Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001482

Physical Location & Seq

Genomic Coordinates Reverse (-)

706721 .. 708721

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGTTTGTTTTTGTTTCCACCGCCCAAAGTTGCAACCTTTAATCTGCTGCTTGTGCTGACTGTGAGTCCCGTGAGCTTCACGTTTGTCAATGGAGGAATACCGACAACCCTCGAAGGACCCTTTAAGCCTGTCACTGTTCCTCTCGACGACAGCTTTCGAGGCAATGCCGTTGACTTGCCGGACACTGATCCTCGAGTTCGAAGAATCGTCAAGGGTTTCGAGCCTGAACAAATCTCTGTCTCTCTCTCTACAACCCATGACTCTGTCTGGATATCTTGGATTACAGTCTATCTCATGATCGAATTTGCAGGGGACTTTCAAATTGGAGACAATATAAAACCGTTGGATCCGAATAATGTTTCAAGTATTGTTACATATGGAAGGTACGGATTCCCTATGGATAGCCAATCAACGGGGCATTCCCTTATTTACAATCAGCTGTATCCTTTTGAAGGCCTCCAAAACTACACTTCCGGAATTATACACCATGTTCGCCTCACAGGATTGAGACCCAACAGTTTGTATCAGTATCAATGTGGAGATCCTAGCATTGCAGATATGAGCAAAGTATCTTATTTCAAGACTATGCCAGTATCCGGTCCCAAGAGTTACCCCAGAAGAATAGCTGTGGTTGGGGACCTTGGCCTTACATACAATACTACATCAACGGTCGATCACTTGTTGGCTAACGGACCTGATCTTATGTTATTGGTTGGGGACGTTAGTTATGCTAACTTGTACCTCACAAATGGCACTGGGTCTGATTGCTACTCTTGCTCATTCTCGCAAACTCCTATTCACGAAACTTATCAGCCTCGTTGGGATTACTGGGGAAGGTTTATGCAGCCGCTAGTGTCTAAAGTTCCAATGATGGTGGTAGAAGGGAACCATGAGATAGAAGAACAGGCTGGGAATCGAACATTTGCTTCTTATAGTTCGCGATTTGCATTCCCCTCCAACGAGAGTGGATCGATCCAAATAACAAATCATCTGCATTGTTTTATTCATTCAACGCAGGCGGGATACACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009846 GO:0009856 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0044237 GO:0044706 GO:0048856 GO:0051704 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

346

Amino Acids

38.37

Weight (kDa)

