Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008406

Physical Location & Seq

Genomic Coordinates Reverse (-)

33259557 .. 33261703

Gene Structure 2147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38065

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCCCCTAAATCTCTTACCCAACTCTCTCCACGCCTCCACTTTCCCCCCATTTCCCAACAACTCGACTCACCACCCATGCCTTCCGCTTCAGAAGCAGCCTCTTCGGGTCTCCTGCATTTCGACCCGCTTCAGAAGAAAACCCGGCACCCGGAAGTCCGACAACTCGGAGGCCCATGAGACGGTTCGTATGCTCATCCGAAGCTTCAGCGACAAAGAGCCCCTGCTCAAGTCTCTCAACAAGTACGTTAAGATTGTCAGGACCGAGCACTGCTTTCTTCTCTTTGAAGAGCTCGGCAAGTCTGACAAATGGCTTCAGTGCCTAGAGGTGTTCAGATGGATGCAAAAACAGCGGTGGTATGTTGCGGATAATGGTGTTTATTCCAAACTGATCTCGGTTATGGGAAAGAAGGGCCAAACACGGATGGCTATGTGGTTGTTCTCTGAGATGCGGAATAGTGGGTGCCGCCCTGATACTTCTGTTTATAATGCACTCATCTCGGCCCACCTTAACTGCAAGGACAAAGGGAAGGCGTTGGAGAAAGCGCTCGTGTACTTTAACAAGATGAAGGGAATGGAAAGGTGTCAACCGAATATTGTTACGTACAATATTCTCTTGAGAGCTTTTGCGCAGAGTCGTAATGTAGAAAAAGTCAATTCTTTGTTTAAAGATCTTGATGAGAGCATAGCTTCCCCTGATATCTATACGTACAATGGTGTAATGGATGCCTATGGGAAAAATGGGATGATCAGAGATATGGAATCTGTGCTTTCTCGCATGAAAAGTAATCAATGCAAGCCAGATACCATCACCTTCAACCTGTTGATTGATTCATACGGGAAGAAGCAACAATTTGACAAGATGGAACAGGAATGGTTTGCCCATGGAAGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

298

Amino Acids

34.57

Weight (kDa)

