Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015305.1

Orthogroup ID

OG0008406

Physical Location & Seq

Genomic Coordinates Forward (+)

30583 .. 33445

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015305.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

atgcccctaaatctcttacccaactctctccactcctccaccttccccccatttcccaacaactcgactcaccacccatgccttccacttcagaagcagcctcttcgggtctcctgcatttcgacccgcttcagaagaaaacccggcacccggaagtccgacaactcggaggcccatgagacggttcgtatgctcatccgaagcttcagcgaccaagagcccctcgtcaagtctctcaacaagtacgttaagattgtcaggaccgagcactgctttcttctctttgaggagctcggcaagtctgacaaatggcttcagtgcctagaggtgttcagatggatgcaaaaacagcgctggtatgttgctgataatggtgtttattccaaactgatctcggttatgggaaagaagggacaaacacggatggctatgtggttgttctctgagatgcggaatagtgggtgccgccctgatacttctgtttataatgcactcatctcagcccaccttaacagcaaggacaaagggaaggcgttggagaaagcgctcatgtactttaacaagatgaagggaatggaaaggtgtcaaccgaatattgttacgtacaatattctcttgagagcttttgcgcagagtcgaaatgtagaaaaagtcaattctttgtttaaagatcttgatgagagcatagcttcccctgatatatatacatacaatggtgtaatggatgcctatggtaaaaatgggatgatcagagatatggaatctgtgctttctcgcatgaaaagtaatcaatgcaagcccgataccatcaccttcaacctgttgattgattcatacgggaagaagcagcaatttgacaagatggaacaggtatttaagagcttactccattccaaggagagaccaactctccctacatttaattcaatgatcataaattatgggaaggcaaggcttaaagagcaagcagaatctgtgtttaagaagatgattgacatgaaatactcacctagcttcattacatatgagagtcttatcatgatgtatggctactgtgactctgtttcaaaagctagggagatatttgatggggtggctgaatctggacaggagatgaaggtgtcaacatttaatgtgatgcttgatgtatactgcaggaatggtttgcccatggaagcagataagcttttgctgaatgcaaatagtattgggatacgcccaaatgtatctacgtataaacttctgtacaaggcttacactaaagctaacatgaaggagcttctagacaaattgctaaagtccatggacaaagatggtattgtccctcataagaggttctttctagaggcgttgggagcatttttgtcttcaacagggagtccagagtctgggagtgcctcaacaggtttaagcaggccacaggatgagaattgcatgttgacggagctctttgcaaaaaaggctggaacgtatgatgtgggcggtgtggtaagagatgatggggggcattttatgggggcagtagcactttcgatggattatggtagccaagagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

519

Amino Acids

59.04

Weight (kDa)