5.63

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	76 - 196	2.8e-12	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	208 - 318	1.4e-08	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07130 AT3G07130
fragaria_vesca	FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520
malus_domestica	MD04G1009700.v1.1 MD04G1009800.v1.1 MD05G1174000.v1.1 MD10G1161900.v1.1
prunus_persica	Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.8G201400_v2.0.a1
pyrus_communis	pycom04g00750 pycom04g00760 pycom05g16070 pycom10g13990
rosa_chinensis	RchiOBHm_Chr4g0415071 RchiOBHm_Chr6g0284551
rosa_laevigata	RLG00000008098 RLG00000012739
rosa_multiflora	Rmu_co8519847.1_g000001 Rmu_sc0001246.1_g000001 Rmu_sc0005257.1_g000004 Rmu_sc0042686.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358850
rosa_rugosa	Rorug04G0132200 Rorug04G0132300 Rorug06G0164100
rosa_samantha	Rh4AG191700 Rh4BG189600 Rh4CG202400 Rh4DG190000 Rh6AG277300 Rh6BG277200 Rh6CG279400 Rh6DG271800
rosa_wichuraiana	Rw4G016280 Rw6G023810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1036
AccII	CGCG	1 cut(s)	943
AccIII	TCCGGA	1 cut(s)	476
AciI	CCGC	3 cut(s)	23, 851, 1022
AclWI	GGATC	6 cut(s)	185, 344, 357, 539, 970, 979
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	2 cut(s)	389, 743
AfiI	CCNNNNNNNGG	3 cut(s)	415, 455, 599
AgsI	TTSAA	5 cut(s)	323, 366, 455, 583, 1014
AhdI	GACNNNNNGTC	1 cut(s)	66
AluBI	AGCT	4 cut(s)	78, 156, 442, 629
AluI	AGCT	4 cut(s)	78, 156, 442, 629
Alw26I	GTCTC	3 cut(s)	247, 324, 505
AlwI	GGATC	6 cut(s)	185, 344, 357, 539, 970, 979
Ama87I	CYCGRG	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	476
AoxI	GGCC	2 cut(s)	457, 646
ApeKI	GCWGC	2 cut(s)	49, 847
ApoI	RAATTY	1 cut(s)	305
AspS9I	GGNCC	4 cut(s)	119, 602, 640, 695
AsuII	TTCGAA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	4 cut(s)	119, 602, 640, 695
BamHI	GGATCC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	36, 859
BccI	CCATC	1 cut(s)	868
BceAI	ACGGC	1 cut(s)	155
BciVI	GTATCC	3 cut(s)	456, 607, 1019
BcoDI	GTCTC	3 cut(s)	247, 324, 505
BfaI	CTAG	2 cut(s)	549, 854
BfuI	GTATCC	3 cut(s)	456, 607, 1019
BisI	GCNGC	3 cut(s)	50, 848, 851
BlsI	GCNGC	3 cut(s)	51, 849, 852
Bme18I	GGWCC	4 cut(s)	119, 602, 640, 695
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	4 cut(s)	119, 602, 640, 695
BmiI	GGNNCC	5 cut(s)	121, 351, 604, 641, 890
BmrI	ACTGGG	2 cut(s)	768, 841
BmuI	ACTGGG	2 cut(s)	768, 841
Bpu14I	TTCGAA	1 cut(s)	202
Bsa29I	ATCGAT	1 cut(s)	974
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	643
BsaWI	WCCGGW	2 cut(s)	476, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 455, 599
Bse1I	ACTGG	3 cut(s)	593, 763, 836
Bse3DI	GCAATG	2 cut(s)	172, 552
BseAI	TCCGGA	1 cut(s)	476
BseCI	ATCGAT	1 cut(s)	974
BseDI	CCNNGG	1 cut(s)	643
BseLI	CCNNNNNNNGG	3 cut(s)	415, 455, 599
BseMI	GCAATG	2 cut(s)	172, 552
BseNI	ACTGG	3 cut(s)	593, 763, 836
BseXI	GCAGC	2 cut(s)	36, 859
BseYI	CCCAGC	1 cut(s)	911
Bsh1236I	CGCG	1 cut(s)	943
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	459, 648
BshVI	ATCGAT	1 cut(s)	974
BsiEI	CGRYCG	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	182, 477, 600
