(s)	15, 208, 292
Hin1II	CATG	4 cut(s)	214, 442, 661, 703
Hin6I	GCGC	3 cut(s)	13, 206, 290
HinP1I	GCGC	3 cut(s)	13, 206, 290
HincII	GTYRAC	2 cut(s)	248, 786
HindII	GTYRAC	2 cut(s)	248, 786
HinfI	GANTC	7 cut(s)	295, 422, 491, 632, 691, 719, 761
HphI	GGTGA	2 cut(s)	463, 660
Hpy166II	GTNNAC	2 cut(s)	248, 786
Hpy188I	TCNGA	2 cut(s)	106, 413
Hpy188III	TCNNGA	4 cut(s)	277, 335, 700, 765
Hpy8I	GTNNAC	2 cut(s)	248, 786
HpyAV	CCTTC	6 cut(s)	64, 184, 223, 484, 601, 772
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	4, 152, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 622
HpyF3I	CTNAG	2 cut(s)	105, 160
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	214, 442, 661, 703
HspAI	GCGC	3 cut(s)	13, 206, 290
Ksp22I	TGATCA	2 cut(s)	408, 591
Kzo9I	GATC	4 cut(s)	51, 331, 408, 591
LpnPI	CCDG	6 cut(s)	144, 369, 494, 515, 750, 755
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	2 cut(s)	99, 376
MaeI	CTAG	2 cut(s)	672, 735
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	259, 716
MalI	GATC	4 cut(s)	53, 333, 410, 593
MboI	GATC	4 cut(s)	51, 331, 408, 591
MboII	GAAGA	2 cut(s)	514, 658
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	4 cut(s)	316, 512, 583, 598
MlyI	GAGTC	3 cut(s)	304, 700, 713
MmeI	TCCRAC	1 cut(s)	177
MseI	TTAA	7 cut(s)	171, 219, 327, 537, 582, 618, 642
MwoI	GCNNNNNNNGC	2 cut(s)	10, 622
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	4 cut(s)	51, 331, 408, 591
NlaIII	CATG	4 cut(s)	214, 442, 661, 703
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	716
NsbI	TGCGCA	1 cut(s)	291
PagI	TCATGA	1 cut(s)	699
PfeI	GAWTC	4 cut(s)	422, 491, 632, 761
PkrI	GCNGC	2 cut(s)	128, 510
PleI	GAGTC	3 cut(s)	303, 699, 713
PpsI	GAGTC	3 cut(s)	303, 699, 713
Ppu21I	YACGTR	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	2 cut(s)	215, 266
RsaNI	GTAC	2 cut(s)	214, 265
SaqAI	TTAA	7 cut(s)	171, 219, 327, 537, 582, 618, 642
SatI	GCNGC	2 cut(s)	127, 509
Sau3AI	GATC	4 cut(s)	51, 331, 408, 591
SchI	GAGTC	3 cut(s)	304, 700, 713
SfaNI	GCATC	2 cut(s)	99, 376
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SnaBI	TACGTA	1 cut(s)	264
Sse9I	AATT	4 cut(s)	316, 512, 583, 598
SsiI	CCGC	2 cut(s)	112, 127
SspI	AATATT	2 cut(s)	256, 271
SspMI	CTAG	2 cut(s)	672, 735
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	298
TasI	AATT	4 cut(s)	316, 512, 583, 598
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	4 cut(s)	422, 491, 632, 761
Tru1I	TTAA	7 cut(s)	171, 219, 327, 537, 582, 618, 642
Tru9I	TTAA	7 cut(s)	171, 219, 327, 537, 582, 618, 642
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	1 cut(s)	508
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	5 cut(s)	242, 455, 483, 667, 674
TspGWI	ACGGA	1 cut(s)	97
XspI	CTAG	2 cut(s)	672, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.