9.23

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39620 AT4G39620
fragaria_vesca	FvH4_4g12030 FvH4_4g12030
malus_domestica	MD03G1187700.v1.1 MD11G1203200.v1.1
prunus_persica	Prupe.4G236100_v2.0.a1
pyrus_communis	pycom03g14050 pycom11g17630
rosa_chinensis	RchiOBHm_Chr4g0409671
rosa_laevigata	RLG00000008536
rosa_multiflora	Rmu_co8330861.1_g000001 Rmu_sc0008746.1_g000016 Rmu_sc0015305.1_g000009
rosa_roxburghii	Rroxscaffold_5G00354190
rosa_rugosa	Rorug04G0095900 Rorug04G0096000
rosa_samantha	Rh4AG157400 Rh4BG157000 Rh4CG167600 Rh4DG151400
rosa_wichuraiana	Rw4G012880 Rw4G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc16I	TGCGCA	1 cut(s)	630
AccB1I	GGYRCC	2 cut(s)	146, 462
AccB7I	CCANNNNNTGG	1 cut(s)	1388
AccI	GTMKAC	1 cut(s)	1149
AciI	CCGC	4 cut(s)	127, 451, 466, 1482
AcuI	CTGAAG	4 cut(s)	74, 115, 190, 299
AfaI	GTAC	4 cut(s)	245, 554, 605, 1247
AfeI	AGCGCT	2 cut(s)	353, 546
AfiI	CCNNNNNNNGG	4 cut(s)	150, 181, 895, 1388
AgsI	TTSAA	4 cut(s)	817, 927, 1068, 1371
Alw21I	GWGCWC	3 cut(s)	270, 294, 1449
Alw26I	GTCTC	4 cut(s)	115, 173, 237, 895
AlwNI	CAGNNNCTG	2 cut(s)	974, 1388
Aor51HI	AGCGCT	2 cut(s)	353, 546
AoxI	GGCC	2 cut(s)	171, 1415
ApeKI	GCWGC	2 cut(s)	97, 847
AspLEI	GCGC	3 cut(s)	354, 547, 631
AspS9I	GGNCC	2 cut(s)	172, 261
AsuC2I	CCSGG	2 cut(s)	144, 151
AsuHPI	GGTGA	3 cut(s)	62, 802, 999
AvaII	GGWCC	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BanI	GGYRCC	2 cut(s)	146, 462
BanII	GRGCYC	3 cut(s)	222, 294, 1449
BbsI	GAAGAC	1 cut(s)	1359
Bbv12I	GWGCWC	3 cut(s)	270, 294, 1449
BbvI	GCAGC	2 cut(s)	109, 859
BccI	CCATC	8 cut(s)	330, 418, 815, 856, 1082, 1307, 1493, 1528
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciVI	GTATCC	1 cut(s)	1206
BclI	TGATCA	2 cut(s)	747, 930
BcnI	CCSGG	2 cut(s)	144, 151
BcoDI	GTCTC	4 cut(s)	115, 173, 237, 895
BfaI	CTAG	5 cut(s)	323, 1011, 1074, 1283, 1343
BfmI	CTRYAG	1 cut(s)	1153
BfoI	RGCGCY	2 cut(s)	355, 548
BfuI	GTATCC	1 cut(s)	1206
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	3 cut(s)	98, 466, 848
BlsI	GCNGC	3 cut(s)	99, 467, 849
Bme1390I	CCNGG	2 cut(s)	144, 151
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	172, 261
BmiI	GGNNCC	2 cut(s)	148, 464
BmrFI	CCNGG	2 cut(s)	144, 151
BmsI	GCATC	4 cut(s)	330, 438, 715, 1128
BpiI	GAAGAC	1 cut(s)	1359
BplI	GAGNNNNNCTC	2 cut(s)	892, 924
BpuEI	CTTGAG	1 cut(s)	637
BpuMI	CCSGG	2 cut(s)	144, 151
BsaAI	YACGTR	2 cut(s)	603, 1233
BsaI	GGTCTC	2 cut(s)	115, 895
BsaJI	CCNNGG	3 cut(s)	894, 1170, 1302
BsaXI	ACNNNNNCTCC	2 cut(s)	894, 924
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 181, 895, 1388