BslFI	GGGAC	5 cut(s)	54, 329, 588, 653, 734
BslI	CCNNNNNNNGG	3 cut(s)	415, 455, 599
BsmAI	GTCTC	3 cut(s)	247, 324, 505
BsmFI	GGGAC	5 cut(s)	54, 329, 588, 653, 734
BsmI	GAATGC	2 cut(s)	421, 950
BsnI	GGCC	2 cut(s)	459, 648
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	476
Bsp143I	GATC	8 cut(s)	190, 300, 349, 544, 676, 700, 971, 975
Bsp68I	TCGCGA	1 cut(s)	943
BspACI	CCGC	3 cut(s)	23, 851, 1022
BspANI	GGCC	2 cut(s)	459, 648
BspDI	ATCGAT	1 cut(s)	974
BspEI	TCCGGA	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	943
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	5 cut(s)	121, 351, 604, 641, 890
BspPI	GGATC	6 cut(s)	185, 344, 357, 539, 970, 979
BspT104I	TTCGAA	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	172, 552
BsrI	ACTGG	3 cut(s)	593, 763, 836
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	8 cut(s)	190, 300, 349, 544, 676, 700, 971, 975
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	6 cut(s)	64, 139, 289, 345, 521, 673
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	1020
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	943
BstKTI	GATC	8 cut(s)	193, 303, 352, 547, 679, 703, 974, 978
BstMAI	GTCTC	3 cut(s)	247, 324, 505
BstMBI	GATC	8 cut(s)	190, 300, 349, 544, 676, 700, 971, 975
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 162, 777
BstUI	CGCG	1 cut(s)	943
BstV1I	GCAGC	2 cut(s)	36, 859
BstX2I	RGATCY	2 cut(s)	349, 544
BstYI	RGATCY	2 cut(s)	349, 544
Bsu15I	ATCGAT	1 cut(s)	974
BsuI	GTATCC	3 cut(s)	456, 607, 1019
BsuRI	GGCC	2 cut(s)	459, 648
BsuTUI	ATCGAT	1 cut(s)	974
BtsIMutI	CAGTG	3 cut(s)	135, 186, 756
BtuMI	TCGCGA	1 cut(s)	943
Cac8I	GCNNGC	1 cut(s)	1020
CciI	TCATGA	1 cut(s)	297
Cfr13I	GGNCC	4 cut(s)	119, 602, 640, 695
ClaI	ATCGAT	1 cut(s)	974
Csp6I	GTAC	2 cut(s)	388, 742
CspCI	CAANNNNNGTGG	4 cut(s)	858, 893, 949, 984
CviAII	CATG	4 cut(s)	260, 298, 491, 893
CviQI	GTAC	2 cut(s)	388, 742
DpnI	GATC	8 cut(s)	192, 302, 351, 546, 678, 702, 973, 977
DpnII	GATC	8 cut(s)	190, 300, 349, 544, 676, 700, 971, 975
DriI	GACNNNNNGTC	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	643
Eco147I	AGGCCT	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	4 cut(s)	119, 602, 640, 695
Eco88I	CYCGRG	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoO109I	RGGNCCY	2 cut(s)	119, 640
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	4 cut(s)	263, 301, 494, 896
FaqI	GGGAC	5 cut(s)	54, 329, 588, 653, 734
FatI	CATG	4 cut(s)	259, 297, 490, 892
FauI	CCCGC	1 cut(s)	1015
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	50, 848, 851
Fsp4HI	GCNGC	3 cut(s)	50, 848, 851
FspBI	CTAG	2 cut(s)	549, 854
GluI	GCNGC	3 cut(s)	50, 848, 851
GsaI	CCCAGC	1 cut(s)	915
HaeIII	GGCC	2 cut(s)	459, 648
HapII	CCGG	3 cut(s)	182, 477, 600
Hin1II	CATG	4 cut(s)	263, 301, 494, 896
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	67, 207, 263, 393, 916
HpaII	CCGG	3 cut(s)	182, 477, 600
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	354, 766
Hpy188III	TCNNGA	7 cut(s)	146, 271, 298, 477, 583, 803, 942
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	5 cut(s)	110, 378, 449, 831, 878
HpyCH4III	ACNGT	6 cut(s)	64, 139, 289, 345, 521, 673