9.55

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	126 - 169	3.6e-09	PPR repeat family
PPR_long	PF17177	134 - 271	5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	146 - 209	4.6e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	157 - 210	1.7e-10	PPR repeat family
PPR_3	PF13812	196 - 247	3.9e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	197 - 240	8.2e-10	PPR repeat family
PPR_3	PF13812	221 - 281	9.9e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	232 - 280	9.6e-13	PPR repeat family
PPR	PF01535	235 - 265	1.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39620 AT4G39620
fragaria_vesca	FvH4_4g12030 FvH4_4g12030
malus_domestica	MD03G1187700.v1.1 MD11G1203200.v1.1
prunus_persica	Prupe.4G236100_v2.0.a1
pyrus_communis	pycom03g14050 pycom11g17630
rosa_chinensis	RchiOBHm_Chr4g0409671
rosa_laevigata	RLG00000008536
rosa_multiflora	Rmu_co8330861.1_g000001 Rmu_sc0008746.1_g000016 Rmu_sc0015305.1_g000009
rosa_roxburghii	Rroxscaffold_5G00354190
rosa_rugosa	Rorug04G0095900 Rorug04G0096000
rosa_samantha	Rh4AG157400 Rh4BG157000 Rh4CG167600 Rh4DG151400
rosa_wichuraiana	Rw4G012880 Rw4G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc16I	TGCGCA	1 cut(s)	630
AccB1I	GGYRCC	2 cut(s)	146, 462
AciI	CCGC	6 cut(s)	86, 127, 352, 365, 451, 466
AcuI	CTGAAG	4 cut(s)	74, 115, 190, 299
AfaI	GTAC	4 cut(s)	245, 554, 605, 710
AfeI	AGCGCT	1 cut(s)	546
AfiI	CCNNNNNNNGG	2 cut(s)	150, 181
AgsI	TTSAA	2 cut(s)	287, 817
AluBI	AGCT	4 cut(s)	204, 292, 623, 689
AluI	AGCT	4 cut(s)	204, 292, 623, 689
Alw21I	GWGCWC	2 cut(s)	270, 294
Alw26I	GTCTC	3 cut(s)	115, 173, 237
Aor51HI	AGCGCT	1 cut(s)	546
AoxI	GGCC	3 cut(s)	171, 412, 501
ApeKI	GCWGC	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	547, 631
AspS9I	GGNCC	4 cut(s)	172, 261, 412, 502
AsuC2I	CCSGG	2 cut(s)	144, 151
AsuHPI	GGTGA	2 cut(s)	62, 802
AvaII	GGWCC	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BanI	GGYRCC	2 cut(s)	146, 462
BanII	GRGCYC	2 cut(s)	222, 294
BauI	CACGAG	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	270, 294
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	4 cut(s)	330, 418, 815, 856
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 480, 514
BclI	TGATCA	1 cut(s)	747
BcnI	CCSGG	2 cut(s)	144, 151
BcoDI	GTCTC	3 cut(s)	115, 173, 237
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	548
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	2 cut(s)	98, 466
BlsI	GCNGC	2 cut(s)	99, 467
Bme1390I	CCNGG	2 cut(s)	144, 151
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	4 cut(s)	172, 261, 412, 502
BmiI	GGNNCC	2 cut(s)	148, 464
BmrFI	CCNGG	2 cut(s)	144, 151
BmsI	GCATC	3 cut(s)	330, 438, 715
BpuEI	CTTGAG	2 cut(s)	212, 637
BpuMI	CCSGG	2 cut(s)	144, 151
BsaAI	YACGTR	2 cut(s)	603, 708
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	883
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 181
BseDI	CCNNGG	1 cut(s)	883
BseGI	GGATG	5 cut(s)	195, 345, 429, 730, 750
BseLI	CCNNNNNNNGG	2 cut(s)	150, 181
BseMII	CTCAG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	3 cut(s)	173, 414, 503
BshNI	GGYRCC	2 cut(s)	146, 462
BsiHKAI	GWGCWC	2 cut(s)	270, 294
BsiSI	CCGG	2 cut(s)	144, 151
BslI	CCNNNNNNNGG	2 cut(s)	150, 181
BsmAI	GTCTC	3 cut(s)	115, 173, 237
BsmBI	CGTCTC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	173, 414, 503
Bso31I	GGTCTC	1 cut(s)	115
Bsp1286I	GDGCHC	3 cut(s)	222, 270, 294
Bsp143I	GATC	3 cut(s)	390, 670, 747
Bsp19I	CCATGG	1 cut(s)	883
BspACI	CCGC	6 cut(s)	86, 127, 352, 365, 451, 466
BspANI	GGCC	3 cut(s)	173, 414, 503
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	148, 464
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	2 cut(s)	146, 462
BspTNI	GGTCTC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	883
BssMI	GATC	3 cut(s)	390, 670, 747
BssSI	CACGAG	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	883
Bst2BI	CACGAG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	108, 282
BstBAI	YACGTR	2 cut(s)	603, 708
BstC8I	GCNNGC	1 cut(s)	797
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	883
BstF5I	GGATG	5 cut(s)	195, 345, 429, 730, 750
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	2 cut(s)	547, 631
BstKTI	GATC	3 cut(s)	393, 673, 750
BstMAI	GTCTC	3 cut(s)	115, 173, 237
BstMBI	GATC	3 cut(s)	390, 670, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 349
BstSCI	CCNGG	2 cut(s)	142, 149
BstSNI	TACGTA	2 cut(s)	603, 708
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	173, 414, 503
BtgI	CCRYGG	1 cut(s)	883
BtsCI	GGATG	5 cut(s)	195, 345, 429, 730, 750
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	268, 323
Cac8I	GCNNGC	1 cut(s)	797
CfoI	GCGC	2 cut(s)	547, 631
Cfr13I	GGNCC	4 cut(s)	172, 261, 412, 502
Csp6I	GTAC	4 cut(s)	244, 553, 604, 709