BseDI	CCNNGG	3 cut(s)	894, 1170, 1302
BseGI	GGATG	6 cut(s)	195, 345, 429, 730, 750, 1429
BseLI	CCNNNNNNNGG	4 cut(s)	150, 181, 895, 1388
BseMII	CTCAG	2 cut(s)	435, 513
BseRI	GAGGAG	2 cut(s)	25, 302
BseXI	GCAGC	2 cut(s)	109, 859
BshFI	GGCC	2 cut(s)	173, 1417
BshNI	GGYRCC	2 cut(s)	146, 462
BsiHKAI	GWGCWC	3 cut(s)	270, 294, 1449
BsiSI	CCGG	2 cut(s)	144, 151
BslFI	GGGAC	2 cut(s)	426, 1307
BslI	CCNNNNNNNGG	4 cut(s)	150, 181, 895, 1388
BsmAI	GTCTC	4 cut(s)	115, 173, 237, 895
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	2 cut(s)	426, 1307
BsmI	GAATGC	1 cut(s)	1201
BsnI	GGCC	2 cut(s)	173, 1417
Bso31I	GGTCTC	2 cut(s)	115, 895
Bsp1286I	GDGCHC	4 cut(s)	222, 270, 294, 1449
Bsp1407I	TGTACA	1 cut(s)	1245
Bsp143I	GATC	4 cut(s)	390, 670, 747, 930
Bsp19I	CCATGG	2 cut(s)	1170, 1302
BspACI	CCGC	4 cut(s)	127, 451, 466, 1482
BspANI	GGCC	2 cut(s)	173, 1417
BspCNI	CTCAG	2 cut(s)	436, 512
BspHI	TCATGA	1 cut(s)	1038
BspLI	GGNNCC	2 cut(s)	148, 464
BspMAI	CTGCAG	1 cut(s)	1157
BspT107I	GGYRCC	2 cut(s)	146, 462
BspTNI	GGTCTC	2 cut(s)	115, 895
BsrGI	TGTACA	1 cut(s)	1245
BssECI	CCNNGG	3 cut(s)	894, 1170, 1302
BssMI	GATC	4 cut(s)	390, 670, 747, 930
BssNAI	GTATAC	1 cut(s)	1150
BssT1I	CCWWGG	3 cut(s)	894, 1170, 1302
Bst1107I	GTATAC	1 cut(s)	1150
Bst4CI	ACNGT	2 cut(s)	184, 1055
Bst6I	CTCTTC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	1245
BstBAI	YACGTR	2 cut(s)	603, 1233
BstC8I	GCNNGC	3 cut(s)	797, 966, 1415
BstDEI	CTNAG	2 cut(s)	444, 499
BstDSI	CCRYGG	2 cut(s)	1170, 1302
BstF5I	GGATG	6 cut(s)	195, 345, 429, 730, 750, 1429
BstH2I	RGCGCY	2 cut(s)	355, 548
BstHHI	GCGC	3 cut(s)	354, 547, 631
BstKTI	GATC	4 cut(s)	393, 673, 750, 933
BstMAI	GTCTC	4 cut(s)	115, 173, 237, 895
BstMBI	GATC	4 cut(s)	390, 670, 747, 930
BstMWI	GCNNNNNNNGC	4 cut(s)	349, 961, 1355, 1460
BstNSI	RCATGY	1 cut(s)	1438
BstSCI	CCNGG	2 cut(s)	142, 149
BstSFI	CTRYAG	1 cut(s)	1153
BstSNI	TACGTA	2 cut(s)	603, 1233
BstV1I	GCAGC	2 cut(s)	109, 859
BstV2I	GAAGAC	1 cut(s)	1359
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BstZ17I	GTATAC	1 cut(s)	1150
BsuI	GTATCC	1 cut(s)	1206
BsuRI	GGCC	2 cut(s)	173, 1417
BtgI	CCRYGG	2 cut(s)	1170, 1302
BtsCI	GGATG	6 cut(s)	195, 345, 429, 730, 750, 1429
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	268, 323
Cac8I	GCNNGC	3 cut(s)	797, 966, 1415
CaiI	CAGNNNCTG	2 cut(s)	974, 1388
CciI	TCATGA	1 cut(s)	1038
CfoI	GCGC	3 cut(s)	354, 547, 631
Cfr13I	GGNCC	2 cut(s)	172, 261
Csp6I	GTAC	4 cut(s)	244, 553, 604, 1246
CviQI	GTAC	4 cut(s)	244, 553, 604, 1246
DdeI	CTNAG	2 cut(s)	444, 499
DpnI	GATC	4 cut(s)	392, 672, 749, 932
DpnII	GATC	4 cut(s)	390, 670, 747, 930