HpyCH4IV	ACGT	2 cut(s)	83, 723
HpyCH4V	TGCA	6 cut(s)	35, 311, 557, 847, 950, 997
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 162, 777
HpySE526I	ACGT	2 cut(s)	83, 723
Hsp92II	CATG	4 cut(s)	263, 301, 494, 896
Kpn2I	TCCGGA	1 cut(s)	476
Kzo9I	GATC	8 cut(s)	190, 300, 349, 544, 676, 700, 971, 975
Lsp1109I	GCAGC	2 cut(s)	36, 859
MaeI	CTAG	2 cut(s)	549, 854
MaeII	ACGT	2 cut(s)	83, 723
MaeIII	GTNAC	3 cut(s)	133, 373, 611
MalI	GATC	8 cut(s)	192, 302, 351, 546, 678, 702, 973, 977
MboI	GATC	8 cut(s)	190, 300, 349, 544, 676, 700, 971, 975
MboII	GAAGA	3 cut(s)	216, 633, 914
MflI	RGATCY	2 cut(s)	349, 544
MluCI	AATT	3 cut(s)	305, 324, 480
MlyI	GAGTC	2 cut(s)	76, 257
MmeI	TCCRAC	2 cut(s)	327, 984
MroI	TCCGGA	1 cut(s)	476
MseI	TTAA	2 cut(s)	42, 126
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	3 cut(s)	182, 477, 600
Mva1269I	GAATGC	2 cut(s)	421, 950
MvnI	CGCG	1 cut(s)	943
MwoI	GCNNNNNNNGC	3 cut(s)	55, 162, 777
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	8 cut(s)	190, 300, 349, 544, 676, 700, 971, 975
NlaIII	CATG	4 cut(s)	263, 301, 494, 896
NlaIV	GGNNCC	5 cut(s)	121, 351, 604, 641, 890
NmuCI	GTSAC	1 cut(s)	133
NruI	TCGCGA	1 cut(s)	943
NspV	TTCGAA	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	195
PagI	TCATGA	1 cut(s)	297
PceI	AGGCCT	1 cut(s)	459
PctI	GAATGC	2 cut(s)	421, 950
PfeI	GAWTC	3 cut(s)	207, 393, 916
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	51, 849, 852
PleI	GAGTC	2 cut(s)	75, 257
PpsI	GAGTC	2 cut(s)	75, 257
PpuMI	RGGWCCY	2 cut(s)	119, 640
PsiI	TTATAA	1 cut(s)	1036
Psp5II	RGGWCCY	2 cut(s)	119, 640
PspFI	CCCAGC	1 cut(s)	911
PspN4I	GGNNCC	5 cut(s)	121, 351, 604, 641, 890
PspPI	GGNCC	4 cut(s)	119, 602, 640, 695
PspPPI	RGGWCCY	2 cut(s)	119, 640
PspXI	VCTCGAGB	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	349, 544
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	442
RruI	TCGCGA	1 cut(s)	943
RsaI	GTAC	2 cut(s)	389, 743
RsaNI	GTAC	2 cut(s)	388, 742
SaqAI	TTAA	2 cut(s)	42, 126
SatI	GCNGC	3 cut(s)	50, 848, 851
Sau3AI	GATC	8 cut(s)	190, 300, 349, 544, 676, 700, 971, 975
Sau96I	GGNCC	4 cut(s)	119, 602, 640, 695
SchI	GAGTC	2 cut(s)	76, 257
Sfr274I	CTCGAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	4 cut(s)	119, 602, 640, 695
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	3 cut(s)	305, 324, 480
SseBI	AGGCCT	1 cut(s)	459
SsiI	CCGC	3 cut(s)	23, 851, 1022
SspMI	CTAG	2 cut(s)	549, 854
StuI	AGGCCT	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	6 cut(s)	64, 139, 289, 345, 521, 673
TaiI	ACGT	2 cut(s)	86, 726
TasI	AATT	3 cut(s)	305, 324, 480
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	3 cut(s)	207, 393, 916
Tru1I	TTAA	2 cut(s)	42, 126
Tru9I	TTAA	2 cut(s)	42, 126
TscAI	CASTG	3 cut(s)	142, 193, 763
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	49, 847
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	998
TspGWI	ACGGA	2 cut(s)	405, 708
TspRI	CASTG	3 cut(s)	142, 193, 763
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	4 cut(s)	119, 602, 640, 695
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	195
XspI	CTAG	2 cut(s)	549, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.