CviAII	CATG	4 cut(s)	78, 176, 778, 884
CviQI	GTAC	4 cut(s)	244, 553, 604, 709
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	3 cut(s)	392, 672, 749
DpnII	GATC	3 cut(s)	390, 670, 747
DraI	TTTAAA	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	108, 282
EarI	CTCTTC	2 cut(s)	108, 282
Ecl136II	GAGCTC	1 cut(s)	292
Eco105I	TACGTA	2 cut(s)	603, 708
Eco130I	CCWWGG	1 cut(s)	883
Eco24I	GRGCYC	2 cut(s)	222, 294
Eco31I	GGTCTC	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	261
Eco47III	AGCGCT	1 cut(s)	546
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	4 cut(s)	74, 115, 190, 299
EcoICRI	GAGCTC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	883
EcoT38I	GRGCYC	2 cut(s)	222, 294
ErhI	CCWWGG	1 cut(s)	883
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	81, 179, 781, 887
FatI	CATG	4 cut(s)	77, 175, 777, 883
FauI	CCCGC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	747
Fnu4HI	GCNGC	2 cut(s)	98, 466
FokI	GGATG	5 cut(s)	182, 352, 436, 737, 757
FriOI	GRGCYC	2 cut(s)	222, 294
Fsp4HI	GCNGC	2 cut(s)	98, 466
FspBI	CTAG	1 cut(s)	323
FspI	TGCGCA	1 cut(s)	630
GlaI	GCGC	2 cut(s)	546, 630
GluI	GCNGC	2 cut(s)	98, 466
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	3 cut(s)	173, 414, 503
HapII	CCGG	2 cut(s)	144, 151
HhaI	GCGC	2 cut(s)	547, 631
Hin1II	CATG	4 cut(s)	81, 179, 781, 887
Hin6I	GCGC	2 cut(s)	545, 629
HinP1I	GCGC	2 cut(s)	545, 629
HincII	GTYRAC	1 cut(s)	587
HindII	GTYRAC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	4 cut(s)	67, 634, 761, 830
HpaII	CCGG	2 cut(s)	144, 151
HphI	GGTGA	2 cut(s)	62, 802
Hpy166II	GTNNAC	2 cut(s)	553, 587
Hpy188I	TCNGA	9 cut(s)	93, 134, 160, 169, 200, 304, 335, 445, 752
Hpy188III	TCNNGA	3 cut(s)	259, 616, 674
Hpy8I	GTNNAC	2 cut(s)	553, 587
HpyAV	CCTTC	5 cut(s)	92, 403, 523, 562, 823
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	3 cut(s)	246, 602, 707
HpyCH4V	TGCA	5 cut(s)	117, 343, 491, 516, 795
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 349
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	3 cut(s)	246, 602, 707
Hsp92II	CATG	4 cut(s)	81, 179, 781, 887
HspAI	GCGC	2 cut(s)	545, 629
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	3 cut(s)	390, 670, 747
LguI	GCTCTTC	1 cut(s)	282
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	3 cut(s)	330, 438, 715
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	3 cut(s)	246, 602, 707
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	3 cut(s)	392, 672, 749
MboI	GATC	3 cut(s)	390, 670, 747
MboII	GAAGA	5 cut(s)	95, 147, 269, 299, 853
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	3 cut(s)	222, 270, 294
MluCI	AATT	2 cut(s)	655, 851
MlyI	GAGTC	2 cut(s)	61, 643
MmeI	TCCRAC	2 cut(s)	183, 516
MnlI	CCTC	4 cut(s)	46, 111, 163, 319
MseI	TTAA	4 cut(s)	249, 510, 558, 666
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	2 cut(s)	144, 151
MspR9I	CCNGG	2 cut(s)	144, 151
MwoI	GCNNNNNNNGC	2 cut(s)	94, 349
NciI	CCSGG	2 cut(s)	144, 151
NcoI	CCATGG	1 cut(s)	883
NdeII	GATC	3 cut(s)	390, 670, 747
NlaIII	CATG	4 cut(s)	81, 179, 781, 887
NlaIV	GGNNCC	2 cut(s)	148, 464
NmeAIII	GCCGAG	2 cut(s)	273, 479
NsbI	TGCGCA	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	761, 830
PkrI	GCNGC	2 cut(s)	99, 467
PleI	GAGTC	2 cut(s)	61, 642
PpsI	GAGTC	2 cut(s)	61, 642
Ppu21I	YACGTR	2 cut(s)	603, 708
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	148, 464
PspPI	GGNCC	4 cut(s)	172, 261, 412, 502
PsuI	RGATCY	1 cut(s)	670
RsaI	GTAC	4 cut(s)	245, 554, 605, 710
RsaNI	GTAC	4 cut(s)	244, 553, 604, 709
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	249, 510, 558, 666
SatI	GCNGC	2 cut(s)	98, 466
Sau3AI	GATC	3 cut(s)	390, 670, 747
Sau96I	GGNCC	4 cut(s)	172, 261, 412, 502
SchI	GAGTC	2 cut(s)	61, 643
ScrFI	CCNGG	2 cut(s)	144, 151
SduI	GDGCHC	3 cut(s)	222, 270, 294
SfaNI	GCATC	3 cut(s)	330, 438, 715
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	227, 616
SmoI	CTYRAG	2 cut(s)	227, 616
SnaBI	TACGTA	2 cut(s)	603, 708
Sse9I	AATT	2 cut(s)	655, 851
SsiI	CCGC	6 cut(s)	86, 127, 352, 365, 451, 466
SspI	AATATT	2 cut(s)	595, 610
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	142, 149
StyI	CCWWGG	1 cut(s)	883
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	3 cut(s)	249, 605, 710
TaqI	TCGA	2 cut(s)	65, 122
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	2 cut(s)	655, 851
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	761, 830
Tru1I	TTAA	4 cut(s)	249, 510, 558, 666
Tru9I	TTAA	4 cut(s)	249, 510, 558, 666
TscAI	CASTG	2 cut(s)	275, 323
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	581, 794, 822
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	275, 323
VpaK11BI	GGWCC	1 cut(s)	261
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.