DraI	TTTAAA	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	2 cut(s)	292, 1447
Eco105I	TACGTA	2 cut(s)	603, 1233
Eco130I	CCWWGG	3 cut(s)	894, 1170, 1302
Eco24I	GRGCYC	3 cut(s)	222, 294, 1449
Eco31I	GGTCTC	2 cut(s)	115, 895
Eco47I	GGWCC	1 cut(s)	261
Eco47III	AGCGCT	2 cut(s)	353, 546
Eco53kI	GAGCTC	2 cut(s)	292, 1447
Eco57I	CTGAAG	4 cut(s)	74, 115, 190, 299
EcoICRI	GAGCTC	2 cut(s)	292, 1447
EcoT14I	CCWWGG	3 cut(s)	894, 1170, 1302
EcoT38I	GRGCYC	3 cut(s)	222, 294, 1449
ErhI	CCWWGG	3 cut(s)	894, 1170, 1302
Esp3I	CGTCTC	1 cut(s)	173
FalI	AAGNNNNNCTT	2 cut(s)	1322, 1354
FaqI	GGGAC	2 cut(s)	426, 1307
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	1024
FbaI	TGATCA	2 cut(s)	747, 930
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	3 cut(s)	98, 466, 848
FokI	GGATG	6 cut(s)	182, 352, 436, 737, 757, 1436
FriOI	GRGCYC	3 cut(s)	222, 294, 1449
Fsp4HI	GCNGC	3 cut(s)	98, 466, 848
FspBI	CTAG	5 cut(s)	323, 1011, 1074, 1283, 1343
FspI	TGCGCA	1 cut(s)	630
GlaI	GCGC	3 cut(s)	353, 546, 630
GluI	GCNGC	3 cut(s)	98, 466, 848
HaeII	RGCGCY	2 cut(s)	355, 548
HaeIII	GGCC	2 cut(s)	173, 1417
HapII	CCGG	2 cut(s)	144, 151
HhaI	GCGC	3 cut(s)	354, 547, 631
Hin6I	GCGC	3 cut(s)	352, 545, 629
HinP1I	GCGC	3 cut(s)	352, 545, 629
HincII	GTYRAC	3 cut(s)	587, 1125, 1440
HindII	GTYRAC	3 cut(s)	587, 1125, 1440
HindIII	AAGCTT	2 cut(s)	202, 1184
HpaII	CCGG	2 cut(s)	144, 151
HphI	GGTGA	3 cut(s)	62, 802, 999
Hpy166II	GTNNAC	4 cut(s)	587, 1125, 1150, 1440
Hpy188I	TCNGA	9 cut(s)	93, 134, 160, 169, 200, 304, 335, 445, 752
Hpy188III	TCNNGA	8 cut(s)	259, 616, 674, 1039, 1104, 1283, 1343, 1382
Hpy8I	GTNNAC	4 cut(s)	587, 1125, 1150, 1440
HpyAV	CCTTC	9 cut(s)	52, 92, 403, 523, 562, 823, 940, 1111, 1267
HpyCH4III	ACNGT	2 cut(s)	184, 1055
HpyCH4IV	ACGT	4 cut(s)	246, 602, 1232, 1469
HpyCH4V	TGCA	8 cut(s)	117, 343, 491, 795, 1155, 1199, 1434, 1454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	349, 961, 1355, 1460
HpyF3I	CTNAG	2 cut(s)	444, 499
HpySE526I	ACGT	4 cut(s)	246, 602, 1232, 1469
HspAI	GCGC	3 cut(s)	352, 545, 629
Ksp22I	TGATCA	2 cut(s)	747, 930
Kzo9I	GATC	4 cut(s)	390, 670, 747, 930
LmnI	GCTCC	4 cut(s)	289, 1276, 1355, 1444
Lsp1109I	GCAGC	2 cut(s)	109, 859
LweI	GCATC	4 cut(s)	330, 438, 715, 1128
MaeI	CTAG	5 cut(s)	323, 1011, 1074, 1283, 1343
MaeII	ACGT	4 cut(s)	246, 602, 1232, 1469
MaeIII	GTNAC	2 cut(s)	598, 1055
MalI	GATC	4 cut(s)	392, 672, 749, 932
MboI	GATC	4 cut(s)	390, 670, 747, 930
MboII	GAAGA	6 cut(s)	95, 147, 269, 853, 997, 1359
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	4 cut(s)	222, 270, 294, 1449
MluCI	AATT	6 cut(s)	655, 851, 922, 937, 1289, 1429
MlyI	GAGTC	6 cut(s)	61, 643, 1039, 1052, 1387, 1394
MmeI	TCCRAC	2 cut(s)	183, 516
MspI	CCGG	2 cut(s)	144, 151
MspR9I	CCNGG	2 cut(s)	144, 151
Mva1269I	GAATGC	1 cut(s)	1201
MwoI	GCNNNNNNNGC	4 cut(s)	349, 961, 1355, 1460
NciI	CCSGG	2 cut(s)	144, 151
NcoI	CCATGG	2 cut(s)	1170, 1302
NdeI	CATATG	1 cut(s)	1024
NdeII	GATC	4 cut(s)	390, 670, 747, 930
NlaIV	GGNNCC	2 cut(s)	148, 464
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	1055
NsbI	TGCGCA	1 cut(s)	630
NspI	RCATGY	1 cut(s)	1438
PagI	TCATGA	1 cut(s)	1038
PctI	GAATGC	1 cut(s)	1201
PfeI	GAWTC	4 cut(s)	761, 830, 971, 1100
PflMI	CCANNNNNTGG	1 cut(s)	1388
PkrI	GCNGC	3 cut(s)	99, 467, 849
PleI	GAGTC	6 cut(s)	61, 642, 1038, 1052, 1386, 1393
PpsI	GAGTC	6 cut(s)	61, 642, 1038, 1052, 1386, 1393
Ppu21I	YACGTR	2 cut(s)	603, 1233
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	294, 1449
PspN4I	GGNNCC	2 cut(s)	148, 464
PspPI	GGNCC	2 cut(s)	172, 261
PstI	CTGCAG	1 cut(s)	1157
PstNI	CAGNNNCTG	2 cut(s)	974, 1388
PsuI	RGATCY	1 cut(s)	670
RsaI	GTAC	4 cut(s)	245, 554, 605, 1247
RsaNI	GTAC	4 cut(s)	244, 553, 604, 1246
SacI	GAGCTC	2 cut(s)	294, 1449
SatI	GCNGC	3 cut(s)	98, 466, 848
Sau3AI	GATC	4 cut(s)	390, 670, 747, 930
Sau96I	GGNCC	2 cut(s)	172, 261
SchI	GAGTC	6 cut(s)	61, 643, 1039, 1052, 1387, 1394
ScrFI	CCNGG	2 cut(s)	144, 151
SduI	GDGCHC	4 cut(s)	222, 270, 294, 1449
SfaNI	GCATC	4 cut(s)	330, 438, 715, 1128
SfcI	CTRYAG	1 cut(s)	1153
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
SnaBI	TACGTA	2 cut(s)	603, 1233
Sse9I	AATT	6 cut(s)	655, 851, 922, 937, 1289, 1429
SsiI	CCGC	4 cut(s)	127, 451, 466, 1482
SspI	AATATT	2 cut(s)	595, 610
SspMI	CTAG	5 cut(s)	323, 1011, 1074, 1283, 1343
SstI	GAGCTC	2 cut(s)	294, 1449
StyD4I	CCNGG	2 cut(s)	142, 149
StyI	CCWWGG	3 cut(s)	894, 1170, 1302
TaaI	ACNGT	2 cut(s)	184, 1055
TaiI	ACGT	4 cut(s)	249, 605, 1235, 1472
TaqI	TCGA	4 cut(s)	65, 122, 637, 1532
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	6 cut(s)	655, 851, 922, 937, 1289, 1429
TatI	WGTACW	2 cut(s)	552, 1245
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	4 cut(s)	761, 830, 971, 1100
TscAI	CASTG	2 cut(s)	275, 323
TseFI	GTSAC	1 cut(s)	1055
TseI	GCWGC	2 cut(s)	97, 847
Tsp45I	GTSAC	1 cut(s)	1055
TspDTI	ATGAA	7 cut(s)	581, 794, 822, 1006, 1013, 1130, 1286
TspGWI	ACGGA	2 cut(s)	436, 1457
TspRI	CASTG	2 cut(s)	275, 323
Van91I	CCANNNNNTGG	1 cut(s)	1388
VpaK11BI	GGWCC	1 cut(s)	261
XbaI	TCTAGA	2 cut(s)	1282, 1342
XceI	RCATGY	1 cut(s)	1438
XmiI	GTMKAC	1 cut(s)	1149
XspI	CTAG	5 cut(s)	323, 1011, 1074, 1283, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.